Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0025840 | OGI:03065790 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:24284931-24286803 | ||||||||
| Gene Symbol | CYCA3;1, CycA3;1, CycA3;os;1, Orysa;CycA3;1, CYCA2.2 | ||||||||||
| DNA seq | TGCCTCGCCGCGCCGCCGTGCTAGGAGGAGGAGGAGGGAGCAGCCGCGGAGATGGCCGGCAAGGAGAACGCCGCGGCGGCGCAGCCCCGCCTCACCCGCGCCGCCGCCAAGCGCGCGGCCGCCGTCACCGCCGTGGCCGTCGCCGCCAAGCGCAAGCGCGTCGCGCTCAGCGAGCTCCCCACGCTGTCCAACAACAACGCCGTGGTGCTCAAGCCGCAGCCGGCGCCCAGGGGCGGCAAGAGGGCCGCCTCCCACGCCGCCGAGCCCAAGAAGCCAGCTCCGCCGCCGGCGCCGGCGGTGGTGGTCGTGGTCGACGACGACGAGGAGGGGGAGGGGGATCCGCAGCTCTGCGCGCCCTACGCCTCCGACATCAACTCCTACCTCCGCTCCATGGAGGTACGCCACATCTCTCGTCCATGTCGCCCTCCGCTTCCTTCGCCCGCCGTCGCCATTTCCAAGATCTAACGAGGCGCCGTCGTGCGTGCGTGCGCAGGTGCAAGCGAAGCGGCGGCCGGCGGCGGACTACATCGAGACGGTGCAGGTGGACGTGACGGCCAACATGCGAGGCATCCTGGTCGACTGGCTCGTCGAGGTCGCCGAGGAGTACAAGCTCGTCTCCGACACGCTCTACCTCACCGTCTCCTACATCGACCGCTTCCTCTCCGCCAAATCCATCAACCGCCAGAAGCTGCAGCTCCTCGGCGTCTCCGCCATGCTCATCGCCTCGTAAGCGCCGCCCGTTTCATCCCCGCCCCTCGCTGAGATTTACCCATCAGTTCAAGAATCGATATTTACTTCGGATTGGTTTGGTGGATCCAGGAAGTATGAGGAGATCAGCCCCCCAAATGTGGAGGATTTCTGCTATATAACCGACAATACCTATATGAAACAGGAGGTGGGTACTGATCTGATCTCTCTTTGTTCATGTGCCTGAGTACGATTTGGTTTCAGATCTTGCAAGTGTTTGATGCTAAATTGCTGATTGAGTCGTGTTCTTGTTGCTTGTGTCGATGCGTAGGTTGTCAAGATGGAGCGCGATATACTGAATGTTCTCAAGTTTGAGATGGGCAATCCTACAACCAAGACGTTCCTGAGGTAAAACCACAAACCAAGTTAATCTGAAATGTTTCGTGTTAATCACCATGGATCTGTATCTGACCTTTTTCTCTCTGTTTTTCCCTACTCTGTTTTCAGGATGTTCATCAGATCTAGCCAAGAAGACGATAAGGTAGCAATCCACAAATCTCATCTTCTATACTCCTTGTTAAATTACTTGATTACTCTGTAGGAGTACATGTTTGTTGATCTCAAAGTATTTGTGATTCTTGCTGCAGTATCCTAGCCTTCCCTTGGAGTTCATGTGTAGCTATCTTGCCGAGCTGAGCCTGCTGGAGTACGGCTGTGTTCGGCTCTTGCCATCCGTTGTTGCAGCCTCAGTGGTGTTTGTTGCAAGGCTAACCCTTGATTCAGACACCAATCCTTGGGTATGCAAACAATTCCATTGCATCCAAAGCTTTCATTGAACCATATTTTGTGAAATGGCAATTCATCTGTTTCTGTGTGGTTGCAGAGCAAGAAGTTGCAAGAGGTGACCGGCTACAGGGCATCTGAGTTGAAGGATTGCATTACCTGCATACATGACTTGCAGCTAAACAGGAAAGGGTCATCTCTAATGGCTATCCGGGACAAGTACAAGCAACATAGGGTAAGCTTGAATCTTTTACAATTGGAGAATCTTCTTGACATCTTATTCATTTAGTACTAATCTAATTGCGCATTCATCTCTAACAGTTCAAGGGCGTATCAACATTGTTACCCCCTGTTGAGATCCCTGCATCATACTTCGAAGACCTAAACGAGTAGATGTTACTGG
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| CDS seq | ATGGCCGGCAAGGAGAACGCCGCGGCGGCGCAGCCCCGCCTCACCCGCGCCGCCGCCAAGCGCGCGGCCGCCGTCACCGCCGTGGCCGTCGCCGCCAAGCGCAAGCGCGTCGCGCTCAGCGAGCTCCCCACGCTGTCCAACAACAACGCCGTGGTGCTCAAGCCGCAGCCGGCGCCCAGGGGCGGCAAGAGGGCCGCCTCCCACGCCGCCGAGCCCAAGAAGCCAGCTCCGCCGCCGGCGCCGGCGGTGGTGGTCGTGGTCGACGACGACGAGGAGGGGGAGGGGGATCCGCAGCTCTGCGCGCCCTACGCCTCCGACATCAACTCCTACCTCCGCTCCATGGAGGTGCAAGCGAAGCGGCGGCCGGCGGCGGACTACATCGAGACGGTGCAGGTGGACGTGACGGCCAACATGCGAGGCATCCTGGTCGACTGGCTCGTCGAGGTCGCCGAGGAGTACAAGCTCGTCTCCGACACGCTCTACCTCACCGTCTCCTACATCGACCGCTTCCTCTCCGCCAAATCCATCAACCGCCAGAAGCTGCAGCTCCTCGGCGTCTCCGCCATGCTCATCGCCTCGAAGTATGAGGAGATCAGCCCCCCAAATGTGGAGGATTTCTGCTATATAACCGACAATACCTATATGAAACAGGAGGTTGTCAAGATGGAGCGCGATATACTGAATGTTCTCAAGTTTGAGATGGGCAATCCTACAACCAAGACGTTCCTGAGGATGTTCATCAGATCTAGCCAAGAAGACGATAAGTATCCTAGCCTTCCCTTGGAGTTCATGTGTAGCTATCTTGCCGAGCTGAGCCTGCTGGAGTACGGCTGTGTTCGGCTCTTGCCATCCGTTGTTGCAGCCTCAGTGGTGTTTGTTGCAAGGCTAACCCTTGATTCAGACACCAATCCTTGGAGCAAGAAGTTGCAAGAGGTGACCGGCTACAGGGCATCTGAGTTGAAGGATTGCATTACCTGCATACATGACTTGCAGCTAAACAGGAAAGGGTCATCTCTAATGGCTATCCGGGACAAGTACAAGCAACATAGGTTCAAGGGCGTATCAACATTGTTACCCCCTGTTGAGATCCCTGCATCATACTTCGAAGACCTAAACGAGTAG
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| Protein seq | MAGKENAAAAQPRLTRAAAKRAAAVTAVAVAAKRKRVALSELPTLSNNNAVVLKPQPAPRGGKRAASHAAEPKKPAPPPAPAVVVVVDDDEEGEGDPQLCAPYASDINSYLRSMEVQAKRRPAADYIETVQVDVTANMRGILVDWLVEVAEEYKLVSDTLYLTVSYIDRFLSAKSINRQKLQLLGVSAMLIASKYEEISPPNVEDFCYITDNTYMKQEVVKMERDILNVLKFEMGNPTTKTFLRMFIRSSQEDDKYPSLPLEFMCSYLAELSLLEYGCVRLLPSVVAASVVFVARLTLDSDTNPWSKKLQEVTGYRASELKDCITCIHDLQLNRKGSSLMAIRDKYKQHRFKGVSTLLPPVEIPASYFEDLNE |
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| Function | Cyclin-A3-1 [UniProtKB/Swiss-Prot:Q75I54] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0025840 | OsARC_03g0025840.01 | Chr03 | 24284931 | 24286803 | + | NAM | ||
| CDS seq | ATGGCCGGCAAGGAGAACGCCGCGGCGGCGCAGCCCCGCCTCACCCGCGCCGCCGCCAAGCGCGCGGCCGCCGTCACCGCCGTGGCCGTCGCCGCCAAGCGCAAGCGCGTCGCGCTCAGCGAGCTCCCCACGCTGTCCAACAACAACGCCGTGGTGCTCAAGCCGCAGCCGGCGCCCAGGGGCGGCAAGAGGGCCGCCTCCCACGCCGCCGAGCCCAAGAAGCCAGCTCCGCCGCCGGCGCCGGCGGTGGTGGTCGTGGTCGACGACGACGAGGAGGGGGAGGGGGATCCGCAGCTCTGCGCGCCCTACGCCTCCGACATCAACTCCTACCTCCGCTCCATGGAGGTGCAAGCGAAGCGGCGGCCGGCGGCGGACTACATCGAGACGGTGCAGGTGGACGTGACGGCCAACATGCGAGGCATCCTGGTCGACTGGCTCGTCGAGGTCGCCGAGGAGTACAAGCTCGTCTCCGACACGCTCTACCTCACCGTCTCCTACATCGACCGCTTCCTCTCCGCCAAATCCATCAACCGCCAGAAGCTGCAGCTCCTCGGCGTCTCCGCCATGCTCATCGCCTCGAAGTATGAGGAGATCAGCCCCCCAAATGTGGAGGATTTCTGCTATATAACCGACAATACCTATATGAAACAGGAGGTTGTCAAGATGGAGCGCGATATACTGAATGTTCTCAAGTTTGAGATGGGCAATCCTACAACCAAGACGTTCCTGAGGATGTTCATCAGATCTAGCCAAGAAGACGATAAGTATCCTAGCCTTCCCTTGGAGTTCATGTGTAGCTATCTTGCCGAGCTGAGCCTGCTGGAGTACGGCTGTGTTCGGCTCTTGCCATCCGTTGTTGCAGCCTCAGTGGTGTTTGTTGCAAGGCTAACCCTTGATTCAGACACCAATCCTTGGAGCAAGAAGTTGCAAGAGGTGACCGGCTACAGGGCATCTGAGTTGAAGGATTGCATTACCTGCATACATGACTTGCAGCTAAACAGGAAAGGGTCATCTCTAATGGCTATCCGGGACAAGTACAAGCAACATAGGTTCAAGGGCGTATCAACATTGTTACCCCCTGTTGAGATCCCTGCATCATACTTCGAAGACCTAAACGAGTAG
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| Protein seq | MAGKENAAAAQPRLTRAAAKRAAAVTAVAVAAKRKRVALSELPTLSNNNAVVLKPQPAPRGGKRAASHAAEPKKPAPPPAPAVVVVVDDDEEGEGDPQLCAPYASDINSYLRSMEVQAKRRPAADYIETVQVDVTANMRGILVDWLVEVAEEYKLVSDTLYLTVSYIDRFLSAKSINRQKLQLLGVSAMLIASKYEEISPPNVEDFCYITDNTYMKQEVVKMERDILNVLKFEMGNPTTKTFLRMFIRSSQEDDKYPSLPLEFMCSYLAELSLLEYGCVRLLPSVVAASVVFVARLTLDSDTNPWSKKLQEVTGYRASELKDCITCIHDLQLNRKGSSLMAIRDKYKQHRFKGVSTLLPPVEIPASYFEDLNE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.149586 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0607600 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g41100 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0607600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026010 | RBH | 0.0 | 2.174764 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0025780 | RBH | 0.0 | 1.715162 | 0.636047 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0025830 | RBH | 0.0 | 0.000000 | 0.564449 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0018460 | RBH | 0.0 | 0.171922 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0025630 | RBH | 0.0 | 7.718596 | 1.921748 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0401800 | RBH | 2.096052 | 1.2701 | 0.7763795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0025410 | RBH | 0.0 | 0.000000 | 0.120820 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0406700 | RBH | 2.234887 | 0.075606 | 13.8592845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0025670 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0025690 | RBH | 0.0 | 6.073517 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0025810 | RBH | 0.0 | 5.355589 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0025550 | RBH | 0.0 | 0.207229 | 0.137536 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0025440 | RBH | 0.0 | 3.251498 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G025520 | RBH | 0.0 | 5.685817 | 0.502607 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0025500 | RBH | 0.0 | 0.000000 | 0.0 |
