Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0023130 | OGI:06051710 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:20442049-20442663 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtcatggttcgtgtaagcattcggggtagaactccactagagaaagaccttcaatatactggttatgggtgggatattaagtccgctttgcaaaactgtgcttatgttgctatcatccgccttcgctatgagctacctgagttagaagaattttagtgctacatcccatccttaactgagggagctcaacacactacttacccagggttagctgaaataggtgtaggactacataccccatacctccaacttgcaaactttgtgcgctcactagatatgctttatcgctcaaccttagctgagctgcaacgcgtccgcaccagggtagccactttagaaagaagcattatgccaaggtatcgccagggacattatacaccggagttcatgtttggtgaggatgccatgcttgcaccagcacaagatataccaccacctgttggaatgtatattgaaagaagcccaccttcgcgcgtcgatgtcaggactgcttatcctccacttggaaccactggactgtatggactgccagagtatgttcaatggtatggtcgagtcttcaagctgaggatgagagactaagcaatagtcctatataacctctactgtcacggt
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| CDS seq | atgctttatcgctcaaccttagctgagctgcaacgcgtccgcaccagggtagccactttagaaagaagcattatgccaaggtatcgccagggacattatacaccggagttcatgtttggtgaggatgccatgcttgcaccagcacaagatataccaccacctgttggaatgtatattgaaagaagcccaccttcgcgcgtcgatgtcaggactgcttatcctccacttggaaccactggactgtatggactgccagagtatgttcaatggtatggtcgagtcttcaagctgaggatgagagactaa |
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| Protein seq | MLYRSTLAELQRVRTRVATLERSIMPRYRQGHYTPEFMFGEDAMLAPAQDIPPPVGMYIERSPPSRVDVRTAYPPLGTTGLYGLPEYVQWYGRVFKLRMRD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0023130 | OsARC_03g0023130.01 | Chr03 | 20442049 | 20442663 | + | NAM | ||
| CDS seq | atgctttatcgctcaaccttagctgagctgcaacgcgtccgcaccagggtagccactttagaaagaagcattatgccaaggtatcgccagggacattatacaccggagttcatgtttggtgaggatgccatgcttgcaccagcacaagatataccaccacctgttggaatgtatattgaaagaagcccaccttcgcgcgtcgatgtcaggactgcttatcctccacttggaaccactggactgtatggactgccagagtatgttcaatggtatggtcgagtcttcaagctgaggatgagagactaa
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| Protein seq | MLYRSTLAELQRVRTRVATLERSIMPRYRQGHYTPEFMFGEDAMLAPAQDIPPPVGMYIERSPPSRVDVRTAYPPLGTTGLYGLPEYVQWYGRVFKLRMRD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0267732 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g18710 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0267766 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005170 | RBH | 0.033851 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005900 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0224100 | SBH | 0.088124 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007340 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0265800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0009470 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0017750 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
