Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsARC_04g0000560 OGI:04001650 | 16/16 ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) Chr04:814476-815781
Gene Symbol -
DNA seq

ATGGCGGAGGTTGGGTGGGCCGTCTCAGCGCTGGGGTGGATCACGTCGCCGGTCGCCACCAGGCTCCTCCGCGAGGGCTTGGAGTTCATCGGCTTCAACGAATCCGAGAGGCTGCAGGACCTGGAGACCCGGATTATCCCGCGGATGGCGCAGTTGATGGAGCAGGCTGACAGGATCCCTCCTGGGCAGAGGGCTCCCCTGGAGCAGTGGGCCACCAAGCTCCGATCTGCCTTCTATGATGCAGAGGACATCTTGGATGTCGCCGACTACCACCGCCTTGAAAAGCAGGTAATTAACATGAAAAATTTTCTAGTGTAAAATAACAACAAAGAGTTGACAGCTATCATGTTTTCTAGTGTAAAATTTGATACCTTCAGCTACTAGTTATCTCGTGGTACCAAAATTTTTAGAATAAAATTTTTCTAGGACCATAAAATTTCTGAATTAATATATCCTGCCAACTCTTTTGTGTTCAAACTTCTGCCTATGTTTTATTTTAATTAGTGCATGAGCATCACTATTGACGAGTGCATATATGGATCCGATTTGCGGTGATTATCCACAGGGGACAAAATACTGGACTTCAAATTCTATATCATTTCCAAAAACTGGATTAGTAATCCCCTGTCTTAAGATATAGCTACCTGTTGAAATTAAATTTGTCCTAAAATATAGCCACTTCTCCACCTAACTTTTCATTTCAAGCAATCACTACCATCCCCATTTAATTTCTCCACCTATTTTCTCATCTCAACTAATCGCACTTATTGCTATATTTTAGGACACAACAAGTACTTTTTCTTATCTTATGAATGAAAATTTACCTATGTATTCTCATCACTCCCCATCATTCCCTATTTAAACATAACTATATTTTTCTTAGATAAAACATTGATGAACTATTCAAACCTATACATAAGATTAGCAACAAAATTTTAGTAAAAAAAGTTACACATTACACGACACTATAATATGAGGCTAAACGATGCGCAACTTTAGGGACTTGAAGATTAAAAAAGATATACTACTAGTATATTTATGGAAAAAATGTTACCAACCATTGAATCGTCACGAATTTAGTTTTATACCTTCAAAATCTTGGAGTGCACTTTAATACCCATAAAATATCAGTATGTTCTACTACATTTCACCACTTCTGTCAAACCTGCTTTGCCATCGTCTTGAACAACTTTGCCTCTGTTTTAACCAATTGTCCTTCTTCCCTCCTTTCGTCCTTTGTTATCCCATTCCGTAAGGAATGTCCTTCGTTATTCGAGGGCTAAGGCATAGCAGCAGGGACGTGTAG

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CDS seq

ATGGCGGAGGTTGGGTGGGCCGTCTCAGCGCTGGGGTGGATCACGTCGCCGGTCGCCACCAGGCTCCTCCGCGAGGGCTTGGAGTTCATCGGCTTCAACGAATCCGAGAGGCTGCAGGACCTGGAGACCCGGATTATCCCGCGGATGGCGCAGTTGATGGAGCAGGCTGACAGGATCCCTCCTGGGCAGAGGGCTCCCCTGGAGCAGCATAGCAGCAGGGACGTGTAG

Protein seq

MAEVGWAVSALGWITSPVATRLLREGLEFIGFNESERLQDLETRIIPRMAQLMEQADRIPPGQRAPLEQHSSRDV

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsARC_04g0000560 OsARC_04g0000560.01 Chr04 814476 815781 + NAM
CDS seq

ATGGCGGAGGTTGGGTGGGCCGTCTCAGCGCTGGGGTGGATCACGTCGCCGGTCGCCACCAGGCTCCTCCGCGAGGGCTTGGAGTTCATCGGCTTCAACGAATCCGAGAGGCTGCAGGACCTGGAGACCCGGATTATCCCGCGGATGGCGCAGTTGATGGAGCAGGCTGACAGGATCCCTCCTGGGCAGAGGGCTCCCCTGGAGCAGCATAGCAGCAGGGACGTGTAG

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Protein seq

MAEVGWAVSALGWITSPVATRLLREGLEFIGFNESERLQDLETRIIPRMAQLMEQADRIPPGQRAPLEQHSSRDV

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.000000 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g02040 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0000510 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0000540 RBH 0.000000 1.852102 0.060153
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0000500 RBH 0.000000 0.000000 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0000590 RBH 0.0 0.036378 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0000500 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0008800 RBH 0.012389 11.695101 0.0112365
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0000530 RBH 0.0 0.000000 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0011500 RBH 0.07928 22.4222745 0.0426755
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0000510 RBH 0.065950 0.165859 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0000520 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0000530 RBH 0.0 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0000500 RBH 0.0 0.000000 0.830552
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0000510 RBH 0.0 5.126871 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G000530 RBH 0.072646 0.577250 0.359407
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0000480 RBH 0.000000 9.845701 0.000000
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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