Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0030510 | OGI:04014620 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:29376719-29377891 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAACTCCTACTAGCTAAAGCTTCACCAGGAACGTTGCCCTGCTTGCTGATCTTTGATGGTGGAGTGGCAACTGTCTTGACAGCTGTAACAGGTAGGATCTTCTTGCCCGTGGGGTTACCAAGCGGTGATTTGCCGATGGACCTCCGAATTGGAGCAATACGAGGTGCATTGCTAGAACTGACAACAGTCGGGCGACCTGGTGCTGGCGACACTTGCTGCGGGTGCTGACGAAGGAGCATACTTCCTCTTTGTAACCGTAGCGAGCTGTTGTTCTCCTGGCATTGCCTACCCTGCTGGTGCTGGTGCTGTAGGCTTGAAACGATGGCCGGTGGAACAATACGGCCTCTGATGGTGCCCTTGACGATGATTCGTTGAGGCGGAGGTTGCACATTCAGGTGTCGATTGGTGTCATGGGCAGTGCTGGTAACTTGTGAATCACGACGAACTGCCTTTGCTGCTCTTGGAAGAGGACAATCACTGAAACGATGTCCTGGCTTACGACAGTTGCGACAGAATCGACTTGCTTGGTCCCGGGGTGCAGGCTTCTGATTATGCACTTTGGCAGCTGAAACGGGAACAAGCAGAGACTTATGAACATCCTTGGTGACGTTGCTTCTTCCATGGTTGGCTTCCACTGGAGCTGGAGTTGGAGGAAGAGCAGAAGGACTGTGACCGCTGTTGTCGATTGTCATTGGTTGACGAATGGGTTGCACGGTTGTCCCTTGTTCTTTCTTGGTCTTAGCTATGACCGCGTTCAACTGACAGTCCTTAGGCACATGATCTGTTCCTTCACACAAGAAACATGTGACCTTCCTCAAAGGGCATATATCTGAGTAATGGGTATATTCACCACAGCGACATGTGGGGAGGCATAAACTAGCAGTATGTCCGACTATCCCACATCTAGCACATGCTTTGAACTTCAACTCTCTTTCCCTGAAACTGTCAAGGGTCGCATCATCATTTTCATCATTATCATCATCGTTGTCAGCAGAAAACCGTTCTCCTGATTCATCATCTTCGGGTCTGGGCGGACCGTACTTTATGAGATGTCGGGTTAGCTGGCGTGCTCCACGGAAGGTATTTCTTCCTCTCTGACGCTTGGGTATCCTTGCTGCGTCTTCAGGAGTAAATTCTGAACTGGTGATGATCATGGTCCTGCCATTATCCAT
More
|
||||||||||
| CDS seq | ATGGATAATGGCAGGACCATGATCATCACCAGTTCAGAATTTACTCCTGAAGACGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATACCTTCCGTGGAGCACGCCAGCTAACCCGACATCTCATAAAGTACGGTCCGCCCAGACCCGAAGATGATGAATCAGGAGAACGTCCTTCTGCTCTTCCTCCAACTCCAGCTCCAGTGGAAGCCAACCATGGAAGAAGCAACGTCACCAAGGATGTTCATAAGTCTCTGCTTGTTCCCGTTTCAGCTGCCAAAGTGCATAATCAGAAGCCTGCACCCCGGGACCAAGCAAGTCGATTCTGTCGCAACTGTCGTAAGCCAGGACATCGTTTCAGTGATTGTCCTCTTCCAAGAGCAGCAAAGGCAGTTCGTCGTGATTCACAAGTTACCAGCACTGCCCATGACACCAATCGACACCTGAATGTGCAACCTCCGCCTCAACGAATCATCGTCAAGGGCACCATCAGAGGCCGTATTGTTCCACCGGCCATCGTTTCAAGCCTACAGCACCAGCACCAGCAGGGTAGGCAATGCCAGGAGAACAACAGCTCGCTACGGTTACAAAGAGGAAGTATGCTCCTTCGTCAGCACCCGCAGCAAGTGTCGCCAGCACCAGGTCGCCCGACTGTTGTCAGTTCTAGCAATGCACCTCGTATTGCTCCAATTCGGAGGTCCATCGGCAAATCACCGCTTGGTAACCCCACGGGCAAGAAGATCCTACCTGTTACAGCTGTCAAGACAGTTGCCACTCCACCATCAAAGATCAGCAAGCAGGGCAACGTTCCTGGTGAAGCTTTAGCTAGTAGGAGTTAA
More
|
||||||||||
| Protein seq | MDNGRTMIITSSEFTPEDAARIPKRQRGRNTFRGARQLTRHLIKYGPPRPEDDESGERPSALPPTPAPVEANHGRSNVTKDVHKSLLVPVSAAKVHNQKPAPRDQASRFCRNCRKPGHRFSDCPLPRAAKAVRRDSQVTSTAHDTNRHLNVQPPPQRIIVKGTIRGRIVPPAIVSSLQHQHQQGRQCQENNSSLRLQRGSMLLRQHPQQVSPAPGRPTVVSSSNAPRIAPIRRSIGKSPLGNPTGKKILPVTAVKTVATPPSKISKQGNVPGEALASRS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0030510 | OsARC_03g0030510.01 | Chr03 | 29376719 | 29377891 | - | NAM | ||
| CDS seq | ATGGATAATGGCAGGACCATGATCATCACCAGTTCAGAATTTACTCCTGAAGACGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATACCTTCCGTGGAGCACGCCAGCTAACCCGACATCTCATAAAGTACGGTCCGCCCAGACCCGAAGATGATGAATCAGGAGAACGTCCTTCTGCTCTTCCTCCAACTCCAGCTCCAGTGGAAGCCAACCATGGAAGAAGCAACGTCACCAAGGATGTTCATAAGTCTCTGCTTGTTCCCGTTTCAGCTGCCAAAGTGCATAATCAGAAGCCTGCACCCCGGGACCAAGCAAGTCGATTCTGTCGCAACTGTCGTAAGCCAGGACATCGTTTCAGTGATTGTCCTCTTCCAAGAGCAGCAAAGGCAGTTCGTCGTGATTCACAAGTTACCAGCACTGCCCATGACACCAATCGACACCTGAATGTGCAACCTCCGCCTCAACGAATCATCGTCAAGGGCACCATCAGAGGCCGTATTGTTCCACCGGCCATCGTTTCAAGCCTACAGCACCAGCACCAGCAGGGTAGGCAATGCCAGGAGAACAACAGCTCGCTACGGTTACAAAGAGGAAGTATGCTCCTTCGTCAGCACCCGCAGCAAGTGTCGCCAGCACCAGGTCGCCCGACTGTTGTCAGTTCTAGCAATGCACCTCGTATTGCTCCAATTCGGAGGTCCATCGGCAAATCACCGCTTGGTAACCCCACGGGCAAGAAGATCCTACCTGTTACAGCTGTCAAGACAGTTGCCACTCCACCATCAAAGATCAGCAAGCAGGGCAACGTTCCTGGTGAAGCTTTAGCTAGTAGGAGTTAA
More
|
|||||||
| Protein seq | MDNGRTMIITSSEFTPEDAARIPKRQRGRNTFRGARQLTRHLIKYGPPRPEDDESGERPSALPPTPAPVEANHGRSNVTKDVHKSLLVPVSAAKVHNQKPAPRDQASRFCRNCRKPGHRFSDCPLPRAAKAVRRDSQVTSTAHDTNRHLNVQPPPQRIIVKGTIRGRIVPPAIVSSLQHQHQQGRQCQENNSSLRLQRGSMLLRQHPQQVSPAPGRPTVVSSSNAPRIAPIRRSIGKSPLGNPTGKKILPVTAVKTVATPPSKISKQGNVPGEALASRS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g17170 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0023110 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0023040 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0023090 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0003170 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0000620 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0531400 | SBH | 0.048211 | 0 | 0.4520115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0003160 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0172600 | SBH | 0 | 0.075434 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0000670 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0000680 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0000640 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0000640 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0003250 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G022620 | SBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0003120 | SBH | 0.0 | 0.0 | 0.0 |
