Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0027890 | OGI:03071450 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:26534552-26536276 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACTCCAAATTGTTGTCCCTGCACCATTTCTTGAAGTAACCCAACCTAAGGTCAGGAGTTAATTGGCCACAGAAGAACTCCCTTTGATACTCTGTTTCGAACATCTTGGACATAGCAGAGACAGATTCAATGGTTTGCTCTACACCACACTCAAATGCCAGCTCCTGACACCTCTTGACTGAAAATGCAGCCTTGTCACTTGCCCGTTTCTGCATTTGCTTAGTGTTGACTATGACAGCCTCTTTGAAGGTACTGGCTATGTCCTTCACAATCTTAAGCATTGGGCTCTTGCTCTTCTTCACTGGACTGGACAAAGTGCTTGAAGTGCTACTTAATGGCATCTTGCCCTTTTGGCTCCTCTGGCTGCTTGTACTAATAGGTGTTGGTTGAAACTCCTCCTCATCCTCTTGCCCCTAGTCCTGACCATAATCATCTCCAGGCACAAAGGCTGTGCTTCCATCCACAGTGTACCCTCTGAATAGTTGATCAAGCAACTCCTCGTTTTCCGGAGGATCCCATTGCAGCCTCTTTAGGTATGGTTTCTTCTGCAGCGATAAATAAAATGGATGAGCATATATGTACTATACTAGTGCACAGAAAACTAAATTACATGCTCATATAACCTGAATTACAGAGTACTGTACTATCATAAAGGAAGAGTATAGTTTATACAGCGTACTGTCAAATTTTTGCCTACTTAATAGCTGAAAGTTAGTAACTACAACAGTAAGTCAGTCCTATGAGAGATCAGTTCATTGGACAATTTGAAACTAGGAAACTGAAAAATAGAATACACAGATTGGCTGTTTATACCTCTGTATGTATTTTCCAGAACGAAGACTCAACATCAATGGTTCCATCTGGTAACCTCCCCAACCCTATGTGCGCTTGCAAGTATCGCCAGAAAGAGTGGGTGGTTTTCAGTACGAGTATTTGGTTCTTCACCTGGCAATGGGTATACACCAACCCCCTTCTATCAAGTAAGCCGTCGACGATGGCTTGGTACCCTTCACCACTCATTTGTGCACCATTATACGTGCCTACTCTACGCCGCTCAATGCACAAATCTAACAAGCAAGCATTATTAACTTCATTCCATTGGGCTCGACTAGCTTGGCTCACCGGGGGTCCGCCGAAGCTCGCAAACTCCTCCACATCATCCTCCAATTCTTCATCTTCATTGTTGAAGGGAGCGCCGGAGCCGGATGCTTGCCCACGGACGGCACTCCTTGCTGCCCTCGGTGCCCGGGGACGCGGTAGGCGCTGGCCGCTGCCGCCGGCACGTACCGCCGTGTTGCTGCGCTGGCTCTGGCGGCCAGGTGCCGCGGCGACCGAACATGAGCGCTGTCGAACGCGCCCGCCTCTCCCCGAAGACAGCCCGCCTGGGAAGGCGCCACCATTTCCTCCTCCGTGACCAGTGCCTGCCGTGGAGGAGCCGCCCAAGTTCAGTCGCCTTGACAGATTTAGAGTTGCCCTTCCCTCTCTGGCTCCGACACGCGGTGGCGATAGGGAGGGAGGCTGGAGCCCCTGCCACGGCTAGTGAGGAGCTCGTCGTTGTCGCCCTGGAGGAAGGCTCCGTACATCCCAAGCCCCGGGAACCCCTCCGCTGCCGGCGCTTGTGAGTTGAGGTCGAAGCCAGCGCCGGCAGAGGGAGCGGTGGCGGGGCCGCTCGCCGACAGCTGCGTAGCCCACACGTTGAGGTCGTCGAAGCCGTCACCGTCCAT
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| CDS seq | ATGGACGGTGACGGCTTCGACGACCTCAACGTGTGGGCTACGCAGCTGTCGGCGAGCGGCCCCGCCACCGCTCCCTCTGCCGGCGCTGGCTTCGACCTCAACTCACAAGCGCCGGCAGCGGAGGGGTTCCCGGGGCTTGGGATGTACGGAGCCTTCCTCCAGGGCGACAACGACGAGCTCCTCACTAGCCGCACTGGTCACGGAGGAGGAAATGGTGGCGCCTTCCCAGGCGGGCTGTCTTCGGGGAGAGGCGGGCGCGTTCGACAGCGCTCATGTTCGGTCGCCGCGGCACCTGGCCGCCAGAGCCAGCGCAGCAACACGGCGGTACGTGCCGGCGGCAGCGGCCAGCGCCTACCGCGTCCCCGGGCACCGAGGGCAGCAAGGAGTGCCGTCCGTGGGCAAGCATCCGGCTCCGGCGCTCCCTTCAACAATGAAGATGAAGAATTGGAGGATGATGTGGAGGAGTTTGCGAGCTTCGGCGGACCCCCGGTGAGCCAAGCTAGTCGAGCCCAATGGAATGAAGTTAATAATGCTTGCTTGTTAGATTTGTGCATTGAGCGGCGTAGAGTAGGCACGTATAATGGTGCACAAATGAGTGGTGAAGGGTACCAAGCCATCGTCGACGGCTTACTTGATAGAAGGGGGTTGGTGTATACCCATTGCCAGGTGAAGAACCAAATACTCGTACTGAAAACCACCCACTCTTTCTGGCGATACTTGCAAGCGCACATAGGGTTGGGGAGGTTACCAGATGGAACCATTGATGTTGAGTCTTCGTTCTGGAAAATACATACAGAGAAGAAACCATACCTAAAGAGGCTGCAATGGGATCCTCCGGAAAACGAGGAGTTGCTTGATCAACTATTCAGAGGGTACACTGTGGATGGAAGCACAGCCTTTGTGCCTGGAGATGATTATGTGAAGAAGAGCAAGAGCCCAATGCTTAAGATTGTGAAGGACATAGCCAGTACCTTCAAAGAGGCTGTCATAGTCAACACTAAGCAAATGCAGAAACGGGCAAGTGACAAGGCTGCATTTTCAGTCAAGAGGTGTCAGGAGCTGGCATTTGAGTGTGGTGTAGAGCAAACCATTGAATCTGTCTCTGCTATGTCCAAGATGTTCGAAACAGAGTATCAAAGGGAGTTCTTCTGTGGCCAATTAACTCCTGACCTTAGGTTGGGTTACTTCAAGAAATGGTGCAGGGACAACAATTTGGAGTAG
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| Protein seq | MDGDGFDDLNVWATQLSASGPATAPSAGAGFDLNSQAPAAEGFPGLGMYGAFLQGDNDELLTSRTGHGGGNGGAFPGGLSSGRGGRVRQRSCSVAAAPGRQSQRSNTAVRAGGSGQRLPRPRAPRAARSAVRGQASGSGAPFNNEDEELEDDVEEFASFGGPPVSQASRAQWNEVNNACLLDLCIERRRVGTYNGAQMSGEGYQAIVDGLLDRRGLVYTHCQVKNQILVLKTTHSFWRYLQAHIGLGRLPDGTIDVESSFWKIHTEKKPYLKRLQWDPPENEELLDQLFRGYTVDGSTAFVPGDDYVKKSKSPMLKIVKDIASTFKEAVIVNTKQMQKRASDKAAFSVKRCQELAFECGVEQTIESVSAMSKMFETEYQREFFCGQLTPDLRLGYFKKWCRDNNLE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0027890 | OsARC_03g0027890.01 | Chr03 | 26534552 | 26536276 | - | NAM | ||
| CDS seq | ATGGACGGTGACGGCTTCGACGACCTCAACGTGTGGGCTACGCAGCTGTCGGCGAGCGGCCCCGCCACCGCTCCCTCTGCCGGCGCTGGCTTCGACCTCAACTCACAAGCGCCGGCAGCGGAGGGGTTCCCGGGGCTTGGGATGTACGGAGCCTTCCTCCAGGGCGACAACGACGAGCTCCTCACTAGCCGCACTGGTCACGGAGGAGGAAATGGTGGCGCCTTCCCAGGCGGGCTGTCTTCGGGGAGAGGCGGGCGCGTTCGACAGCGCTCATGTTCGGTCGCCGCGGCACCTGGCCGCCAGAGCCAGCGCAGCAACACGGCGGTACGTGCCGGCGGCAGCGGCCAGCGCCTACCGCGTCCCCGGGCACCGAGGGCAGCAAGGAGTGCCGTCCGTGGGCAAGCATCCGGCTCCGGCGCTCCCTTCAACAATGAAGATGAAGAATTGGAGGATGATGTGGAGGAGTTTGCGAGCTTCGGCGGACCCCCGGTGAGCCAAGCTAGTCGAGCCCAATGGAATGAAGTTAATAATGCTTGCTTGTTAGATTTGTGCATTGAGCGGCGTAGAGTAGGCACGTATAATGGTGCACAAATGAGTGGTGAAGGGTACCAAGCCATCGTCGACGGCTTACTTGATAGAAGGGGGTTGGTGTATACCCATTGCCAGGTGAAGAACCAAATACTCGTACTGAAAACCACCCACTCTTTCTGGCGATACTTGCAAGCGCACATAGGGTTGGGGAGGTTACCAGATGGAACCATTGATGTTGAGTCTTCGTTCTGGAAAATACATACAGAGAAGAAACCATACCTAAAGAGGCTGCAATGGGATCCTCCGGAAAACGAGGAGTTGCTTGATCAACTATTCAGAGGGTACACTGTGGATGGAAGCACAGCCTTTGTGCCTGGAGATGATTATGTGAAGAAGAGCAAGAGCCCAATGCTTAAGATTGTGAAGGACATAGCCAGTACCTTCAAAGAGGCTGTCATAGTCAACACTAAGCAAATGCAGAAACGGGCAAGTGACAAGGCTGCATTTTCAGTCAAGAGGTGTCAGGAGCTGGCATTTGAGTGTGGTGTAGAGCAAACCATTGAATCTGTCTCTGCTATGTCCAAGATGTTCGAAACAGAGTATCAAAGGGAGTTCTTCTGTGGCCAATTAACTCCTGACCTTAGGTTGGGTTACTTCAAGAAATGGTGCAGGGACAACAATTTGGAGTAG
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| Protein seq | MDGDGFDDLNVWATQLSASGPATAPSAGAGFDLNSQAPAAEGFPGLGMYGAFLQGDNDELLTSRTGHGGGNGGAFPGGLSSGRGGRVRQRSCSVAAAPGRQSQRSNTAVRAGGSGQRLPRPRAPRAARSAVRGQASGSGAPFNNEDEELEDDVEEFASFGGPPVSQASRAQWNEVNNACLLDLCIERRRVGTYNGAQMSGEGYQAIVDGLLDRRGLVYTHCQVKNQILVLKTTHSFWRYLQAHIGLGRLPDGTIDVESSFWKIHTEKKPYLKRLQWDPPENEELLDQLFRGYTVDGSTAFVPGDDYVKKSKSPMLKIVKDIASTFKEAVIVNTKQMQKRASDKAAFSVKRCQELAFECGVEQTIESVSAMSKMFETEYQREFFCGQLTPDLRLGYFKKWCRDNNLE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g44510 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0028060 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0027790 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0027840 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020510 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0027630 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0435900 | RBH | 0.0064955 | 0.0021505 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0027370 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0423100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0027650 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0027710 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0027760 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0027550 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0027480 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G027500 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0027520 | RBH | 0.0 | 0.0 | 0.0 |
