Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0022120 | OGI:03047340 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:18687046-18688896 | ||||||||
| Gene Symbol | RLCK112, OsPUB57, OsRLCK112 | ||||||||||
| DNA seq | tcaaaagtttccacagccacctgcagcgaagtcaccattgtctctagctttccttgtctcttcgatgcctagtaacctacagtttaggAaaaattaatgtctccaataaaattatatgtatacatagataaatagctgataccgcataagacattctaattcatcgcaaagtaaagaacaacagtaatagtccggtcatcagatacggaaagaaaaacatctctgagtggagaagtgatgttctcgattaagaaccgcatataatactattccaatattcccacacgcgcaattacagtcttgttattatgcctaagaaattactagttaagtatggatatcagaatcataacaacatccagagctagttaagagcctactactctttgatactttcaggcctcatcgtttgtttatttatatgcttatccgcccgtttattagcaaccaaaaaattaatttgtgggtaaaacttttatatatgtgtccatagcgattcaaaagcaaattctgtaaaataaactacaacaagaaaaacaacaaaatcaacttcaaaattaaaatttgaaaattcaaattttggcttataatcataagcataaccgaaacaatgaggtctgaatatagttccaaaaatcgtagcacttctgaattgccagcaaacgttcccagcacatctggacacttctggccatgtaatacttatacaatattaagtcatgaattcaaatttaaaaggtttaagaaccaagtgttatgatcaaagttgtggagaatcccggatcctaaggtttttatgttctaaggtttcacacaacagagcatatcttaaagacttgaacactaatattgtttataaataatgaagagttaaattagtaatctccatataaaaataaataattcaaaaactttataggcactatgcacgaaaaagtatgtatgcgcagacatgtaatcagtatatacttatattctctggaatttaaacaggagtgtactttatcaaaccttaggaccataatggttatgtgcgctacaagttataataccaaaggatttctgcactttggctattaaatatggggttaactaaaatctactctaaattttaaagttgaaactataatgcctggttaccagtcaaaaattctattttttttgtttgaacatttgtctaacaaattttcccctgatttgctcaacattccatttgttcttcaGAATCTGAGATCACAACAGCCCTCATGTTGTTACTTTCAAAAGGAAAATTCTCATTTAAGAAATTAGGTACCAAACAGCTGTTGTTGGTAAGCAGGGTCAGGAATCCGGCTGCTGCTGCTGCTGAAGATACTCATGGATGGAAGAAAAGAGGACAAGATTAGGGATGAGAGTGAGATTGGGAAGGACCAAGTTTGTCATCGGAGACCTAATATATTCCCTCTATCAAACCAGCTTCTTATGGCTTCTGCTTCATAGGTGAATCCATCAGATGCCATTTGAGGATCTTTCATGATCTCCTGAAATATCAACAAGAGAGTAACATATCACACATGCACCATTAAAATTTTGATCACTGAACATTTCAAGGAAAACAGAAAAGGATATTCACAAGTTGTAGGCACTACATGGAAAAGACCTTGGGAGCATATATCCAGAATTGAAGCTACAAAAATGATGATTACAGATTTATTTACCAGGCTGATTGGACAAATGAAAGCAGAAGGGACACAACTATCTCCTGTTGCTGATTGCAAGTATGGCCAGGgtggctgcaagaggcttcctcgtcaggggctcaacaactttccacactttggttaagagatcaggccgtttcttcctcgtcat
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| CDS seq | atgacgaggaagaaacggcctgatctcttaaccaaagtgtggaaagttgttgagcccctgacgaggaagcctcttgcagccacCCTGGCCATACTTGCAATCAGCAACAGGAGATATGATCAAAATTTTAATGGTGCATGTGAGATCATGAAAGATCCTCAAATGGCATCTGATGGATTCACCTATGAAGCAGAAGCCATAAGAAGCTGgttactaggcatcgaagagacaaggaaagctagagacaatggtgacttcgctgcaggtggctgtggaaacttttga |
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| Protein seq | MTRKKRPDLLTKVWKVVEPLTRKPLAATLAILAISNRRYDQNFNGACEIMKDPQMASDGFTYEAEAIRSWLLGIEETRKARDNGDFAAGGCGNF |
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| Function | U-box domain-containing protein 57 [UniProtKB/Swiss-Prot:Q0DR28] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0022120 | OsARC_03g0022120.01 | Chr03 | 18687046 | 18688896 | - | NAM | ||
| CDS seq | atgacgaggaagaaacggcctgatctcttaaccaaagtgtggaaagttgttgagcccctgacgaggaagcctcttgcagccacCCTGGCCATACTTGCAATCAGCAACAGGAGATATGATCAAAATTTTAATGGTGCATGTGAGATCATGAAAGATCCTCAAATGGCATCTGATGGATTCACCTATGAAGCAGAAGCCATAAGAAGCTGgttactaggcatcgaagagacaaggaaagctagagacaatggtgacttcgctgcaggtggctgtggaaacttttga
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| Protein seq | MTRKKRPDLLTKVWKVVEPLTRKPLAATLAILAISNRRYDQNFNGACEIMKDPQMASDGFTYEAEAIRSWLLGIEETRKARDNGDFAAGGCGNF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.104297 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0424200 | SBH | 0.987426 | 0.979671 | 1.310185 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g31044 | SBH | 0.780454 | 0.419180 | 0.184653 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0424200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0022220 | SBH | 0.270871 | 0.000000 | 2.675037 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022070 | SBH | 0.0 | 0.000000 | 1.686018 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022140 | SBH | 1.325550 | 0.0 | 4.506331 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0022150 | SBH | 0.129453 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0021920 | RBH | 3.019684 | 2.633660 | 7.759162 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0291600 | SBH | 1.3233725 | 3.4862215 | 2.266977 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0021660 | RBH | 0.174948 | 0.0 | 0.390234 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0295200 | SBH | 1.646293 | 6.931258 | 9.9132095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0021950 | RBH | 0.072600 | 0.031236 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0021950 | RBH | 0.247071 | 3.502494 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0022030 | RBH | 0.481490 | 4.765981 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0021900 | RBH | 0.263964 | 0.122739 | 0.196756 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0021760 | RBH | 0.087299 | 0.470475 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G021730 | SBH | 0.181368 | 0.000000 | 0.459045 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0021630 | SBH | 1.572975 | 0.634072 | 2.789150 |
