Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0006130 | OGI:03011550 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:4392892-4394761 | ||||||||
| Gene Symbol | ERF62, OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125, WAP1, OsWAP1, OsSTAP1, STAP1, ERF1, OsERF1, OsRAF | ||||||||||
| DNA seq | TAAAAAAAAACCTGTCTTTCTCTCCCTCTATTTTTTCAGCAGTTATAATCCAAACAAAGCAAAATTGCAGTTGTACAAACCAAAATACATTACGACTGGACTGAATCCAGCAAATTATGATATTCTTACACGATCCATCTCAACATGACAGAGATCAAATGATGGATCGATCAGTGGTACATAAACACCAAGAGGACCAGGTTTTCATAGACTTATTTGACATCATTAACAACCACGACCACGATAATTGACGACGATATTGCCGACATGATCGATTTCATAGGACTATTTGACCAGCAGTACGAAGACCCCGTAAAAGTAGCCCACAAATTAAGAGTACATAAACTTAATATATAGTTTTGATCATAAGATCGGCAGTAGTACAGATTCAGAATCTAATTGACAAACACAAACACCGCAATATAATTCGGTAATCAAGCAAGCCATGATATCAGCTGCACCCCATCATCCTCCGGTTAAACATTCATCAACGACGACGTGATTAACCTGAACCAAGAAATGGCATGGTATCTGATCAAGATATATAATCCTGATGAACAGATGGATTTTAAGTTTTTAACTGAATCCATTAAAATGGAAGTGAATTCAGATGCTTACAATTGAGTGCACAAACTGCATCAATGGAGGAGTACATCAGAAAAGGGCGCCGTCGATTGGGAAGTCGTCGAAGCTCCACAGGTTGACGCCGGCGTTCATGTCGGTGTTCGCGCTGTTGGCGTCGCCGGCGGCGAAGAGGCTGTCGATGGACTCGTAGCCGTCGGAGTAGGGGAGCTGGAACAGCATGAACGGGTCGAACTCCAGCTCGTCGGTGAAACCCAGCGCGTCGCTGCCGCCGCCGACGCTGCCCTCGGACGAGTCGACGTCGTCGGACCTCGCCTTCTTGGCGGGGCTCCCGCCGGACTCCGACGTGGCGACGCTGTCGGTGAAGGAGCTCGTCATCATCATGGCCGGTGGCGGCGCCGCGGCGGTCGTCAGGTCGACGAAGCCGTTGGTGAAGAAAGGTAGCGCGGTCTCAGCAGGCGGCGAGAATTCTCGCTTCAGTCCGCGCGGCGGGGCGGCGGCGGGTGCTGTCGCCGGCGGTGGCACGGCGGTGGCTCTCGTGTTGCCGCGGCGTGGGCGCGCGGCGGCGGGCGTGGCGGGGAAGTTGACCTTGGCCTTGCTGCCGCGGAGGCGGCGCGCCTCGACGTCGTAGGCGCGTGCGGCCTCCTCCGGGGTGTTGAACGTGCCGAGCCAGACGCGCGTGCCCTTGTGCGGGTCGCGGATCTCCGCCGCCCACTTCCCCCATGGCCGCTGCCGGATGCCTCGGAAGTGCCGCCCCCGCTTCTTCTTGCTCGCCGCCCTCGCCGCCGCGCGCCCGTCGTGCCCGGCGACGACTGCACGAACAAAACCAAACCAAACCAATCTTCCTCGGTGAGATCAAGCCAAGAACTCATCGCCATCACGATCGAACACCTAGACGAGATCGCACGCGACGAACATTACCACGAGATTTGGACGCGAACACGAAGTGTCCTTCGTCTTCTTCCTCCGCGTCGTCGAAGTCGGAGTCATCGTCGAACTGCTCGAAGGCGGCCTCGAAGTCGTCGACGTCGGCGAAGCTCCTCTGCTGCCTCTTGCTCTTGCTCTTGCCGCGGGCGGCGTTCTTGGAGCCGGCCGGCCACAGGTGGCTGGCGGTCACCCGCTTGGTCGCCGCCGCGGCGCGCGACGGCGCCGGGATGAACTCGGCGAGGATGGCGCCTCCACACATTGTTCGCGGTTTGGGTCTCCCACTTCTCTTCGACCTTTTTTTAACGTGTTCGTCGTGTTTTTTTTCTTCAAGTGTGTGTTGCGAATGCCTTTGTTCTTGTAA
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| CDS seq | ATGTGTGGAGGCGCCATCCTCGCCGAGTTCATCCCGGCGCCGTCGCGCGCCGCGGCGGCGACCAAGCGGGTGACCGCCAGCCACCTGTGGCCGGCCGGCTCCAAGAACGCCGCCCGCGGCAAGAGCAAGAGCAAGAGGCAGCAGAGGAGCTTCGCCGACGTCGACGACTTCGAGGCCGCCTTCGAGCAGTTCGACGATGACTCCGACTTCGACGACGCGGAGGAAGAAGACGAAGGACACTTCGTGTTCGCGTCCAAATCTCGTGTCGTCGCCGGGCACGACGGGCGCGCGGCGGCGAGGGCGGCGAGCAAGAAGAAGCGGGGGCGGCACTTCCGAGGCATCCGGCAGCGGCCATGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGCACAAGGGCACGCGCGTCTGGCTCGGCACGTTCAACACCCCGGAGGAGGCCGCACGCGCCTACGACGTCGAGGCGCGCCGCCTCCGCGGCAGCAAGGCCAAGGTCAACTTCCCCGCCACGCCCGCCGCCGCGCGCCCACGCCGCGGCAACACGAGAGCCACCGCCGTGCCACCGCCGGCGACAGCACCCGCCGCCGCCCCGCCGCGCGGACTGAAGCGAGAATTCTCGCCGCCTGCTGAGACCGCGCTACCTTTCTTCACCAACGGCTTCGTCGACCTGACGACCGCCGCGGCGCCGCCACCGGCCATGATGATGACGAGCTCCTTCACCGACAGCGTCGCCACGTCGGAGTCCGGCGGGAGCCCCGCCAAGAAGGCGAGGTCCGACGACGTCGACTCGTCCGAGGGCAGCGTCGGCGGCGGCAGCGACGCGCTGGGTTTCACCGACGAGCTGGAGTTCGACCCGTTCATGCTGTTCCAGCTCCCCTACTCCGACGGCTACGAGTCCATCGACAGCCTCTTCGCCGCCGGCGACGCCAACAGCGCGAACACCGACATGAACGCCGGCGTCAACCTGTGGAGCTTCGACGACTTCCCAATCGACGGCGCCCTTTTCTGA
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| Protein seq | MCGGAILAEFIPAPSRAAAATKRVTASHLWPAGSKNAARGKSKSKRQQRSFADVDDFEAAFEQFDDDSDFDDAEEEDEGHFVFASKSRVVAGHDGRAAARAASKKKRGRHFRGIRQRPWGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGSKAKVNFPATPAAARPRRGNTRATAVPPPATAPAAAPPRGLKREFSPPAETALPFFTNGFVDLTTAAAPPPAMMMTSSFTDSVATSESGGSPAKKARSDDVDSSEGSVGGGSDALGFTDELEFDPFMLFQLPYSDGYESIDSLFAAGDANSANTDMNAGVNLWSFDDFPIDGALF |
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| Function | Ethylene-responsive transcription factor 1 [UniProtKB/Swiss-Prot:Q6K7E6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0006130 | OsARC_03g0006130.03 | Chr03 | 4392892 | 4394751 | - | NAM | ||
| CDS seq | ATGTGTGGAGGCGCCATCCTCGCCGAGTTCATCCCGGCGCCGTCGCGCGCCGCGGCGGCGACCAAGCGGGTGACCGCCAGCCACCTGTGGCCGGCCGGCTCCAAGAACGCCGCCCGCGGCAAGAGCAAGAGCAAGAGGCAGCAGAGGAGCTTCGCCGACGTCGACGACTTCGAGGCCGCCTTCGAGCAGTTCGACGATGACTCCGACTTCGACGACGCGGAGGAAGAAGACGAAGGACACTTCGTGTTCGCGTCCAAATCTCGTGTCGTCGCCGGGCACGACGGGCGCGCGGCGGCGAGGGCGGCGAGCAAGAAGAAGCGGGGGCGGCACTTCCGAGGCATCCGGCAGCGGCCATGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGCACAAGGGCACGCGCGTCTGGCTCGGCACGTTCAACACCCCGGAGGAGGCCGCACGCGCCTACGACGTCGAGGCGCGCCGCCTCCGCGGCAGCAAGGCCAAGGTCAACTTCCCCGCCACGCCCGCCGCCGCGCGCCCACGCCGCGGCAACACGAGAGCCACCGCCGTGCCACCGCCGGCGACAGCACCCGCCGCCGCCCCGCCGCGCGGACTGAAGCGAGAATTCTCGCCGCCTGCTGAGACCGCGCTACCTTTCTTCACCAACGGCTTCGTCGACCTGACGACCGCCGCGGCGCCGCCACCGGCCATGATGATGACGAGCTCCTTCACCGACAGCGTCGCCACGTCGGAGTCCGGCGGGAGCCCCGCCAAGAAGGCGAGGTCCGACGACGTCGACTCGTCCGAGGGCAGCGTCGGCGGCGGCAGCGACGCGCTGGGTTTCACCGACGAGCTGGAGTTCGACCCGTTCATGCTGTTCCAGCTCCCCTACTCCGACGGCTACGAGTCCATCGACAGCCTCTTCGCCGCCGGCGACGCCAACAGCGCGAACACCGACATGAACGCCGGCGTCAACCTGTGGAGCTTCGACGACTTCCCAATCGACGGCGCCCTTTTCTGA
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| Protein seq | MCGGAILAEFIPAPSRAAAATKRVTASHLWPAGSKNAARGKSKSKRQQRSFADVDDFEAAFEQFDDDSDFDDAEEEDEGHFVFASKSRVVAGHDGRAAARAASKKKRGRHFRGIRQRPWGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGSKAKVNFPATPAAARPRRGNTRATAVPPPATAPAAAPPRGLKREFSPPAETALPFFTNGFVDLTTAAAPPPAMMMTSSFTDSVATSESGGSPAKKARSDDVDSSEGSVGGGSDALGFTDELEFDPFMLFQLPYSDGYESIDSLFAAGDANSANTDMNAGVNLWSFDDFPIDGALF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0006130 | OsARC_03g0006130.02 | Chr03 | 4392892 | 4394751 | - | NAM | ||
| CDS seq | ATGTGTGGAGGCGCCATCCTCGCCGAGTTCATCCCGGCGCCGTCGCGCGCCGCGGCGGCGACCAAGCGGGTGACCGCCAGCCACCTGTGGCCGGCCGGCTCCAAGAACGCCGCCCGCGGCAAGAGCAAGAGCAAGAGGCAGCAGAGGAGCTTCGCCGACGTCGACGACTTCGAGGCCGCCTTCGAGCAGTTCGACGATGACTCCGACTTCGACGACGCGGAGGAAGAAGACGAAGGACACTTCGTGTTCGCGTCCAAATCTCGTGTCGTCGCCGGGCACGACGGGCGCGCGGCGGCGAGGGCGGCGAGCAAGAAGAAGCGGGGGCGGCACTTCCGAGGCATCCGGCAGCGGCCATGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGCACAAGGGCACGCGCGTCTGGCTCGGCACGTTCAACACCCCGGAGGAGGCCGCACGCGCCTACGACGTCGAGGCGCGCCGCCTCCGCGGCAGCAAGGCCAAGGTCAACTTCCCCGCCACGCCCGCCGCCGCGCGCCCACGCCGCGGCAACACGAGAGCCACCGCCGTGCCACCGCCGGCGACAGCACCCGCCGCCGCCCCGCCGCGCGGACTGAAGCGAGAATTCTCGCCGCCTGCTGAGACCGCGCTACCTTTCTTCACCAACGGCTTCGTCGACCTGACGACCGCCGCGGCGCCGCCACCGGCCATGATGATGACGAGCTCCTTCACCGACAGCGTCGCCACGTCGGAGTCCGGCGGGAGCCCCGCCAAGAAGGCGAGGTCCGACGACGTCGACTCGTCCGAGGGCAGCGTCGGCGGCGGCAGCGACGCGCTGGGTTTCACCGACGAGCTGGAGTTCGACCCGTTCATGCTGTTCCAGCTCCCCTACTCCGACGGCTACGAGTCCATCGACAGCCTCTTCGCCGCCGGCGACGCCAACAGCGCGAACACCGACATGAACGCCGGCGTCAACCTGTGGAGCTTCGACGACTTCCCAATCGACGGCGCCCTTTTCTGA
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| Protein seq | MCGGAILAEFIPAPSRAAAATKRVTASHLWPAGSKNAARGKSKSKRQQRSFADVDDFEAAFEQFDDDSDFDDAEEEDEGHFVFASKSRVVAGHDGRAAARAASKKKRGRHFRGIRQRPWGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGSKAKVNFPATPAAARPRRGNTRATAVPPPATAPAAAPPRGLKREFSPPAETALPFFTNGFVDLTTAAAPPPAMMMTSSFTDSVATSESGGSPAKKARSDDVDSSEGSVGGGSDALGFTDELEFDPFMLFQLPYSDGYESIDSLFAAGDANSANTDMNAGVNLWSFDDFPIDGALF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0006130 | OsARC_03g0006130.01 | Chr03 | 4392892 | 4394761 | - | NAM | ||
| CDS seq | ATGTGTGGAGGCGCCATCCTCGCCGAGTTCATCCCGGCGCCGTCGCGCGCCGCGGCGGCGACCAAGCGGGTGACCGCCAGCCACCTGTGGCCGGCCGGCTCCAAGAACGCCGCCCGCGGCAAGAGCAAGAGCAAGAGGCAGCAGAGGAGCTTCGCCGACGTCGACGACTTCGAGGCCGCCTTCGAGCAGTTCGACGATGACTCCGACTTCGACGACGCGGAGGAAGAAGACGAAGGACACTTCGTGTTCGCGTCCAAATCTCGTGTCGTCGCCGGGCACGACGGGCGCGCGGCGGCGAGGGCGGCGAGCAAGAAGAAGCGGGGGCGGCACTTCCGAGGCATCCGGCAGCGGCCATGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGCACAAGGGCACGCGCGTCTGGCTCGGCACGTTCAACACCCCGGAGGAGGCCGCACGCGCCTACGACGTCGAGGCGCGCCGCCTCCGCGGCAGCAAGGCCAAGGTCAACTTCCCCGCCACGCCCGCCGCCGCGCGCCCACGCCGCGGCAACACGAGAGCCACCGCCGTGCCACCGCCGGCGACAGCACCCGCCGCCGCCCCGCCGCGCGGACTGAAGCGAGAATTCTCGCCGCCTGCTGAGACCGCGCTACCTTTCTTCACCAACGGCTTCGTCGACCTGACGACCGCCGCGGCGCCGCCACCGGCCATGATGATGACGAGCTCCTTCACCGACAGCGTCGCCACGTCGGAGTCCGGCGGGAGCCCCGCCAAGAAGGCGAGGTCCGACGACGTCGACTCGTCCGAGGGCAGCGTCGGCGGCGGCAGCGACGCGCTGGGTTTCACCGACGAGCTGGAGTTCGACCCGTTCATGCTGTTCCAGCTCCCCTACTCCGACGGCTACGAGTCCATCGACAGCCTCTTCGCCGCCGGCGACGCCAACAGCGCGAACACCGACATGAACGCCGGCGTCAACCTGTGGAGCTTCGACGACTTCCCAATCGACGGCGCCCTTTTCTGA
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| Protein seq | MCGGAILAEFIPAPSRAAAATKRVTASHLWPAGSKNAARGKSKSKRQQRSFADVDDFEAAFEQFDDDSDFDDAEEEDEGHFVFASKSRVVAGHDGRAAARAASKKKRGRHFRGIRQRPWGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGSKAKVNFPATPAAARPRRGNTRATAVPPPATAPAAAPPRGLKREFSPPAETALPFFTNGFVDLTTAAAPPPAMMMTSSFTDSVATSESGGSPAKKARSDDVDSSEGSVGGGSDALGFTDELEFDPFMLFQLPYSDGYESIDSLFAAGDANSANTDMNAGVNLWSFDDFPIDGALF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0006130 | OsARC_03g0006130.04 | Chr03 | 4393212 | 4394751 | - | IsoSeq | ||
| CDS seq | AAAGGCATTCGCAACACACACTTGAAGAAAAAAAACACGACGAACACGTTAAAAAAAGGTCGAAGAGAAGTGGGAGACCCAAACCGCGAACAATGTGTGGAGGCGCCATCCTCGCCGAGTTCATCCCGGCGCCGTCGCGCGCCGCGGCGGCGACCAAGC |
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| Protein seq | KGIRNTHLKKKNTTNTLKKGRREVGDPNREQCVEAPSSPSSSRRRRAPRRRPS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 4393398 | 4393510 | - | OsARC_03g0006130.02 | OsARC_03g0006130.04,OsARC_03g0006130.02,OsARC_03g0006130.01 | All |
| A3 | Chr03 | 4394042 | 4394395 | - | OsARC_03g0006130.02,OsARC_03g0006130.03,OsARC_03g0006130.01 | OsARC_03g0006130.04,OsARC_03g0006130.01,OsARC_03g0006130.02,OsARC_03g0006130.03 | All |
| RI | Chr03 | 4392892 | 4394285 | - | OsARC_03g0006130.03 | OsARC_03g0006130.02,OsARC_03g0006130.03 | All |
| RI | Chr03 | 4392892 | 4394285 | - | OsARC_03g0006130.03 | OsARC_03g0006130.03,OsARC_03g0006130.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.169850 | 9.497226 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0183000 | RBH | 0.155110 | 0.0 | 15.318903 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g08470 | RBH | 0.093649 | 0.0 | 3.918586 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0183000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0006160 | RBH | 1.198274 | 361.309540 | 15.081750 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0006120 | RBH | 0.0 | 54.016788 | 6.587920 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0006140 | RBH | 0.253855 | 179.009628 | 8.546234 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0023200 | RBH | 0.119406 | 1.634884 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0006080 | RBH | 0.941400 | 136.303986 | 12.139943 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0070800 | RBH | 9.688219 | 331.557205 | 8.394368 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0005980 | RBH | 0.000000 | 19.308022 | 0.739050 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0071000 | RBH | 7.6000085 | 322.6511535 | 0.443704 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0006040 | RBH | 0.046991 | 2.512599 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0006060 | RBH | 0.0 | 144.647995 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0006050 | RBH | 1.426847 | 186.038635 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0006070 | RBH | 0.282043 | 20.768099 | 1.892801 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0006060 | RBH | 0.147860 | 117.887291 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G006090 | RBH | 0.188216 | 46.412422 | 4.420815 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0005910 | RBH | 0.284069 | 425.846649 | 9.068213 |
