Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsARC_03g0022510 | OGI:03036590 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:19120516-19121706 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | atgcccgaagtgtggtactggttgacatgctcattctcattggacccacaagtctatagtgttAatgtcagtctgttatggagtcgttcggccacggacatccaatggcaactgaaagaagtaacccgaagtcaatcatggaaggattggttgcaaggttgcagacgtcgaggatacgagatggccatgttggtgcaagcttgtccaaggagggctcgaccaaacagttcattcggtcagtccgatatgcagggagaggcatgtgctcaaccgattgcatttcatgtggaagtctcccagcataatgaagacaatattggcattgacatgcagagccttcatattgaacaagctgaacaaacggtggttgcgatgccgagcacggtgcaacaagatgttcGAGTGAAGCCGATGAAGGGgaagagataaatggtatagtggacgagattgagagggttgataggaatgctcgtgaggatgaagctaacttggctcaggaggaggatgaggaggcagatgatgaagagtacgaagtccaacctgttatagcatcatggaaccgtgaagatcttggatatatcggaaagaacgagttgcatgactcggtatggttctatggtgatggcccaataaacaagggcacaatgttttcgacgaagtctgcatttcaggatgcagttaagtcgtggtcgtttaagatgcagaggcagttcaaagttctcaaatcaagcctgaccgtctacactgcggtgtgtgagacggaagggtgcaattttagggttcatgggcAtgtgccaaagtacgagtcgtactggctcgtgtcgagagtggaggagcacaacaactgtatgctaaggaacacaaggtcgtcccaccgcaacctcaCcgcggcgtatgttgctaacaagtactacagcaacattattgAagCGgacgacctgctcgtgaggcatataaTaaaggcagtagagactagtgaacggtacactattagctaccacaaagcgtggagggcgaagcaaaaggcgatggagaaaaggtatggatcattcgaggtggcatatgacacactaccgcaGatcctagatatcctgaaacagagaaatcctggtacctatgttgttgttcaagacagaaatcctggtacctatgttgTtgtccaagacagggattccgtgtgacctccgaatt
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CDS seq | atgcccgaagtgtggtactggttgacatgctcattctcattggacccacaagtctatagtgttAatgtcagtctgttatggagtcgttcggccacggacatccaatggcaactgaaagaagtaacccgaagtcaatcatggaaggattggttgcaaggttgcagacgtcgaggatacgagatggccatgttggtgcaagcttgtccaaggagggctcgaccaaacagttcattcggtcagtccgatatgcagggagaggcatgtgctcaaccgattgcatttcatgtggaagtctcccagcataatgaagacaatattggcattgacatgcagagccttcatattgaacaagctgaacaaacggtggttgcgatgccgagcacggtgcaacaagatgttcGAataaatggtatagtggacgagattgagagggttgataggaatgctcgtgaggatgaagctaacttggctcaggaggaggatgaggaggcagatgatgaagagtacgaagtccaacctgttatagcatcatggaaccgtgaagatcttggatatatcggaaagaacgagttgcatgactcggtatggttctatggtgatggcccaataaacaagggcacaatgttttcgacgaagtctgcatttcaggatgcagttaagtcgtggtcgtttaagatgcagaggcagttcaaagttctcaaatcaagcctgaccgtctacactgcggtgtgtgagacggaagggtgcaattttagggttcatgggcAtgtgccaaagtacgagtcgtactggctcgtgtcgagagtggaggagcacaacaactgtatgctaaggaacacaaggtcgtcccaccgcaacctcaCcgcggcgtatgttgctaacaagtactacagcaacattattgAagCGgacgacctgctcgtgaggcatataaTaaaggcagtagagactagtgaacggtacactattagctaccacaaagcgtggagggcgaagcaaaaggcgatggagaaaaggtatggatcattcgaggtggcatatgacacactaccgcaGatcctagatatcctgaaacagagaaatcctggtacctatgttgttgttcaagacagaaatcctggtacctatgttgTtgtccaagacagggattccgtgtga
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Protein seq | MPEVWYWLTCSFSLDPQVYSVNVSLLWSRSATDIQWQLKEVTRSQSWKDWLQGCRRRGYEMAMLVQACPRRARPNSSFGQSDMQGEACAQPIAFHVEVSQHNEDNIGIDMQSLHIEQAEQTVVAMPSTVQQDVRINGIVDEIERVDRNAREDEANLAQEEDEEADDEEYEVQPVIASWNREDLGYIGKNELHDSVWFYGDGPINKGTMFSTKSAFQDAVKSWSFKMQRQFKVLKSSLTVYTAVCETEGCNFRVHGHVPKYESYWLVSRVEEHNNCMLRNTRSSHRNLTAAYVANKYYSNIIEADDLLVRHIIKAVETSERYTISYHKAWRAKQKAMEKRYGSFEVAYDTLPQILDILKQRNPGTYVVVQDRNPGTYVVVQDRDSV |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsARC_03g0022510 | OsARC_03g0022510.01 | Chr03 | 19120516 | 19121706 | + | NAM | ||
CDS seq | atgcccgaagtgtggtactggttgacatgctcattctcattggacccacaagtctatagtgttAatgtcagtctgttatggagtcgttcggccacggacatccaatggcaactgaaagaagtaacccgaagtcaatcatggaaggattggttgcaaggttgcagacgtcgaggatacgagatggccatgttggtgcaagcttgtccaaggagggctcgaccaaacagttcattcggtcagtccgatatgcagggagaggcatgtgctcaaccgattgcatttcatgtggaagtctcccagcataatgaagacaatattggcattgacatgcagagccttcatattgaacaagctgaacaaacggtggttgcgatgccgagcacggtgcaacaagatgttcGAataaatggtatagtggacgagattgagagggttgataggaatgctcgtgaggatgaagctaacttggctcaggaggaggatgaggaggcagatgatgaagagtacgaagtccaacctgttatagcatcatggaaccgtgaagatcttggatatatcggaaagaacgagttgcatgactcggtatggttctatggtgatggcccaataaacaagggcacaatgttttcgacgaagtctgcatttcaggatgcagttaagtcgtggtcgtttaagatgcagaggcagttcaaagttctcaaatcaagcctgaccgtctacactgcggtgtgtgagacggaagggtgcaattttagggttcatgggcAtgtgccaaagtacgagtcgtactggctcgtgtcgagagtggaggagcacaacaactgtatgctaaggaacacaaggtcgtcccaccgcaacctcaCcgcggcgtatgttgctaacaagtactacagcaacattattgAagCGgacgacctgctcgtgaggcatataaTaaaggcagtagagactagtgaacggtacactattagctaccacaaagcgtggagggcgaagcaaaaggcgatggagaaaaggtatggatcattcgaggtggcatatgacacactaccgcaGatcctagatatcctgaaacagagaaatcctggtacctatgttgttgttcaagacagaaatcctggtacctatgttgTtgtccaagacagggattccgtgtga
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Protein seq | MPEVWYWLTCSFSLDPQVYSVNVSLLWSRSATDIQWQLKEVTRSQSWKDWLQGCRRRGYEMAMLVQACPRRARPNSSFGQSDMQGEACAQPIAFHVEVSQHNEDNIGIDMQSLHIEQAEQTVVAMPSTVQQDVRINGIVDEIERVDRNAREDEANLAQEEDEEADDEEYEVQPVIASWNREDLGYIGKNELHDSVWFYGDGPINKGTMFSTKSAFQDAVKSWSFKMQRQFKVLKSSLTVYTAVCETEGCNFRVHGHVPKYESYWLVSRVEEHNNCMLRNTRSSHRNLTAAYVANKYYSNIIEADDLLVRHIIKAVETSERYTISYHKAWRAKQKAMEKRYGSFEVAYDTLPQILDILKQRNPGTYVVVQDRNPGTYVVVQDRDSV
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g31660 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0022590 | RBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022470 | RBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022540 | RBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0020250 | RBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0297400 | RBH | 0.008301 | 0 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0020030 | RBH | 0.0 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0286300 | RBH | 0.0010365 | 0 | 0 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0020230 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0022340 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0020340 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0020210 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0020080 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G022120 | RBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0022030 | RBH | 0.0 | 0.0 | 0.0 |