Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0038270 | OGI:02098620 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:34997460-34997996 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaggtccggcattttaggtgacgcattgctattgcccttaaaataggttggtttggattccgagcaagctgttcccggattttcttcttcagttcaccttccttgcgccttgcttcctgttcctcttccgcccgggcagtctcataatcagcgcccgccgcgcgcgctgctcttatccttttctcatcgaagtgaaactcaactctgagctggacttcgttgatgtttaggagaaactcTagcccagaaaacccaatttcattttttattagcccttcgacctgcagccgctcaagtttgagcattgttccttcctcaaacttcactgatttggTgccccataaatctgcaagcttgagcaccctgaggcttccaaaagcagttccagtctgtggaggcttgaaatgaaattcttcaccctgaaacggtgaaatcactagaatttccagcttcggtagtttcccaaggaattccatagcaacatcgtgctccaatagcctagcgcccacacgagatgctggagctccttgatccat
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| CDS seq | atggatcaaggagctccagcatctcgtgtgggcgctaggctattggagcacgatgttgctatggaattccttgggaaactaccgaagctggaaattctagtgatttcaccgtttcagggtgaagaatttcatttcaagcctccacagactggaactgcttttggaagcctcagggtgctcaagcttgcagatttatggggcAccaaatcagtgaagtttgaggaaggaacaatgctcaaacttgagcggctgcaggtcgaagggctaataaaaaatgaaattgggttttctgggctAgagtttctcctaaacatcaacgaagtccagctcagagttgagtttcacttcgatgagaaaaggataagagcagcgcgcgcggcgggcgctgattatgagactgcccgggcggaagaggaacaggaagcaaggcgcaaggaaggtgaactgaagaagaaaatccgggaacagcttgctcggaatccaaaccaacctattttaagggcaatagcaatgcgtcacctaaaatgccggacctga
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| Protein seq | MDQGAPASRVGARLLEHDVAMEFLGKLPKLEILVISPFQGEEFHFKPPQTGTAFGSLRVLKLADLWGTKSVKFEEGTMLKLERLQVEGLIKNEIGFSGLEFLLNINEVQLRVEFHFDEKRIRAARAAGADYETARAEEEQEARRKEGELKKKIREQLARNPNQPILRAIAMRHLKCRT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0038270 | OsARC_02g0038270.01 | Chr02 | 34997460 | 34997996 | - | NAM | ||
| CDS seq | atggatcaaggagctccagcatctcgtgtgggcgctaggctattggagcacgatgttgctatggaattccttgggaaactaccgaagctggaaattctagtgatttcaccgtttcagggtgaagaatttcatttcaagcctccacagactggaactgcttttggaagcctcagggtgctcaagcttgcagatttatggggcAccaaatcagtgaagtttgaggaaggaacaatgctcaaacttgagcggctgcaggtcgaagggctaataaaaaatgaaattgggttttctgggctAgagtttctcctaaacatcaacgaagtccagctcagagttgagtttcacttcgatgagaaaaggataagagcagcgcgcgcggcgggcgctgattatgagactgcccgggcggaagaggaacaggaagcaaggcgcaaggaaggtgaactgaagaagaaaatccgggaacagcttgctcggaatccaaaccaacctattttaagggcaatagcaatgcgtcacctaaaatgccggacctga
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| Protein seq | MDQGAPASRVGARLLEHDVAMEFLGKLPKLEILVISPFQGEEFHFKPPQTGTAFGSLRVLKLADLWGTKSVKFEEGTMLKLERLQVEGLIKNEIGFSGLEFLLNINEVQLRVEFHFDEKRIRAARAAGADYETARAEEEQEARRKEGELKKKIREQLARNPNQPILRAIAMRHLKCRT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0818450 | RBH | 0.285548 | 0.0 | 0.697914 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g57305 | RBH | 0.137242 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0818450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0038770 | RBH | 0.058725 | 1.989172 | 0.479221 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0038800 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0038640 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0038340 | SBH | 1.277029 | 0.843036 | 6.294262 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0572300 | SBH | 1.969734 | 10.37338 | 7.4842555 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0038010 | SBH | 0.055218 | 0.039342 | 0.203820 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0603600 | SBH | 1.975659 | 10.597017 | 2.239407 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0038320 | RBH | 0.000000 | 0.029762 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0038230 | SBH | 0.383285 | 4.849597 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0038360 | SBH | 3.080095 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0038380 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0038030 | SBH | 0.130808 | 0.722978 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G038700 | RBH | 0.044022 | 0.0 | 0.107982 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0038550 | RBH | 0.0 | 3.680683 | 0.0 |
