Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0028640 | OGI:03073610 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:27614584-27617222 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCTCTGCTCTGCTTCTGCTCCTCTCTTCCTCTCTAAAAAGCGTCGCCCCAACCAACCTGCCCCGTCCTAGCTAAAGCCATAGCAGTAGGCGGGCTACGCATCATCTCCCGATTTGGCAACACCCATATTGCTGCAGTGCAGTTGCAGTTGTTGCGGTTGCAGTGCAAGAGGGAGAAGAGGAGTTTCTTGGTGAGGGAGAGGGAGAGATGAGGGACGTGGTGGTGGCGGTTGGCGGCGGGACGAAGGCGGCGAGCAGGCAGCAGGGGCAGGGCGGGGTGACGTTGGCGGCGGCGGCGGCGGGGTCGGGGTCGGGGTCGGCGGCGTCGCCATGCGCGGCGTGCAAGCTGCTGCGGCGGCGGTGCGCGGCGGGGTGCGTGTTCGCGCCCTACTTCCCGCCGGGCGAGCCGCACAAGTTCGCCAACGTCCACAAGGTCTTCGGCGCTAGCAATGTCAGCAAGCTCCTCCAGGTATACCGCACGATCGCTGCTTCTTCTCTCAATCTATCGTCTTCTCTCCCTAGCTGCCATGCCATGACATGCCTTGCCTTGTCTCACGAGCCCTCAATTCCCTCTGTTTCCGTCTACAATCTCTGTACCGCCTTCTTTCTCTGTATCATCGCGCTCATGCACACACAGACACAGTCGAGTTACTACCAGTTCTTGGATCTTTTTTTCCTTTTCAGTTCCGTGCCAATTCATTAGAAAGATGTGATGTTTCTTGCCATTGTTTAGCCCACAGTTTGTCAAATGTGTAGTAGTGCACAAAATTGATATCTTGTTTCGCCAGAAATGGCTTGCTTATTTTTAACATATATGGTTAAGAAAGTTTCCCCGGGCCATAACGACGATGCTAGTACTAGGGATAATATTGGTTTAGTGGTTTCGTTTGATTACGGTGTTTTCCCAACATGTAGCCTGCAATTCTCAGGAAAAAAAAAATTGAACGAAGGCCTGATAATCTCAGAATGATATACTGTATTAGATGGTGTAATAGTAGATTCTGAATACACCGAGATTTTGACAAATTCGGCAACTATATTTTCTGTTTACTAGCAGCCAGCCTAAATTCATTTCCTGGGTATGCCAAGTTCAGAATTGAACTTTCAGAATTTTCCACTTGCTCTTCAGTTTTCACCGTGAGTGGCACATGTACTGGGCATGTGCATCAAAATAAACATGGCAAAGATCCTACTTTCACTGCCCACTGGGTCCTCATCCATGCAGCAACCCAAAGCATTTCTTATGTGCTAAAGATCACCTAGCCAAAGAAAAGAAAAAGAAAAGATTGCTTTTTTTTTGTGAGCAAGTTCGAGTACTGCAGTGTGTTGTAGTACTAATTAAATCGACAGAGACCTCAGCATAGTGATCTCCAAACTGAACCCTCCCCCATGTGTCGAGCCGCCTGAAACAGTAGCCCATCAGTGGTGGTGTACGGCCTCGTCCTCCCAGTCTCAGCAGCCTTGGGCAGTCACCTTCACACAAGGCTCGCACATGCTGCGTAAAAAGAAAAAGAAAAAAAGCTTTCGGCTGCACCAAACATGCAAAAATGTCCCTAAAAATCCTTCCTTCCATTCCCTTTTCTTGGAACCAGAGAGACCCCCCCAAATCGCCACCATCTTTTCTCAATTTCTTCTCCTTGGCCCTAGCCTCCTAGTAGCCTTGTCACAATGTCACTGGCTCACTGTGTGTGTGCTTGCACGATTGTCAGGTGGGAAGGGACGTTTCTTCTACCTTGTCATGTACTGGTGCCTGCACAAAACCAGATCATTCAGATGTGACTTGACTGAAACTCTGCTGCTATGACAATCATATGTCTGAAACTTTGGGATTGTGGTGGAATGCAGGAGATACCGGTGCAGCACAGGGGGGACGCCGTGAGCAGCCTGGTGTACGAGGCGAACGCGCGGGTGAGGGACCCGATCTACGGCTGCGTCGGCGCCATCTCGTCGCTGCAGCAGCAGGTGGAGGCGCTGCAGGCGCAGCTGGCGCTGGCACAGGCGGAGATGGTCAGGCTGAGGATGAGCAACGACTACATCGGCCGCCGCCTCCGGGCGCGCGGCTGCGGCGGCGGCGGCGGAGGCGGAGGCGGGAGCACCACCACCACCACCGGCTCGCCGTCGTCCATGTCGTCGCCGGCCAAGACGGCGGAGCCGGAGCCGCTCTGCAAGCCCACGCCGGAGCTGGACATGGTGGTGGACCAGCCGGACTTCGGCTTCTGGTCCTACTAGGGCTTTGATCAAGGTAGTACTAGTAGCTGATTGTAGCTGTGATGATGATCAGGTGATGTTTTTGGAGTTAAGTGACAGATGGTATGGTATGGTATGGTATAGTAGTAGTTCATAGTAGAGTCAAGTGAGTAAAGTATATGGCAATGTGTGCGCAGTAGCAGCGTGACACTGGGAGGGAGGTGAACATAGGCAGAGAGGCCTCCTCCTAAACCTTCTTCTACTGGGATATATCAGGGGCTTTTTTTTTGGCTGTCCTTCTATGAGAAGGTAGAACACTGTTACAGACATTGGGTGTGCATTCACTGAGTTGTGTTATCCATTGCAAGAAACTTTGTTGCTCGTGACAATTTACTTGGTTGAAACAGCTGAACTATGCTGTGGGAAATGCAGATGGTGCTATCTATGTTTGTAC
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| CDS seq | ATGAGGGACGTGGTGGTGGCGGTTGGCGGCGGGACGAAGGCGGCGAGCAGGCAGCAGGGGCAGGGCGGGGTGACGTTGGCGGCGGCGGCGGCGGGGTCGGGGTCGGGGTCGGCGGCGTCGCCATGCGCGGCGTGCAAGCTGCTGCGGCGGCGGTGCGCGGCGGGGTGCGTGTTCGCGCCCTACTTCCCGCCGGGCGAGCCGCACAAGTTCGCCAACGTCCACAAGGTCTTCGGCGCTAGCAATGTCAGCAAGCTCCTCCAGGAGATACCGGTGCAGCACAGGGGGGACGCCGTGAGCAGCCTGGTGTACGAGGCGAACGCGCGGGTGAGGGACCCGATCTACGGCTGCGTCGGCGCCATCTCGTCGCTGCAGCAGCAGGTGGAGGCGCTGCAGGCGCAGCTGGCGCTGGCACAGGCGGAGATGGTCAGGCTGAGGATGAGCAACGACTACATCGGCCGCCGCCTCCGGGCGCGCGGCTGCGGCGGCGGCGGCGGAGGCGGAGGCGGGAGCACCACCACCACCACCGGCTCGCCGTCGTCCATGTCGTCGCCGGCCAAGACGGCGGAGCCGGAGCCGCTCTGCAAGCCCACGCCGGAGCTGGACATGGTGGTGGACCAGCCGGACTTCGGCTTCTGGTCCTACTAG
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| Protein seq | MRDVVVAVGGGTKAASRQQGQGGVTLAAAAAGSGSGSAASPCAACKLLRRRCAAGCVFAPYFPPGEPHKFANVHKVFGASNVSKLLQEIPVQHRGDAVSSLVYEANARVRDPIYGCVGAISSLQQQVEALQAQLALAQAEMVRLRMSNDYIGRRLRARGCGGGGGGGGGSTTTTTGSPSSMSSPAKTAEPEPLCKPTPELDMVVDQPDFGFWSY |
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| Function | LOB domain-containing protein 12 [UniProtKB/Swiss-Prot:Q8LBW3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0028640 | OsARC_03g0028640.01 | Chr03 | 27614584 | 27617222 | + | NAM | ||
| CDS seq | ATGAGGGACGTGGTGGTGGCGGTTGGCGGCGGGACGAAGGCGGCGAGCAGGCAGCAGGGGCAGGGCGGGGTGACGTTGGCGGCGGCGGCGGCGGGGTCGGGGTCGGGGTCGGCGGCGTCGCCATGCGCGGCGTGCAAGCTGCTGCGGCGGCGGTGCGCGGCGGGGTGCGTGTTCGCGCCCTACTTCCCGCCGGGCGAGCCGCACAAGTTCGCCAACGTCCACAAGGTCTTCGGCGCTAGCAATGTCAGCAAGCTCCTCCAGGAGATACCGGTGCAGCACAGGGGGGACGCCGTGAGCAGCCTGGTGTACGAGGCGAACGCGCGGGTGAGGGACCCGATCTACGGCTGCGTCGGCGCCATCTCGTCGCTGCAGCAGCAGGTGGAGGCGCTGCAGGCGCAGCTGGCGCTGGCACAGGCGGAGATGGTCAGGCTGAGGATGAGCAACGACTACATCGGCCGCCGCCTCCGGGCGCGCGGCTGCGGCGGCGGCGGCGGAGGCGGAGGCGGGAGCACCACCACCACCACCGGCTCGCCGTCGTCCATGTCGTCGCCGGCCAAGACGGCGGAGCCGGAGCCGCTCTGCAAGCCCACGCCGGAGCTGGACATGGTGGTGGACCAGCCGGACTTCGGCTTCTGGTCCTACTAG
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| Protein seq | MRDVVVAVGGGTKAASRQQGQGGVTLAAAAAGSGSGSAASPCAACKLLRRRCAAGCVFAPYFPPGEPHKFANVHKVFGASNVSKLLQEIPVQHRGDAVSSLVYEANARVRDPIYGCVGAISSLQQQVEALQAQLALAQAEMVRLRMSNDYIGRRLRARGCGGGGGGGGGSTTTTTGSPSSMSSPAKTAEPEPLCKPTPELDMVVDQPDFGFWSY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.025723 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0659700 | RBH | 0.0 | 0.0 | 0.913809 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g45750 | RBH | 0.0 | 0.0 | 0.121620 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0659700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0028750 | RBH | 0.000000 | 3.169241 | 1.511613 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0028450 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0028560 | RBH | 0.0 | 1.759363 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0028290 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0448400 | RBH | 0.254883 | 0.7383775 | 0.442922 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0028000 | RBH | 0.0 | 0.0 | 0.208890 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0448800 | RBH | 0.15446 | 0.1824265 | 0.89442 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0028370 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0028420 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0028430 | RBH | 0.0 | 9.601502 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0013150 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0028160 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G028140 | RBH | 0.000000 | 0.0 | 0.280952 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0028150 | RBH | 0.0 | 0.0 | 0.0 |
