Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0002980 | OGI:03005890 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:2191207-2193894 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATCGGATCCCACCCCAGCCGCCACCATGTCGAAGCGAGGTAAACCATTCTTCCTCTTCGTTCCCACTCGATCCGTGGAATATTTTTCCATTCGATTCAACCACTGTGCTTGCAAATCTTGCGCTCTAATCTGTTTGTTTCGTGTTGCGATCTGATGGTGATGCAGGGAGGGGAGGGTCGGCGGGGAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGCGCGGACAACACCGGGGCCAAGAACCTCTACATCATCTCCGTGAAGGGCATCAAGGGCCGCCTCAACCGCCTCCCGTCCGCCTGCGTCGGCGACATGGTCATGGCCACCGTCAAGAAGGGCAAGCCCGATCTCCGTAAGAAGGTCATGCCCGCCGTCATCGTCCGCCAGCGCAAGCCGTGGCGCCGCAAGGACGGTGTGTACATGTACTTCGAAGGTATTATTCACAGATGACCTCTTACACCTCTTACACCTGTTGTTTTGTTGTTGTAATTATCATGTGATGCGAAATTTGAACCCTATATTATACTTGTGTGCTTTGCTACTGTGTCTACATGTACTTCGAAGGTATTATTCACAGATCACCTCTTACACCTGTTGTTTTATTCTTGCAATAATCGTGTGTTGCGAAATTTGAACCCTATATTATACCTGTGTCCTTTGCTACTGTTAGTTTAGATGTTTGGTTAGAGTGTGGATGACGGGAGGGCCGCCGGGCTCTCCAGCTTAAACTGGAGCAGATATTACAGTATCTGTATATTCCAAAGTAAACGTCAGAGATTAAGCCCTCGGGTGTTGAGGTTTTTGCATGAAAGATTTTTCTTTTATCCATGTCCTCCATCTGTGGGCTGCCTCATATTCCATTGCCTTGTGTAGCAGCGTTGCTGCCTTGAAAATTTGGGATTGGCCATGAGGCGAATATTCCCCCAACCTAAAATTCAAATATGCCCTATTTTTCTTGTGCTGTATTTAATTCTCTGTAATATTCATGGTAATTTTTATCTTACGTTATATCAGTGAATATCATTCTAGATGAGATCATTTTAAAATAGACATGAGTCATCATTTTTATTGCACACAGTTACACCATTTCTCATTTTTTTTTATTTTGTACTTTTTATTTCTACAAATGTATTTTGTTATTTCCATATCCAATCCTAGAGTTGTACTTTGTATGACAAATTTATAATTGTTCAGCACTCTGTTTTTGTTGTGATTAACTTGTACACTTTACTGCTTGACGGGGGGACATCCGAGTCCTTCAGCCTTTAAGGAGCAAACCTCACATGTTTGCATATTCCTAGGCAAACGTCATAAAGTAAGCCTTTGGGTGTTGAGGTTTTCCTTGTGACTTCCTCCATCTGATGGCAGACTCATATTCCATGGCCCTTGTTAGCGGCGTTGTTGCAATTAAACATTGGGTCTTGGCCATGAGGCAATCATTTTAAATGCTTCCTAACAATCATATTTTGTTCTCTGTTAGATATCTTACATTTTATTTGGAACTTCTTTTGTTATCCCATGCAACATTTCTTCTATTGACGGGGGGACATTCGAGTCCTTCAGCATTTTTTTGGAGCAAACCTTACATGTTTGCATAGTCCTAATCTAACGTCATAAAGTAAGCCTGTGGATGTTGAGGTTTTTTCAGAATTCCTCCATCTGTTGGCAGACTCATATTCCATGGCCCTTGTTAGTGGCGTTGTTGCAATTAAACATTGGGTCTAGGCCATGAGGCAGTCATTTTAAAAGCTCACCTTCAATTTTCTCATTTGTATTTGTAATGCCTAAAGTTGTTGCTATTTGACGGAGGGACATCCGAGTCCCTCAACCTTTTTGGAGCAAACCTCATGTTTGCATAGTCCCAGGTAGACGTCATAAAGTAAACATTTGGATGTTGAGGTTTTCCCTAGGAATTGCTCCATCTGAATGTAGACTCATATTCCATGGCCCTTGTTAGTGGCGTTGCTGCAATTAAACATTCGGTCTAGGCCATGAGGCAGTCATTTTGGAAAATCAATTATTCCATATTTTCATATAAGTTGTTCTTGGACTGGTAGTTATTATTAGTTTGCTTGGTTTATTTTGCTACTCCTATGATAAACTCCAAAACCATTTAGCTGATTGTTGTTGTGATTCATTTGCAGATAATGCTGGAGTGATTGTGAATCCTAAGGGTGAGATGAAAGGTAACAATGCAGAACTTGACTTTCTTGATGCTGAATAATCTAAATTGGACATGTTAACTGACTATATATGGTCTATATGTTCTATCAGGTTCTGCTATCACTGGACCCATCGGGAAGGAGTGTGCTGACCTTTGGCCTAGGATAGCTAGTGCAGCAAATGCTATTGTCTGAGCTTGTTTGAATGAATTGTAAGACAGCTATATGACCTCAGGATCGTCTGCAAATGGTTTACTAGGACAACTGTGGAACTTTGTGATGCTATCGTTTGTTTGCCCGTTTCAGTTTTGTAGTGAACAGAAGTTGCCATCCATATGATATTTTATTTGCCATATATCTTTCTGCTGTTCTCGTGTATGATTGAAATGTGTGGTGTTGTCAAATGATGCCTGCAGTTGATTTTACGTTTTGCTGTAATTATCTAGAAAAAACGTTATTTAGTTTGCTTGGGTTGTCTATTTCAATTGTGCAGCTGGCAATTTTCTTG
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| CDS seq | ATGTCGAAGCGAGGGAGGGGAGGGTCGGCGGGGAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGCGCGGACAACACCGGGGCCAAGAACCTCTACATCATCTCCGTGAAGGGCATCAAGGGCCGCCTCAACCGCCTCCCGTCCGCCTGCGTCGGCGACATGGTCATGGCCACCGTCAAGAAGGGCAAGCCCGATCTCCGTAAGAAGGTCATGCCCGCCGTCATCGTCCGCCAGCGCAAGCCGTGGCGCCGCAAGGACGGTGTGTACATGTACTTCGAAGATAATGCTGGAGTGATTGTGAATCCTAAGGGTGAGATGAAAGGTTCTGCTATCACTGGACCCATCGGGAAGGAGTGTGCTGACCTTTGGCCTAGGATAGCTAGTGCAGCAAATGCTATTGTCTGA
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| Protein seq | MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV |
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| Function | 60S ribosomal protein L23 [UniProtKB/Swiss-Prot:P49690] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0002980 | OsARC_03g0002980.03 | Chr03 | 2191208 | 2193894 | + | NAM | ||
| CDS seq | ATGTCGAAGCGAGGGAGGGGAGGGTCGGCGGGGAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGCGCGGACAACACCGGGGCCAAGAACCTCTACATCATCTCCGTGAAGGGCATCAAGGGCCGCCTCAACCGCCTCCCGTCCGCCTGCGTCGGCGACATGGTCATGGCCACCGTCAAGAAGGGCAAGCCCGATCTCCGTAAGAAGGTCATGCCCGCCGTCATCGTCCGCCAGCGCAAGCCGTGGCGCCGCAAGGACGGTGTGTACATGTACTTCGAAGATAATGCTGGAGTGATTGTGAATCCTAAGGGTGAGATGAAAGGTTCTGCTATCACTGGACCCATCGGGAAGGAGTGTGCTGACCTTTGGCCTAGGATAGCTAGTGCAGCAAATGCTATTGTCTGA
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| Protein seq | MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0002980 | OsARC_03g0002980.04 | Chr03 | 2191208 | 2193894 | + | NAM | ||
| CDS seq | ATGTCGAAGCGAGGGAGGGGAGGGTCGGCGGGGAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGCGCGGACAACACCGGGGCCAAGAACCTCTACATCATCTCCGTGAAGGGCATCAAGGGCCGCCTCAACCGCCTCCCGTCCGCCTGCGTCGGCGACATGGTCATGGCCACCGTCAAGAAGGGCAAGCCCGATCTCCGTAAGAAGGTCATGCCCGCCGTCATCGTCCGCCAGCGCAAGCCGTGGCGCCGCAAGGACGGTGTGTACATGTACTTCGAAGATAATGCTGGAGTGATTGTGAATCCTAAGGGTGAGATGAAAGGTTCTGCTATCACTGGACCCATCGGGAAGGAGTGTGCTGACCTTTGGCCTAGGATAGCTAGTGCAGCAAATGCTATTGTCTGA
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| Protein seq | MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0002980 | OsARC_03g0002980.01 | Chr03 | 2191207 | 2193894 | + | NAM | ||
| CDS seq | ATGTCGAAGCGAGGGAGGGGAGGGTCGGCGGGGAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGCGCGGACAACACCGGGGCCAAGAACCTCTACATCATCTCCGTGAAGGGCATCAAGGGCCGCCTCAACCGCCTCCCGTCCGCCTGCGTCGGCGACATGGTCATGGCCACCGTCAAGAAGGGCAAGCCCGATCTCCGTAAGAAGGTCATGCCCGCCGTCATCGTCCGCCAGCGCAAGCCGTGGCGCCGCAAGGACGGTGTGTACATGTACTTCGAAGGTATTATTCACAGATGA
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| Protein seq | MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEGIIHR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0002980 | OsARC_03g0002980.02 | Chr03 | 2191207 | 2192199 | + | NAM | ||
| CDS seq | ATGTCGAAGCGAGGGAGGGGAGGGTCGGCGGGGAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGCGCGGACAACACCGGGGCCAAGAACCTCTACATCATCTCCGTGAAGGGCATCAAGGGCCGCCTCAACCGCCTCCCGTCCGCCTGCGTCGGCGACATGGTCATGGCCACCGTCAAGAAGGGCAAGCCCGATCTCCGTAAGAAGGTCATGCCCGCCGTCATCGTCCGCCAGCGCAAGCCGTGGCGCCGCAAGGACGGTGTGTACATGTACTTCGAAGGTATTATTCACAGATGA
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| Protein seq | MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEGIIHR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 2191373 | 2191788 | + | OsARC_03g0002980.01 | OsARC_03g0002980.04,OsARC_03g0002980.01 | All |
| A5 | Chr03 | 2191657 | 2193369 | + | OsARC_03g0002980.01 | OsARC_03g0002980.01,OsARC_03g0002980.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.736466 | 10.847833 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0139100 | RBH | 35.037422 | 26.862570 | 75.653915 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g04590 | RBH | 21.885656 | 16.565447 | 18.635952 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0139100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0003050 | RBH | 10.172306 | 137.582016 | 50.341011 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0003010 | RBH | 2.959542 | 75.535706 | 31.509277 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0003050 | RBH | 64.017723 | 415.569672 | 112.922287 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0013960 | RBH | 1.787465 | 9.824828 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0003050 | RBH | 64.037193 | 272.839478 | 112.137100 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0034300 | RBH | 61.2996385 | 64.429625 | 58.5375115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0002970 | RBH | 5.549601 | 25.089884 | 14.785480 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0035600 | RBH | 59.895531 | 31.6281655 | 85.7959255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0003060 | RBH | 4.018589 | 4.763651 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0003050 | RBH | 9.852276 | 358.862457 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0003020 | RBH | 52.362579 | 296.096649 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0003110 | RBH | 4.233513 | 10.100018 | 4.665747 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0003040 | RBH | 4.225475 | 150.260910 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G003060 | RBH | 6.587312 | 138.074722 | 35.251598 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0002910 | RBH | 24.203577 | 268.247223 | 116.527695 |
