Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsARC_04g0001730		OGI:04007850 \| 16/16			ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)			Chr04:2654078-2658346		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		RLCK130, OsRLCK130
DNA seq		ATGGACATCTCTCATCTCCTCCTACGCTTCTTCCTCCTCCTCCTCCTGGCCTTCTCGCTCGACGATGCTCCTCATCTCCATTACTGCACTGAAGCTGCAGCAACAACTCTTCCTCCACCACCACCACCACCACCACCACCACCATTTTCCTTCAAATTCGACTTCTCCAACACCTACACCTACCGCCTAGAGGACCTCCGATTCGAGGGCACCGCCGCCGTGCACGGCGCCACCGTCGACCTCACCTGCAACGTCGCCCAGTGCACGACGGGGCGCATGTCCTACGGCCGCGCCGTGCCACTGTGGGACAGAGCCACCAACGAGGTGGCCAGCTTCGCCACCGACTTCGTCTTCAAGATCGTCACCCCGGACAACGTCGCCAGGGGAGACGGCATGGCCTTCTTCCTCTCCAGCTACCCCTCACGCGTCCCCCCCAACCCCAGCGGCCAGAACTTCGGTCTCATCGCCGGCGACGCCGACGACGCTGGCGACGGCCCGGACCGGTTCATCGCCGTCGAGTTCGACACATACGATGACACCTTCGAACGGCCGAGGCCGGCCGGCGACCACATCGGCATCGATGTCAGCAGCGTCGCCGATTCGATCAACACGACGAGCTTGAACTTCAGCAGGAACGGGGCCATGAGGGCGTCCATCACCTTCGACAATGTCACCAGGATGCTGGTCGCCACCGTGCAGTTTACTGAGCCTCCTGGCTCTCGTTCTGCTCCTCCTGTTCAGGTGAGTGCGAAGCTTGGAGATCCCAGGGCGTTGCTGCCGTCGGAGGTGGCCGTCGGTTTTTCTACGGCGAACGGCGCAACATTCCAGCTCGATCAGATACTATCATGGTCGTTCAACTCCACTCTTGCGTCTCCACATCCCGTAACCAAAGGTAAGCAACAGCGACTCTCTCCATACCAAAATATAAGAAGTTTTAGAATTAGACACGGTTATTAAGAATAGGCGTAAAATTAAACGGAAAGATGTTGTGATTGGTTGAGAAGTGGAGGTAAGTGAGAAAAATGAATGTTGGAGGATTCTGATTGGTTGGGAAGAGAATGCTGATGGAAAAATTGTTATATTTTAGGACGGATGAAGTATAACTTTGAATAGTTTCAGTTTTATTTTTGGGTAAAAAAGAAAGTCGACATGTTCTTTTCTGCCAAGAAAATATTTTTTATTTTCCAAAATCTGGAAAACTAACGAATTCGTGAATTTCAAATATCTTCATTCAAAAATTCACAAATACTTTTAGCTATAGTAAGATTTAGAACAGATAGCACATTTATTTGGTATATATACAGCCTGTTTTTTATCCCGTTAAATTTGTTGTTGATTAATCCGCGGTTACATGCATTATGCATAGGTGTGTTAGCGGCATTGATATTTGTGATCACTTGCATCCATGTTCATTTTCCACGTGATGTGCCGGTATATTGGGAATCTATTCAGCTCAGGATTATTTTTTTATTGATGCAATTTGCACTGATATTGATGCACATGCAAATGCAAGTCATTATTCCATTCCAAATTACACACGCTTTCGTGCCTTATCCATATTTTTCTGCATTTTGCTCCTACTATAGAAACCACATGTTTTACAGATGGCTAGATATAAAAAAAGGAAAATGCCACATTCTTTAGTTACGAATGCAACATCTTTTTTCCAATGGCCAAATGCCTTTTTTTTTCTTAGTTATCTTTATTTATTTCCTATGGAGAATGTAAGGGTAGAATTGACATTTTAAATGTTGAATTTGCATATGCAGGTGATGTGGCATGTACACGTGGCATTTAGCCTTTGCATCTGACCGAACACCATTAATTGTTGCATTTATGTATGCAGCCTTTGGAAATCAATTTCCACGCATCGAGTTTTTCTATACAAAAGAGGGGAAAATAATTTGTATATTCAAATGATTTTGTGTGAAATACATATGCGTACAGCGTATTCAAACCCAGAACCTCCGGTTGCCCGCGTAGCCTCCATAGCATCTGACCTACAAAAGCACTTCCTACTTCAATGGACATGCTACCTGGTCACATAGAAAAAATATCATCAACAAAAAAAAATATGGATCTCGCCAAAGTCTACAACTTTTATGTATAACACTGTGTCCATCTAAGGTAGTTTAAAACTCTCTTAAAAATCAGTGATCCAAATAGATATGAAACTGCTAACGTAATTTGGAGTATGTAATTGATCTATAATTTTTAATATAAAGTTTTTATTTATCCGATTTCATAGAAAAAATTATGTAAAAAATGCACGTATGAGTGGAATCATTTTCAGAGAGACACAGTCACTCAAAACAACCGTCCCAACAAATAAGGCTATATTTATTCATTTTCAAAGAGAAGAACTTAAAACAACCGTATCTGAGAGTCAATTTTCATCTTAATAGAGTCAATTTTAAAGGTCTTCCATGACCGCGGGCCCCTGACATAGTGCACAGTAGTGCAACAAAAGAGTCGACCCACTTCAAAAAGGTGTGCATGAACCGATTATTGGCACATGCTGGACTTAGGAATAACCAGTCCCCATTTTTAAATTCATAGGGCGACTCCCCATCATTGAATATGGTCTCACCGATCACTTACCCATTTTATATCTCTCCTCCTATGGACCTACATCTTTCAATATTCCTAGCATTGAGGTCAAATTATATAGCTACAAAGCAAATTCATTTTGCACCTCATGTTATTATCATTTATTTTCAATAACGCACATCTAGCTAATTACTAATAAATACCTGTAAATCTGTTATCATGGCACCATGGATATGCAGGTCATCACAAAAAGAAAGGGGCAGCAGGAAAGTTTGCGATTGTTGGAGCTCCCATATTTTTGCTTCTGGTGTGGTCTATCCTATCATGGTGGAAATGGAGAAGCTCAAGCCGCGACATTGACAACAGAACTGGAGGTGTTAGGCAGTTCAAGTACAACGAGTTGGCTGCTGCAACGAATCAGTTCTCCTCTGAGAGTAGGCTGATTGGAGCTGGTCCGTTCGGTGAAGGCTACAAGGGTTTCTTCAAGGAAATGGGCCGTCATGTTGCAATTAAGAAGATTTCGAAGGAGAGCAAATCAGAAGGAAGTAATAAGGACTTCTATGACGAAGTGAAAACCATCAGCAGTGCAAAGCACAAGAATCTCGTTGAACTTGTCGGTTGGTGCGTGAAGCGTAGATGGAACATGTTTGATTTCATGTGCTGGTGTAGGGAGAAGGCCCATACCATTTTCTTGGTGTATGAATTTGTGGATAACAGTAACCTCCGTGTTCACCTGCACGAGAAGGAGGCTGTGCTTCCATGGACAACGAGGTACCTCTACATCTACTTGATGAGCGATGCTGTTTAATTTCCTTTTTGAAACATGGAAGTAAATAATTAAAGTGGTATCAAAATTAAGTCTTTAACATGAGATATTTTACGTTGCTTGAGAAAGTACACCGAAAATTTTGGTACGTCGAGATACTAATAGGTACCAAGTTTTAAACTAGAAAATTTGGTACGATCCCGGTGTCTTCTTAAGGTTGTAAAATTGTCTCTTTAATTTAACATATTGTCTATGCATGTATCATCTGTCAGGTATAAAATAGTGAAGGACATTTGCGCAGCTCTGGTTCACCTCCACCATGAAAGACGTCCATTCGTCCTTCACAGAAATATCAAACCAAACAACATACTCCTGGACAAAGAGTTCAACGCCAAGCTAGCAGACTTCGGGCTGTCCAGAACTGCTGACAAGGTAGGCAAGGCCAGATACCTGGATCCAGAATGCAAAAAGACGGGAAAGTTCAAGCGCAGCTCGGATGTCTACAGCTTTGGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATAGCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCTGATGACAGGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGTGTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGAGTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACTAAGAGTAGTATTAGTCCTGCTCTACCAGCAGGATCAGGCGAAGAACTGCTGGACTTAGTTAATAAATGCTTGGATTAATACGAGCATAATTTTTTATTGTTGTGATTCCTGCAAGTTATTGTATCTTCTAAATCCATTTCTGTTTCTAATCAGTTGTGTC More
CDS seq		ATGGACATCTCTCATCTCCTCCTACGCTTCTTCCTCCTCCTCCTCCTGGCCTTCTCGCTCGACGATGCTCCTCATCTCCATTACTGCACTGAAGCTGCAGCAACAACTCTTCCTCCACCACCACCACCACCACCACCACCACCATTTTCCTTCAAATTCGACTTCTCCAACACCTACACCTACCGCCTAGAGGACCTCCGATTCGAGGGCACCGCCGCCGTGCACGGCGCCACCGTCGACCTCACCTGCAACGTCGCCCAGTGCACGACGGGGCGCATGTCCTACGGCCGCGCCGTGCCACTGTGGGACAGAGCCACCAACGAGGTGGCCAGCTTCGCCACCGACTTCGTCTTCAAGATCGTCACCCCGGACAACGTCGCCAGGGGAGACGGCATGGCCTTCTTCCTCTCCAGCTACCCCTCACGCGTCCCCCCCAACCCCAGCGGCCAGAACTTCGGTCTCATCGCCGGCGACGCCGACGACGCTGGCGACGGCCCGGACCGGTTCATCGCCGTCGAGTTCGACACATACGATGACACCTTCGAACGGCCGAGGCCGGCCGGCGACCACATCGGCATCGATGTCAGCAGCGTCGCCGATTCGATCAACACGACGAGCTTGAACTTCAGCAGGAACGGGGCCATGAGGGCGTCCATCACCTTCGACAATGTCACCAGGATGCTGGTCGCCACCGTGCAGTTTACTGAGCCTCCTGGCTCTCGTTCTGCTCCTCCTGTTCAGGTGAGTGCGAAGCTTGGAGATCCCAGGGCGTTGCTGCCGTCGGAGGTGGCCGTCGGTCATCACAAAAAGAAAGGGGCAGCAGGAAAGTTTGCGATTGTTGGAGCTCCCATATTTTTGCTTCTGGTGTGGTCTATCCTATCATGGTGGAAATGGAGAAGCTCAAGCCGCGACATTGACAACAGAACTGGAGGTGTTAGGCAGTTCAAGTACAACGAGTTGGCTGCTGCAACGAATCAGTTCTCCTCTGAGAGTAGGCTGATTGGAGCTGGTCCGTTCGGTGAAGGCTACAAGGGTTTCTTCAAGGAAATGGGCCGTCATGTTGCAATTAAGAAGATTTCGAAGGAGAGCAAATCAGAAGGAAGTAATAAGGACTTCTATGACGAAGTGAAAACCATCAGCAGTGCAAAGCACAAGAATCTCGTTGAACTTGTCGGTTGGTGCGTGAAGCGTAGATGGAACATGTTTGATTTCATGTGCTGGTGTAGGGAGAAGGCCCATACCATTTTCTTGGTGTATGAATTTGTGGATAACAGTAACCTCCGTGTTCACCTGCACGAGAAGGAGGCTGTGCTTCCATGGACAACGAGAAATATCAAACCAAACAACATACTCCTGGACAAAGAGTTCAACGCCAAGCTAGCAGACTTCGGGCTGTCCAGAACTGCTGACAAGGTAGGCAAGGCCAGATACCTGGATCCAGAATGCAAAAAGACGGGAAAGTTCAAGCGCAGCTCGGATGTCTACAGCTTTGGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATAGCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCTGATGACAGGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGTGTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGAGTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACTAA More
Protein seq		MDISHLLLRFFLLLLLAFSLDDAPHLHYCTEAAATTLPPPPPPPPPPPFSFKFDFSNTYTYRLEDLRFEGTAAVHGATVDLTCNVAQCTTGRMSYGRAVPLWDRATNEVASFATDFVFKIVTPDNVARGDGMAFFLSSYPSRVPPNPSGQNFGLIAGDADDAGDGPDRFIAVEFDTYDDTFERPRPAGDHIGIDVSSVADSINTTSLNFSRNGAMRASITFDNVTRMLVATVQFTEPPGSRSAPPVQVSAKLGDPRALLPSEVAVGHHKKKGAAGKFAIVGAPIFLLLVWSILSWWKWRSSSRDIDNRTGGVRQFKYNELAAATNQFSSESRLIGAGPFGEGYKGFFKEMGRHVAIKKISKESKSEGSNKDFYDEVKTISSAKHKNLVELVGWCVKRRWNMFDFMCWCREKAHTIFLVYEFVDNSNLRVHLHEKEAVLPWTTRNIKPNNILLDKEFNAKLADFGLSRTADKVGKARYLDPECKKTGKFKRSSDVYSFGIVLLEIACKKDENSFAKVWSRYLEKSLMQVADDRLRGEFDERQMERVIILGLWCCQPNIDMRPTVQQAMDFLESDGPLPELAEPETSSSKIGN
Function		L-type lectin-domain containing receptor kinase IX.1 [UniProtKB/Swiss-Prot:Q9LXA5]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsARC_04g0001730	OsARC_04g0001730.01	Chr04	2654078	2658346	+	NAM
CDS seq	ATGGACATCTCTCATCTCCTCCTACGCTTCTTCCTCCTCCTCCTCCTGGCCTTCTCGCTCGACGATGCTCCTCATCTCCATTACTGCACTGAAGCTGCAGCAACAACTCTTCCTCCACCACCACCACCACCACCACCACCACCATTTTCCTTCAAATTCGACTTCTCCAACACCTACACCTACCGCCTAGAGGACCTCCGATTCGAGGGCACCGCCGCCGTGCACGGCGCCACCGTCGACCTCACCTGCAACGTCGCCCAGTGCACGACGGGGCGCATGTCCTACGGCCGCGCCGTGCCACTGTGGGACAGAGCCACCAACGAGGTGGCCAGCTTCGCCACCGACTTCGTCTTCAAGATCGTCACCCCGGACAACGTCGCCAGGGGAGACGGCATGGCCTTCTTCCTCTCCAGCTACCCCTCACGCGTCCCCCCCAACCCCAGCGGCCAGAACTTCGGTCTCATCGCCGGCGACGCCGACGACGCTGGCGACGGCCCGGACCGGTTCATCGCCGTCGAGTTCGACACATACGATGACACCTTCGAACGGCCGAGGCCGGCCGGCGACCACATCGGCATCGATGTCAGCAGCGTCGCCGATTCGATCAACACGACGAGCTTGAACTTCAGCAGGAACGGGGCCATGAGGGCGTCCATCACCTTCGACAATGTCACCAGGATGCTGGTCGCCACCGTGCAGTTTACTGAGCCTCCTGGCTCTCGTTCTGCTCCTCCTGTTCAGGTGAGTGCGAAGCTTGGAGATCCCAGGGCGTTGCTGCCGTCGGAGGTGGCCGTCGGTCATCACAAAAAGAAAGGGGCAGCAGGAAAGTTTGCGATTGTTGGAGCTCCCATATTTTTGCTTCTGGTGTGGTCTATCCTATCATGGTGGAAATGGAGAAGCTCAAGCCGCGACATTGACAACAGAACTGGAGGTGTTAGGCAGTTCAAGTACAACGAGTTGGCTGCTGCAACGAATCAGTTCTCCTCTGAGAGTAGGCTGATTGGAGCTGGTCCGTTCGGTGAAGGCTACAAGGGTTTCTTCAAGGAAATGGGCCGTCATGTTGCAATTAAGAAGATTTCGAAGGAGAGCAAATCAGAAGGAAGTAATAAGGACTTCTATGACGAAGTGAAAACCATCAGCAGTGCAAAGCACAAGAATCTCGTTGAACTTGTCGGTTGGTGCGTGAAGCGTAGATGGAACATGTTTGATTTCATGTGCTGGTGTAGGGAGAAGGCCCATACCATTTTCTTGGTGTATGAATTTGTGGATAACAGTAACCTCCGTGTTCACCTGCACGAGAAGGAGGCTGTGCTTCCATGGACAACGAGAAATATCAAACCAAACAACATACTCCTGGACAAAGAGTTCAACGCCAAGCTAGCAGACTTCGGGCTGTCCAGAACTGCTGACAAGGTAGGCAAGGCCAGATACCTGGATCCAGAATGCAAAAAGACGGGAAAGTTCAAGCGCAGCTCGGATGTCTACAGCTTTGGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATAGCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCTGATGACAGGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGTGTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGAGTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACTAA More
Protein seq	MDISHLLLRFFLLLLLAFSLDDAPHLHYCTEAAATTLPPPPPPPPPPPFSFKFDFSNTYTYRLEDLRFEGTAAVHGATVDLTCNVAQCTTGRMSYGRAVPLWDRATNEVASFATDFVFKIVTPDNVARGDGMAFFLSSYPSRVPPNPSGQNFGLIAGDADDAGDGPDRFIAVEFDTYDDTFERPRPAGDHIGIDVSSVADSINTTSLNFSRNGAMRASITFDNVTRMLVATVQFTEPPGSRSAPPVQVSAKLGDPRALLPSEVAVGHHKKKGAAGKFAIVGAPIFLLLVWSILSWWKWRSSSRDIDNRTGGVRQFKYNELAAATNQFSSESRLIGAGPFGEGYKGFFKEMGRHVAIKKISKESKSEGSNKDFYDEVKTISSAKHKNLVELVGWCVKRRWNMFDFMCWCREKAHTIFLVYEFVDNSNLRVHLHEKEAVLPWTTRNIKPNNILLDKEFNAKLADFGLSRTADKVGKARYLDPECKKTGKFKRSSDVYSFGIVLLEIACKKDENSFAKVWSRYLEKSLMQVADDRLRGEFDERQMERVIILGLWCCQPNIDMRPTVQQAMDFLESDGPLPELAEPETSSSKIGN More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_04g0146300	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os04g06244	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os04g0146300	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_04g0001590	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_04g0001960	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_04g0001680	RBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_04g0001720	RBH	0.0	0.169398	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_04g0001710	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_04G0040200	RBH	0.2212215	0.0021855	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_04g0001910	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_04G0039500	RBH	0.2239775	0.0301775	0.003088
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_04g0001700	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_04g0001940	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_04g0001780	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_04g0001590	RBH	0.0	0.124597	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_04g0001670	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_04G001800	RBH	0.0	0.000000	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_04g0001760	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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