Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0022950 | OGI:03050170 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:19724601-19729051 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaagccttattagaatggtcattctttgtcaattcagcaacttccgcacgctgaataaaaattatcatgatgagttaccagaatacttcaattatcatgtttgtactttatagtaaagtaaagaagaacagatcctatttttatcttatcccgtactagtaaattgtccttgtccaaaaaaattatcttgtctagcacatccatggtactgctaccaggcgtacaacagtcattaatgtctccttgttgtcttggaagatatattggcctgtttaatgatacgtttaatatcagatattattcaaatatttgcaatcaactcaatgataaaaaatcatagtattaattgaaattggtactgcattaactccttccagaaaatatacaaattaaagaaacaaggttgttgtagaaaagaaaacaaaccttttctacaatactcttcatctctacaagatgagcaattacaggatgatccggcacaaacaatccctcagcttccataaggaggtagtagaaggttatatagcctaagaataagccagtaggcaagctcgtttcacttccaaaggctgcattttacccttatggttgccttgcccaactatcacctgcagaacagagtttattttaacaagggcaagcagtttatatcatataagataggcaaaagaaattatttttccttctcctttagcaagctttgccacaatcttgagaagatcagaaaaataaaacaactcctggtctcccacagcaagcagagtcagggtgcattacacttaatatccccattagctagtgctagaagagtcgctatcacctagtcagtgtgaagtgtgactgaactgataatgcggcacaatgatgtcaaggcaatggcacaagaaaatcaaacgatatttatttaaacaactcaaagtatataactaattataggtttgctgctttaactataactcaagaaaatcaaccgatgctttaattgtaggttcgctgccaattttattataactaaaacccccctacaattctaacaaaactatgtaagataaacgttagaaaatggaaagctctttcatgaaaaccacttgcatggcctaatgtttgtgtcatagcatgaactatgctaattactatcaatacgaaggccggtgcaagtgtcaattttccaatgcagtcactagaacatacttaaacaaaaggctatctaccaacttgatgaaatcatagagaacgaaaaatatcagccaattcagttcagccataaggttttctattgctaatgagatgacattcactagtattcaagtcaataacgaaaatgtgcttaggtaacactaaacattaaaaatgaatgggttttttttttcggaatggtagcccagtctgatatgatatctcttctccagtgccttgaaaatagcatgaaattgcacgagttcaagttcaaaaccatgttacccaaaacaatagagcatgcatgataacttggtttcctagaagattgccatttgccaaacacattatatcacatataacttgtatggattcctttaacacatcaaggaacaacagaagatcaccaatagtcaccgcatgagcactttccatcctcaaaatgatggaagcgatttatatccctcacgatgatttctcgtttaactattttagatatcaccgtaaatgcagtatgacaatccaaacaggaacgcaaattcttcaatatccttattggatgcccaggaggtgtcatcacaaggccatatgctaaagccagcctctcactatgcacccacagcattcgagtcttttgttccttgtctacgtcgtgcaacactacattaatgtcaggaatataaccttccctactagttttaagattgagccattccagcattgcatttatcacccgcatatctggatggtccactgatcccactgaaaaggcatgaatttcacccttgatctcaacccaactaagaccaggtaccttccttacaccaatattcctcattgatttcctcaaaagggcaacttgatccaaacttccagctgcagcatacatatttgatagtaagacataggttgtctcatcttgtggttcaatctcaagtattttttctgcagaaaatcttcccagagccacattcttatggattatacaagagctaagcaatgcacgccaaaccatagcagatggtgccgaaggaatatctccaatgaattgtagagcatcattcagacggccagctcgtcctagaagcctaacaatgcatgtataatgctccatacttggtttgatgccatgatcaatcctcatagaatcgaacagagataatccatgatttactaatcctgtgctactgcagacggatagcagagcaacaaaagtgatatcattggattccacgttgcttttattcatcctgtcaaaaagttctagagcatctgccgcttgtccatgaagcgcatatcctgagattattgcattccatgaaattatatcgcgttccattaaatgttgaaataccttgagagcatccctaatgtatccgcacttagcatatgtatcaataagtgaattgccaattacggtgtcattattaaatgtggacttctcaattgaacaatgaatctgaccagcatgtcttattgatgctgtgcttgcacaagcccggagcacactcgagtatgtaacttgagtgcaaggcatctgagcagcttgcatctcacagaatacactcaatgcttcttctcccaaaccagactgactgaagccaacaacaattgtgttccagctcacctcattggcatctcgcaatgatgagaagatcttaagtgagctatccatgtcgttgcacttggcatagaaatccattagtgcatttccaacaaaaagatcagactcatggcctatttttatagcatggttatgaatttgctttccgaaatccaactgaaccatgttagtacatgcttgcagaacactagaaaggctatattcattgggcagcacagaagaacgcatcaatcggaggaacagttcaaaggcttgttcattctgattgctctgtgcataccgggatatcataaaactcagaagtatcacatcatcatagggaatcatctcaaaagccaaacgtgcatccttaatatccccacatttggcatacatatcaagcaaagcaccaccgacatgaggctccgtgtcattaagggtttttatggcgcaaccatggatgcccttgcctagcacaactgatggcaagcaaactgcagctttgagcacactggttagtgcaaaagggttaggcttacaacccgacaccctcatcttggaaaagacccgaaaggcattctctgggcaatcattttcagaatagcaagaaaccatcgcagtccagacaacagcatccttacgcacaatcccattaaacacatgttccgcatcactgacaagactgcataaggagtaggcatcaatcagccctgaaccaacaaaggcgttgtgatcatggcccagcttccacgcacatgagtgcacacccccggcaagccctgccgcatccatggcaatagctagcttcaacatggtggtgagcacgaactggttcacctcgtgcccctcccaccgcagcctcctgaacagagccgcggcagcctcaaaatcaccgcgctgagcgtgggcctggacgagcgtgacgaaggacaccatgttccgctcaggcattcggtcgaacagcctgcgcgcgctggcaaggggcccgagcttcccgtacatattgagcaggacgttggcgcagaagaggtccaggcgccccacccctccgcggcgcactacatggccgtgcacggcgcggccgccgcgggcgtcgccacgagcgatgcagccctgcaactgcctggcgcacgcgaaggagtccaccccggggacggaggggaggatcgcgagcgaggtgagctcgtcctccagccactgtagcgctgctgcataggctgcgaacccacggcggtgtggggcaactgggcaggacaaggtggggaggaggaggccgcggttcagtggccggagcatccatccgcccagtcgcatcacagccttagcttctacgagaagctgaacctctcgggcttatatctttggcaaatggcggccccaatgttcaccgagagagagagagagagagagagagagagagagagagagagagagagagagagagagttgaatacttgaatccattgccattgggggatcccagtttcaggaggcgcgggcgcgagaaaggagggaggaggcagtagcgcggaggtggcgctggcggagggaggaagggagaagtggggcgatcggcgaacccggatgcttgagggcaagacggcggcggcggcggcggcggcggcggcgagagacgagagccagtgagcggtgagggagaaccggaga
More
|
||||||||||
| CDS seq | atgcgactgggcggatggatgctccggccactgaaccgcggcctcctcctccccaccttgtcctgcccagttgccccacaccgccgtgggttcgcagcctatgcagcagcgctacagtggctggaggacgagctcacctcgctcgcgatcctcccctccgtccccggggtggactccttcgcgtgcgccaggcagttgcagggctgcatcgctcgtggcgacgcccgcggcggccgcgccgtgcacggccatgtagtgcgccgcggaggggtggggcgcctggacctcttctgcgccaacgtcctgctcaatatgtacgggaagctcgggccccttgccagcgcgcgcaggctgttcgaccgaatgcctgagcggaacatggtgtccttcgtcacgctcgtccaggcccacgctcagcgcggtgattttgaggctgccgcggctctgttcaggaggctgcggtgggaggggcacgaggtgaaccagttcgtgctcaccaccatgttgaagctagctattgccatggatgcggcagggcttgccgggggtgtgcactcatgtgcgtggaagctgggccatgatcacaacgcctttgttggttcagggctgattgatgcctactccttatgcagtcttgtcagtgatgcggaacatgtgtttaatgggattgtgcgtaaggatgctgttgtctggactgcgatggtttcttgctattctgaaaatgattgcccagagaatgcctttcgggtcttttccaagatgagggtgtcgggttgtaagcctaacccttttgcactaaccagtgtgctcaaagctgcagtttgcttgccatcagttgtgctaggcaagggcatccatggttgcgccataaaaacccttaatgacacggagcctcatgtcggtggtgctttgcttgatatgtatgccaaatgtggggatattaaggatgcacgtttggcttttgagatgattccctatgatgatgtgatacttctgagttttatgatatcccgtcagtctggtttgggagaagaagcattgagtgtattctgtgagatgcaagctgctcagatgccttgcactcaagttacatactcgagtgtgctccgggcttgtgcaagcacagcatcaataagacatgctggtcagattcattgttcaattgagaagtccacatttaataatgacaccgtaattggcaattcacttattgatacatatgctaagtgcggatacattagggatgctctcaaggtatttcaacatttaatggaacgcgatataatttcatggaatgcaataatctcaggatatgcgcttcatggacaagcggcagatgctctagaactttttgacaggatgaataaaagcaacgtggaatccaatgatatcacttttgttgctctgctatccgtctgcagtagcacaggattagtaaatcatggattatctctgttcgattctatgaggattgatcatggcatcaaaccaagtatggagcattatacatgcattgttaggcttctaggacgagctggccgtctgaatgatgctctacaattcattggagatattccttcggcaccatctgctatggtttggcgtgcattgcttagctcttgtataatccataagaatgtggctctgggaagattttctgcagaaaaaatacttgagattgaaccacaagatgagacaacctatgtcttactatcaaatatgtatgctgcagctggaagtttggatcaagttgcccttttgaggaaatcaatgaggaatattggtgtaaggaaggtacctggtcttagttgggttgagatcaagggtgaaattcatgccttttcagtgggatcagtggaccatccagatatgcgggtgataaatgcaatgctggaatggctcaatcttaaaactagtagggaaggttatattcctgacattaatgtagtgttgcacgacgtagacaaggaacaaaagactcgaatgctgtgggtgcatagctatataaccttctactacctccttatggaagctgagggattgtttgtgccggatcatcctgtaattgctcatcttgtagagatgaagagtattgtagaaaagcgtgcggaagttgctgaattgacaaagaatgaccattctaataaggcttag
More
|
||||||||||
| Protein seq | MRLGGWMLRPLNRGLLLPTLSCPVAPHRRGFAAYAAALQWLEDELTSLAILPSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSYITFYYLLMEAEGLFVPDHPVIAHLVEMKSIVEKRAEVAELTKNDHSNKA |
||||||||||
| Function | Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [UniProtKB/Swiss-Prot:Q9LYV3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0022950 | OsARC_03g0022950.01 | Chr03 | 19724601 | 19729051 | - | NAM | ||
| CDS seq | atgcgactgggcggatggatgctccggccactgaaccgcggcctcctcctccccaccttgtcctgcccagttgccccacaccgccgtgggttcgcagcctatgcagcagcgctacagtggctggaggacgagctcacctcgctcgcgatcctcccctccgtccccggggtggactccttcgcgtgcgccaggcagttgcagggctgcatcgctcgtggcgacgcccgcggcggccgcgccgtgcacggccatgtagtgcgccgcggaggggtggggcgcctggacctcttctgcgccaacgtcctgctcaatatgtacgggaagctcgggccccttgccagcgcgcgcaggctgttcgaccgaatgcctgagcggaacatggtgtccttcgtcacgctcgtccaggcccacgctcagcgcggtgattttgaggctgccgcggctctgttcaggaggctgcggtgggaggggcacgaggtgaaccagttcgtgctcaccaccatgttgaagctagctattgccatggatgcggcagggcttgccgggggtgtgcactcatgtgcgtggaagctgggccatgatcacaacgcctttgttggttcagggctgattgatgcctactccttatgcagtcttgtcagtgatgcggaacatgtgtttaatgggattgtgcgtaaggatgctgttgtctggactgcgatggtttcttgctattctgaaaatgattgcccagagaatgcctttcgggtcttttccaagatgagggtgtcgggttgtaagcctaacccttttgcactaaccagtgtgctcaaagctgcagtttgcttgccatcagttgtgctaggcaagggcatccatggttgcgccataaaaacccttaatgacacggagcctcatgtcggtggtgctttgcttgatatgtatgccaaatgtggggatattaaggatgcacgtttggcttttgagatgattccctatgatgatgtgatacttctgagttttatgatatcccgtcagtctggtttgggagaagaagcattgagtgtattctgtgagatgcaagctgctcagatgccttgcactcaagttacatactcgagtgtgctccgggcttgtgcaagcacagcatcaataagacatgctggtcagattcattgttcaattgagaagtccacatttaataatgacaccgtaattggcaattcacttattgatacatatgctaagtgcggatacattagggatgctctcaaggtatttcaacatttaatggaacgcgatataatttcatggaatgcaataatctcaggatatgcgcttcatggacaagcggcagatgctctagaactttttgacaggatgaataaaagcaacgtggaatccaatgatatcacttttgttgctctgctatccgtctgcagtagcacaggattagtaaatcatggattatctctgttcgattctatgaggattgatcatggcatcaaaccaagtatggagcattatacatgcattgttaggcttctaggacgagctggccgtctgaatgatgctctacaattcattggagatattccttcggcaccatctgctatggtttggcgtgcattgcttagctcttgtataatccataagaatgtggctctgggaagattttctgcagaaaaaatacttgagattgaaccacaagatgagacaacctatgtcttactatcaaatatgtatgctgcagctggaagtttggatcaagttgcccttttgaggaaatcaatgaggaatattggtgtaaggaaggtacctggtcttagttgggttgagatcaagggtgaaattcatgccttttcagtgggatcagtggaccatccagatatgcgggtgataaatgcaatgctggaatggctcaatcttaaaactagtagggaaggttatattcctgacattaatgtagtgttgcacgacgtagacaaggaacaaaagactcgaatgctgtgggtgcatagctatataaccttctactacctccttatggaagctgagggattgtttgtgccggatcatcctgtaattgctcatcttgtagagatgaagagtattgtagaaaagcgtgcggaagttgctgaattgacaaagaatgaccattctaataaggcttag
More
|
|||||||
| Protein seq | MRLGGWMLRPLNRGLLLPTLSCPVAPHRRGFAAYAAALQWLEDELTSLAILPSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSYITFYYLLMEAEGLFVPDHPVIAHLVEMKSIVEKRAEVAELTKNDHSNKA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.028435 | 0.023519 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0441400 | RBH | 0.545132 | 0.279765 | 0.817186 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g32620 | RBH | 0.303787 | 0.136830 | 0.152970 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0441400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0023030 | RBH | 0.000000 | 0.731482 | 0.507540 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022910 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022960 | RBH | 0.000000 | 0.788978 | 0.959963 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0022730 | RBH | 0.449613 | 1.603106 | 1.376959 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0306800 | RBH | 1.2019055 | 2.713588 | 1.370714 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0022490 | RBH | 0.067732 | 0.112284 | 0.194121 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0309700 | RBH | 1.246104 | 2.164319 | 5.925055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0022790 | RBH | 0.000000 | 0.137777 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0022770 | RBH | 0.084680 | 1.258583 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0022890 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0022710 | RBH | 0.101646 | 0.000000 | 0.317889 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0022580 | RBH | 0.082651 | 0.485357 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G022540 | RBH | 0.405114 | 0.000000 | 0.497676 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0022480 | RBH | 0.325908 | 0.000000 | 0.615620 |
