Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsARC_04g0000560 | OGI:04001650 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:814476-815781 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ATGGCGGAGGTTGGGTGGGCCGTCTCAGCGCTGGGGTGGATCACGTCGCCGGTCGCCACCAGGCTCCTCCGCGAGGGCTTGGAGTTCATCGGCTTCAACGAATCCGAGAGGCTGCAGGACCTGGAGACCCGGATTATCCCGCGGATGGCGCAGTTGATGGAGCAGGCTGACAGGATCCCTCCTGGGCAGAGGGCTCCCCTGGAGCAGTGGGCCACCAAGCTCCGATCTGCCTTCTATGATGCAGAGGACATCTTGGATGTCGCCGACTACCACCGCCTTGAAAAGCAGGTAATTAACATGAAAAATTTTCTAGTGTAAAATAACAACAAAGAGTTGACAGCTATCATGTTTTCTAGTGTAAAATTTGATACCTTCAGCTACTAGTTATCTCGTGGTACCAAAATTTTTAGAATAAAATTTTTCTAGGACCATAAAATTTCTGAATTAATATATCCTGCCAACTCTTTTGTGTTCAAACTTCTGCCTATGTTTTATTTTAATTAGTGCATGAGCATCACTATTGACGAGTGCATATATGGATCCGATTTGCGGTGATTATCCACAGGGGACAAAATACTGGACTTCAAATTCTATATCATTTCCAAAAACTGGATTAGTAATCCCCTGTCTTAAGATATAGCTACCTGTTGAAATTAAATTTGTCCTAAAATATAGCCACTTCTCCACCTAACTTTTCATTTCAAGCAATCACTACCATCCCCATTTAATTTCTCCACCTATTTTCTCATCTCAACTAATCGCACTTATTGCTATATTTTAGGACACAACAAGTACTTTTTCTTATCTTATGAATGAAAATTTACCTATGTATTCTCATCACTCCCCATCATTCCCTATTTAAACATAACTATATTTTTCTTAGATAAAACATTGATGAACTATTCAAACCTATACATAAGATTAGCAACAAAATTTTAGTAAAAAAAGTTACACATTACACGACACTATAATATGAGGCTAAACGATGCGCAACTTTAGGGACTTGAAGATTAAAAAAGATATACTACTAGTATATTTATGGAAAAAATGTTACCAACCATTGAATCGTCACGAATTTAGTTTTATACCTTCAAAATCTTGGAGTGCACTTTAATACCCATAAAATATCAGTATGTTCTACTACATTTCACCACTTCTGTCAAACCTGCTTTGCCATCGTCTTGAACAACTTTGCCTCTGTTTTAACCAATTGTCCTTCTTCCCTCCTTTCGTCCTTTGTTATCCCATTCCGTAAGGAATGTCCTTCGTTATTCGAGGGCTAAGGCATAGCAGCAGGGACGTGTAG
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CDS seq | ATGGCGGAGGTTGGGTGGGCCGTCTCAGCGCTGGGGTGGATCACGTCGCCGGTCGCCACCAGGCTCCTCCGCGAGGGCTTGGAGTTCATCGGCTTCAACGAATCCGAGAGGCTGCAGGACCTGGAGACCCGGATTATCCCGCGGATGGCGCAGTTGATGGAGCAGGCTGACAGGATCCCTCCTGGGCAGAGGGCTCCCCTGGAGCAGCATAGCAGCAGGGACGTGTAG |
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Protein seq | MAEVGWAVSALGWITSPVATRLLREGLEFIGFNESERLQDLETRIIPRMAQLMEQADRIPPGQRAPLEQHSSRDV |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsARC_04g0000560 | OsARC_04g0000560.01 | Chr04 | 814476 | 815781 | + | NAM | ||
CDS seq | ATGGCGGAGGTTGGGTGGGCCGTCTCAGCGCTGGGGTGGATCACGTCGCCGGTCGCCACCAGGCTCCTCCGCGAGGGCTTGGAGTTCATCGGCTTCAACGAATCCGAGAGGCTGCAGGACCTGGAGACCCGGATTATCCCGCGGATGGCGCAGTTGATGGAGCAGGCTGACAGGATCCCTCCTGGGCAGAGGGCTCCCCTGGAGCAGCATAGCAGCAGGGACGTGTAG
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Protein seq | MAEVGWAVSALGWITSPVATRLLREGLEFIGFNESERLQDLETRIIPRMAQLMEQADRIPPGQRAPLEQHSSRDV |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.000000 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g02040 | SBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000510 | RBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000540 | RBH | 0.000000 | 1.852102 | 0.060153 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000500 | RBH | 0.000000 | 0.000000 | 0.000000 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000590 | RBH | 0.0 | 0.036378 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000500 | RBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0008800 | RBH | 0.012389 | 11.695101 | 0.0112365 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000530 | RBH | 0.0 | 0.000000 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0011500 | RBH | 0.07928 | 22.4222745 | 0.0426755 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000510 | RBH | 0.065950 | 0.165859 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000520 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000530 | RBH | 0.0 | 0.000000 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000500 | RBH | 0.0 | 0.000000 | 0.830552 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000510 | RBH | 0.0 | 5.126871 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000530 | RBH | 0.072646 | 0.577250 | 0.359407 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000480 | RBH | 0.000000 | 9.845701 | 0.000000 |