Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0000580 | OGI:04001650 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:833592-833981 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAAGTCTCTAACTATGCTTCAGGAATTGTTCATCATCGGTTGTGCCCAGGTTATCTGTTTGCAAGGCCTAAATCATCTAGTAGCCTGCGTTCCCTCGACATTTCCCAGTGCCCGAACCTTATGATGGCCCTTCAAGAGGACGAGAAATTGCGAGTCCTCCGCGCGCTCGCTACTGATGACATACACCTTGTGCCACAACTGTTATCAAGAGAAGGCTTCACATCTCTACAGTCGCTTACTTTCAGGTTCATGGGGTCTGAGGAACAGATGGAAGAAGAAATGCTACCGCAGTTTGCTTCTCTAACATCCCTCTCCCTTTATGCCGTGTTTAGTTTCAAAATATTTTTTTCAAACTTCCAACTTTTTCATCACATCTAAACTTTTCTAC |
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| CDS seq | ATGAAGTCTCTAACTATGCTTCAGGAATTGTTCATCATCGGTTATCTGTTTGCAAGGCCTAAATCATCTAGTAGCCTGCGTTCCCTCGACATTTCCCAGTGCCCGAACCTTATGATGGCCCTTCAAGAGGACGAGAAATTGCGAGTCCTCCGCGCGCTCGCTACTGATGACATACACCTTGTGCCACAACTGTTATCAAGAGAAGGCTTCACATCTCTACAGTCGCTTACTTTCAGGTTCATGGGGTCTGAGGAACAGATGGAAGAAGAAATGCTACCGCAGTTTGCTTCTCTAACATCCCTCTCCCTTTATGCCGTGTTTAGTTTCAAAATATTTTTTTCAAACTTCCAACTTTTTCATCACATCTAA |
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| Protein seq | MKSLTMLQELFIIGYLFARPKSSSSLRSLDISQCPNLMMALQEDEKLRVLRALATDDIHLVPQLLSREGFTSLQSLTFRFMGSEEQMEEEMLPQFASLTSLSLYAVFSFKIFFSNFQLFHHI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0000580 | OsARC_04g0000580.01 | Chr04 | 833592 | 833981 | + | NAM | ||
| CDS seq | ATGAAGTCTCTAACTATGCTTCAGGAATTGTTCATCATCGGTTATCTGTTTGCAAGGCCTAAATCATCTAGTAGCCTGCGTTCCCTCGACATTTCCCAGTGCCCGAACCTTATGATGGCCCTTCAAGAGGACGAGAAATTGCGAGTCCTCCGCGCGCTCGCTACTGATGACATACACCTTGTGCCACAACTGTTATCAAGAGAAGGCTTCACATCTCTACAGTCGCTTACTTTCAGGTTCATGGGGTCTGAGGAACAGATGGAAGAAGAAATGCTACCGCAGTTTGCTTCTCTAACATCCCTCTCCCTTTATGCCGTGTTTAGTTTCAAAATATTTTTTTCAAACTTCCAACTTTTTCATCACATCTAA
More
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| Protein seq | MKSLTMLQELFIIGYLFARPKSSSSLRSLDISQCPNLMMALQEDEKLRVLRALATDDIHLVPQLLSREGFTSLQSLTFRFMGSEEQMEEEMLPQFASLTSLSLYAVFSFKIFFSNFQLFHHI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0111100 | SBH | 0.220501 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g02030 | SBH | 0.145561 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0111100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000520 | SBH | 0.000000 | 6.949124 | 0.292704 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000550 | RBH | 0.0 | 0.0 | 0.382146 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000520 | RBH | 0.0 | 0.0 | 0.437636 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000570 | RBH | 0.0 | 0.127677 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000510 | SBH | 0.0 | 0.567566 | 1.438462 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0009100 | SBH | 0.8192915 | 6.777314 | 0.006804 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000540 | SBH | 0.0 | 0.228802 | 0.094875 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0011600 | RBH | 0.732554 | 0.268594 | 0.1856915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000510 | SBH | 0.065950 | 0.165859 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000540 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000540 | SBH | 0.0 | 8.659572 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000510 | SBH | 0.000000 | 0.536324 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000520 | SBH | 0.000000 | 1.841270 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000540 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000500 | RBH | 0.0 | 0.0 | 0.0 |
