Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0037770 | OGI:02097840 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:34681902-34690917 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | accacgctaccaccacacttgccgaacccacggcggcggcgacgacggcgcgagcgacccaaacctaaacctcccaacccctcctcctccgccgccgacgccgccgcagctgccatgtcgaagaaatcacgcggcgggggcgggggcgctgccgccggcgaggatcccgaggacctctcccgctcgcccctccaagccgtcctcctcgccgacagcttcacgctcaagttccgccccatcaccctcgagcgccccaaggtaccctcaaaccctacctccggtgggcacctccgccccctcccctcccctcgcgcgcgcttgcttgagttcatcccgctgcctcgcaggtgctgctgccgctggtgaatgtcccgatgatcgagtacacgctctcgtggctggaatcggcgggggtagaggagtgcttcgtcttctgctgcgcgcacgcgcagcaggtcaaggagcacctggggAaggcggggtggaccgggaagcctgcggcgagggagatgaccgtcacggctgtggaatcgcacgacgcgatcagcgcgggcgacgcgctgcgcgtcatgtacggccgtggagttgtgagtgttcaatccctatccttacagtggatctctatgaacaattctagtgctaagattttggtgctgttatgacccaacaatattgtctcatggtagacatttgtttagaagctagaactgataactgatgtgtagattgctgcacagtggatgtttttgtttgtgctatttggattcatttaaggaatataagtaggaaaaagctatactggttctgtctaaataTttctctctctagttgagttcatcttagaaatcaactttaccactcgattctgtgaatacttctagtttgccaatctagtaataatgtcttgcatctagattattgttgtcccaagttgctagttgctacatgctgcagcctctgcttaactgttttgacatgttctgttctcctccttcaatgtagatacatggagattttgttctaatcagtggtgataCcatcagcaacatgaatttgaaagacgctctccaggaacataaggatagaaggaaaaaggacccacttgctgtcatgactatggttataaagcattcaaaaccttcgatcctaacgaaccaaacacggttaggtaatgacgaaattgttatggcgatagatcctgagactaaagaactactgtattatgaggacagggcagatgtctcaaacctgtatgtgacaattgataaggacatactggccagtaatcctactctccaaTtTGCGTAATAACATGGAGGTCTGCTTTTAAACTTCAACACATAATGTCTTCTTCTTTTTTTCTTTTTGTAATAACTGTTTCTGTTATGTGTTGCAAGATCACGCCTAACATTCTTCATTACTTCAAATCTACCTACTTTTCACAGATCTTCTTTTACTTATGTTCGCAGGACTGCTATATTGATATATGCTCACCAGAAGTTCTTAGTCTTTTTACGGATAACTTTGATTACCAACATCTTCGGCGCCATTTCGTTAAGGGTTTACTAGTTGATGATGTAAGTCCATTCACTTCTGTTGAACATCTATAATACTACAGATTATGCTGTCTGTTCTTATATTTCTCTTGTAACGAATGACCTACTTCCTGATCCTTTCAGATTATGGGGTATAAAATATATACCCATGAAATACGCTCAAGTTATGctgccagaatagataattttaggagctatgatactgtgagtaaggatataattcaaaggtggacttaccctatggtgcctgatgtcctgtctttcggtgatcgtcaagaaatcaaacttcatcggcagggaatctataaggcatcaggtatatggaatgaaaatAaatttccacaatgttgattgattttcacttgctcctagattcattgttctgaaattctagattttttcgctcatgttatttatagagtactcttatttaaaattgtttagtttggtatctggttttacaaaatttcttgtgctgatgtgtgatttcttgctaactagtcatcaaatagcctaaattagtatatttatttcgtgtaaactaatggAaattgcttctaggtatatatgtatgttccaaagatgcttagtttgcaggtcatcatgtttatctgttacgcaaatcattcagtgaacaatgaaagttatggttgcatagtgagtgtaacgattcatatctaacttctatgttatgcttctttagtattttgtggggctgttgttgaatttttatttttatttgttttaaaatatcttgggtatgccaccctgaaccccacccacccatcatttatgactatatatgaaagttcctcctggtgaagtaaatacaattatctatctatctatatatcaactgagcatgtttttttttccagatgtaacactgtcacattctgcacaaattggtgccaattctgttGttggcaatgggacaagcgttggagaaaactgcaaggtatccaattcagttataggacaaGgctgcAatattgggaaaaatgttttgattcatggatcctatatatgggacaatgtcacaattgaagatggatgcaaagtgagtaattcactagtctgtgatggcgttcatttaggggcaggggctattgttgaacctggctgcatactgtcatttaaggtatGttagtagagtatacatagttattttttaatcgtgaaacaatagtagaatattcctagttaatgatcatctccttatccttttaacaaaaagatagccctgtggacaatatgctcatactttcatcatttaggttgaagttggAaagaatgttgttgttcctgcctattcAaaagtggcattgctccctcagccttcaaatgaagacagtgatgaggagcttgagtatgctgacaccaattctggagttacagatagtccacgttagtcataccttggaactgttatgtattcttagtaccagacatttccagttgctctaatgaggattttgacttgtaatatccatgttttacattttaatttgtgaactgtgtttctttccatgcagccttttccagcatgaggagtgctgaccacccaactgtatctgatgatgatgacttagaggcatcggaggtattactctactgttatttggtgactcagtgcaatggtcttttatgcatgtttgaaattgttcactgtgggtgaggaataacctacagatactttggtgatacattttttcattctcatgatctcataatcactgggtttctgtttacgatgctattgactagactggaacatgtggtgtcgttggttacgtatGggaaaatgttgatgctggaattcaggaagaatggagacaatcaaTtgctccaattcctaaagataagcttgaagagttgcagcatgctgcgtcttttgatgacgatgatgatggatcagaagatgactttAaaaatcggccaactgtactggaccaagatgatgattctgatgttagcgcggttgaggatgatgattattctaagtttgagaaagaggttattactgcataatcgaaaatttgacacacacacacacagctttttcttgttccctttTgctgatttgttgaccttatctaggtggaagagactttccaaagggcgttggatggtatccatcaagataacttgatactagaaattaatgcactcaggtataaaatcttaacttgtacttcatgcgtttcaaagttactaaatatataaagctgcgatacatataagtaagcatgggcatcattttgcgctctaggagatttcattttgagaaacCaatggcaaccgcaaacagagAAaaagccaattttacacagaaaacatatattttatttgacttcttgtattagttttaaagctcaaatataaagtagatattttattcttttgccaaagatgctatgataaagcgctccttttcttattactaaccaaattacccatgcattgtgttggGttTaaaactatatataTtatacagttttttagaccaaagtcgatcacagattgatccagctttataacaaagcaaagacaggacattttcgtttacagccaacagagtactaaaaggaacaaacaaaagcagaaccaggctAaaaactgagggtaaaacgcctgggaactccagcttacaaagcacagcatcatctaacaaaaACcagcaactttagccccagcaacccgcagcaacgaacttcagatctcgataggcaAcacatcagttggtcttaagcttcgagtcttcgttgttagcctgtcaatgataccttccatattgtctcgtccttcttgtgtctggagcaactgtcatattGTAACTACCCAATTGCCTTGAAGATCAGCTGTGCAGGAGATATAATCAAAATATTTTCAAACACGAAATCATTCCTTGTGGTCCACAAGGTCCAGCATACAGCTGCCAGGGTCAGCACAGAACAATTTAGCTGTTTACCACTTCTCTTCTCTACCCCTATTAACCTAAAGAAATCCTCCCAGTCCCGTGGAACCATCCCAAAACATCTCTCACCACACTCCAAGTAAAATATGCTACAGGGCAATTATACAAGATATGATCAGTGTTTTCAACCTCCCCAATTCCTCTTCCTAAGTTGCACAGCACTCAGGATTCTGTCCCAAGAAACCATATACAAAAATTGTTTTATTTTAAAGGGATTTTGGTTTTCCAAATTATCATTGTTCTACTGTCTTTCACCCCTCCAATAGTGATCAATCTATACAGTGATTTTGCTGAATACTCCCCTTCTTTCTTATGTGGCCATATCATTCATCTCTTTGGTTGTTGAACTCAGGTATCCCTATCATCTCTTTCAGCTTCTCAAAATCTTATCTTCCTGCCTCAACTTCTTCTAAAGTTACTCCCATTTACCCTCTTTCACCATCTCCTTCACCAGCTTCCCTTTTTGGGTACTTATTGCATGCAAACTCTGAGAAAACACTATATAAAGTGACATGTGCAACACAATTTAGTCGTCTATGTAATATACTACTTCCctccgtttcacaatgtaagactttctagcattgttcacattcatatagatgctaatgaatctatatataataatgtctagattcattagcatctatatgaatatgggcaatgctagaaagtcttacattgtgaaacggagggagtacaaaacaaagaggtggtggtgggatggcggactcaccactaccattaccattagcttctgttatacaatagagactattcatctatcaaagcttctctcaaaattttatgaccttatgtttagttctgtctatgctgtgtctatatccaccatagttgattgattttgtgcaatgtcatccttacttttcaggttatcttatagccttcaacatgcagactgtgctggagctttgttccattccgttatgagaagtgcattagtggctgcacaatctactaatggtatgtatttatgcttgtgaaaattaagtgagcagtagttacttttattttggcttttggacaagaatgttttatttagtccatattcagaccaaacccatattagttcaattccttgtgctggtttaatctacagattgagtttgaaacagccacaccctttgaaattagttgactgagtgaggtgctttagtttttaggccaaggttttggcattaattttgggagaaactgtactagtttccttcaaaatcatatgaaattcctctattccaaaaatgccagttccattctcattgtggaacccattgtgcatgcattcttaatttgaccatgcaagttatctatcatatggtttctGCGTGTTTGTAATGAAGTGCTTCTGCACTTATGTTATAGATTTTAGATCCGATGACAGGTAATTAGAGTTTTTCCTCTGCTTGCTCCCCTTCTCTACAGGTAACCTTCTAAAGACAACTGCAGAAGCACTTGGCAAATGGAAGGACCTACTGCGAAATTACACCAAGTCAGTTGATGAGGAGGTATGGCTCAATAACTGAATAAATACCGTGAATACATCAGTAAGATGCGCTGAATCTTTTTAGCATAGTTATGGGCCTGTTTGGCACAACTCTAGCTCTAGCTCCACCCCTCTTGGAGCTGGAGCTCAGCCAAACAGTTTCAGCTCCACCAAAAATGGGAGTGGAGCTGGGTGGAGCTCTCTCACAAAATGAACTAGAGTTGTGGAGCTGGGTTTAGGCAGCTCCACAACTCCACTCCAGACTCAATTCCTAGAGCTAAATTTAGGAGTTGGAGCTGTGCCAAACAAGCCCATATATAGCACATTTATGTTTCCATGTCCTACCACCGGCAGGTTTAATCATTTTGAACTTGTTCCGTACTATTTTGCTGTTTAATTGTTTATTTATTCATTATATTTTTTGGCAAAATTGGTTTGGTAGCGTTGAAAGATCCCAAGTTTTGAAATATACCACTGAAaaaATTGCTGGTGCATTTAAATGCCATTCAGAGTTTACAATGTTTAGATATATACCATTTTCTGTCATGTCCAATGATCTCATGTCACAAACGTTAACTATACCTTGAATTGCTCTTGCTCCGCTGATTAGAACTTTGGTTCGAGATATTCTTCCCCAACTCATTTCCTTCTCAAGCCTTAGTGCCTTACCTAGTTCCTTCTTGTTGATTCTACTGTGTCGACACTGAAGTCGATTCATGCCGCTAACTTGATTGGTCACCGCCGATAGTCAATCCGCCGTTGCTGCCACTGGTGAAGTTGTTGATTTGGTCCCACCTGCTGCTGATCCTGTGCCAGTGACACATCTATTTCTCCTCTCCTCTACTGATCTTCTGGTGGTGATGGCCTATCGCATCACCCATTGGCTCAGCTAAGTTCTTGGTTAGCACACAGATGCAGTATACTTTTACTGCAGGCTGCCAGAGTCTGTAGCAGGCCGGAGGATGGTGCACAAGCTCCTAGTGGGGTGGTGCTGGTGGATGATAGTGCAGCAAGAGCTGGAGGGAGAAaaACTGACTGGTGAGCAGTGGCCACAGGACATCGGCCTCCCATCAGCGCCAGAGGTGACTCCCATGGTGACAACACATGGGTCACGCACAGTGTCAATAGAAAGGAAAGAGAGCATCGATCCAATCCAGGATCCATTGTTGGAGCAGTTGATTCATTTTTAGCAGTGTGTATGGTACTGTGATTCTAGTTATCCTTATTCCAAGTTTCTGTCCACATAATCCTGCTTCAAGGATCTCTCTCGCTATCTTGCAACATGAAACTAGTATTTTCCATAGTTTTTGAGGGAAGGAAAACATGTGGTCTGATCGGTTGTTTCTTTAATTTTGAAATTTCTGGCTTAATTGGGATGTTTATATTTTATAATTTCATGGGCTAAATAAATCATCCTTTTGGTGCTTCTGTAGATGGAAATATTATTGAAGTTCGAGGAAATGTGCCAAGAAAATACAAAAGAATTTTCTCCACTATTTTCAAAGGTAAACAACTTATCATTGTACTCTTGTTTTGTTGTGTTTTTTTTTTGGGTGTGTGTGGAGCACATATATCCTATTTGCTTGCACACTCCTTGTCCATTGAATGTCCTTGTGATTCTCTTTTGGTTTTGATAATACGCTATTGAACACAGATCTTGCCTTACCTCTATGATAAGGAGGTAGTAAGTGAAGACGCAATTtttgagatgggcggaggagaaagaaaatgccgatgaatctgataaggtttttgtcaaacaatctgaagctttcattcaggtatattaaatttgagttgcccttcaattttgtttgtgaacaaggtcaacagtaccaatagagtttattgagtcattgtattgctagtcttcagttaccatatcttcagctctgatctctgaggATatattgcttgagttgctctctgctggtaccaggtcttccatccaatgagaaGagtttaatttgcatcacccgaacttttactattgtatttAaatttagctcgttctgtctatgtaatactggctgattggattttcacttatcttgacgaaagtatgctaatttccctccattttatgtattcagtggcttaaggaagctgaagaggaagatgaagaagaggagtagagctggagcttatgcttgcattcctttgagctcttggagaaatgcagcatttgccttgtttgaatggtctgccggtgagtttgcaagcggcaagttttgaaaacctaattgtttgtacattagtttaatggcatttttgttcctaaccaatctggtaaaagaaaggagcaacattgcccacgaaccatgggttaaaacgactgtagagtgtagataagttaaaaccctttttcctatgtttgcttcgctgatgcttccatgaagttattttttccttctgatgaatttgtttaactgcccatctgtttctttgcacccagcacttgctcaaatcTttTAACAAAAGCTTAGTTAGATATGGCTCCTTTGGTTCTCTCATCTTTCTGCTGAGAGATGTAGTGGGGAAGAAAGCAATGGAGGGTTCTTGTCCAAAAGGCGCCAATGGATCATGTGGGTTGCGTAGATCCGGCACTAATCTTACCTCAAAAGGGGCACGGTTTGTTTAAAGTACGTTCTTTTTTCTCCCCAATCCTTTTAATTTTCTTCAGTTCCCTAAAAGCCTTCTATGCTTTGTGCAACAACTGAACAAGAGGCTGCAAAATCAAAGGTCGATATAAAAAGAGTGAAAAAAAAACAGAACGTCCTTGAGAGCCAAAAGTGGAAAAGCTTGTGAGAATGAGCAGGGCCTGCGCTAAGCAACCTCTCTGTTCGGGCTTCCTTTGGCCCTGTTCTTCGTCGCATGTGCACTTGTAATTTATCCACTTCTAATACGGGCTGGTTGGTGGTGCTGGATCGGCATTGTTTAATGTTCAGAAGATTTTACTTTGACCATAAGAAACTTCGG
More
|
||||||||||
| CDS seq | atgtcgaagaaatcacgcggcgggggcgggggcgctgccgccggcgaggatcccgaggacctctcccgctcgcccctccaagccgtcctcctcgccgacagcttcacgctcaagttccgccccatcaccctcgagcgccccaaggtgctgctgccgctggtgaatgtcccgatgatcgagtacacgctctcgtggctggaatcggcgggggtagaggagtgcttcgtcttctgctgcgcgcacgcgcagcaggtcaaggagcacctggggAaggcggggtggaccgggaagcctgcggcgagggagatgaccgtcacggctgtggaatcgcacgacgcgatcagcgcgggcgacgcgctgcgcgtcatgtacggccgtggagttatacatggagattttgttctaatcagtggtgataCcatcagcaacatgaatttgaaagacgctctccaggaacataaggatagaaggaaaaaggacccacttgctgtcatgactatggttataaagcattcaaaaccttcgatcctaacgaaccaaacacggttaggtaatgacgaaattgttatggcgatagatcctgagactaaagaactactgtattatgaggacagggcagatgtctcaaacctgtatgtgacaattgataaggacatactggccagtaatcctactctccaaTtTGCGACTGCTATATTGATATATGCTCACCAGAAGTTCTTAGTCTTTTTACGGATAACTTTGATTACCAACATCTTCGGCGCCATTTCGTTAAGGATTATGGGGTATAAAATATATACCCATGAAATACGCTCAAGTTATGctgccagaatagataattttaggagctatgatactgtgagtaaggatataattcaaaggtggacttaccctatggtgcctgatgtcctgtctttcggtgatcgtcaagaaatcaaacttcatcggcagggaatctataaggcatcagatgtaacactgtcacattctgcacaaattggtgccaattctgttGttggcaatgggacaagcgttggagaaaactgcaaggtatccaattcagttataggacaaGgctgcAatattgggaaaaatgttttgattcatggatcctatatatgggacaatgtcacaattgaagatggatgcaaagtgagtaattcactagtctgtgatggcgttcatttaggggcaggggctattgttgaacctggctgcatactgtcatttaaggttgaagttggAaagaatgttgttgttcctgcctattcAaaagtggcattgctccctcagccttcaaatgaagacagtgatgaggagcttgagtatgctgacaccaattctggagttacagatagtccacccttttccagcatgaggagtgctgaccacccaactgtatctgatgatgatgacttagaggcatcggagactggaacatgtggtgtcgttggttacgtatGggaaaatgttgatgctggaattcaggaagaatggagacaatcaaTtgctccaattcctaaagataagcttgaagagttgcagcatgctgcgtcttttgatgacgatgatgatggatcagaagatgactttAaaaatcggccaactgtactggaccaagatgatgattctgatgttagcgcggttgaggatgatgattattctaagtttgagaaagaggtggaagagactttccaaagggcgttggatggtatccatcaagataacttgatactagaaattaatgcactcaggttatcttatagccttcaacatgcagactgtgctggagctttgttccattccgttatgagaagtgcattagtggctgcacaatctactaatgGTAACCTTCTAAAGACAACTGCAGAAGCACTTGGCAAATGGAAGGACCTACTGCGAAATTACACCAAGTCAGTTGATGAGGAGATGGAAATATTATTGAAGTTCGAGGAAATGTGCCAAGAAAATACAAAAGAATTTTCTCCACTATTTTCAAAGATCTTGCCTTACCTCTATGATAAGGAGGTAACGCAATTtttgagatgggcggaggagaaagaaaatgccgatgaatctgataaggtttttgtcaaacaatctgaagctttcattcagtggcttaaggaagctgaagaggaagatgaagaagaggagtag
More
|
||||||||||
| Protein seq | MSKKSRGGGGGAAAGEDPEDLSRSPLQAVLLADSFTLKFRPITLERPKVLLPLVNVPMIEYTLSWLESAGVEECFVFCCAHAQQVKEHLGKAGWTGKPAAREMTVTAVESHDAISAGDALRVMYGRGVIHGDFVLISGDTISNMNLKDALQEHKDRRKKDPLAVMTMVIKHSKPSILTNQTRLGNDEIVMAIDPETKELLYYEDRADVSNLYVTIDKDILASNPTLQFATAILIYAHQKFLVFLRITLITNIFGAISLRIMGYKIYTHEIRSSYAARIDNFRSYDTVSKDIIQRWTYPMVPDVLSFGDRQEIKLHRQGIYKASDVTLSHSAQIGANSVVGNGTSVGENCKVSNSVIGQGCNIGKNVLIHGSYIWDNVTIEDGCKVSNSLVCDGVHLGAGAIVEPGCILSFKVEVGKNVVVPAYSKVALLPQPSNEDSDEELEYADTNSGVTDSPPFSSMRSADHPTVSDDDDLEASETGTCGVVGYVWENVDAGIQEEWRQSIAPIPKDKLEELQHAASFDDDDDGSEDDFKNRPTVLDQDDDSDVSAVEDDDYSKFEKEVEETFQRALDGIHQDNLILEINALRLSYSLQHADCAGALFHSVMRSALVAAQSTNGNLLKTTAEALGKWKDLLRNYTKSVDEEMEILLKFEEMCQENTKEFSPLFSKILPYLYDKEVTQFLRWAEEKENADESDKVFVKQSEAFIQWLKEAEEEDEEEE |
||||||||||
| Function | Translation initiation factor eIF-2B subunit epsilon [UniProtKB/Swiss-Prot:P47823] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0037770 | OsARC_02g0037770.01 | Chr02 | 34681939 | 34690917 | + | NAM | ||
| CDS seq | atgtcgaagaaatcacgcggcgggggcgggggcgctgccgccggcgaggatcccgaggacctctcccgctcgcccctccaagccgtcctcctcgccgacagcttcacgctcaagttccgccccatcaccctcgagcgccccaaggtgctgctgccgctggtgaatgtcccgatgatcgagtacacgctctcgtggctggaatcggcgggggtagaggagtgcttcgtcttctgctgcgcgcacgcgcagcaggtcaaggagcacctggggAaggcggggtggaccgggaagcctgcggcgagggagatgaccgtcacggctgtggaatcgcacgacgcgatcagcgcgggcgacgcgctgcgcgtcatgtacggccgtggagttatacatggagattttgttctaatcagtggtgataCcatcagcaacatgaatttgaaagacgctctccaggaacataaggatagaaggaaaaaggacccacttgctgtcatgactatggttataaagcattcaaaaccttcgatcctaacgaaccaaacacggttaggtaatgacgaaattgttatggcgatagatcctgagactaaagaactactgtattatgaggacagggcagatgtctcaaacctgtatgtgacaattgataaggacatactggccagtaatcctactctccaaTtTGCGACTGCTATATTGATATATGCTCACCAGAAGTTCTTAGTCTTTTTACGGATAACTTTGATTACCAACATCTTCGGCGCCATTTCGTTAAGGATTATGGGGTATAAAATATATACCCATGAAATACGCTCAAGTTATGctgccagaatagataattttaggagctatgatactgtgagtaaggatataattcaaaggtggacttaccctatggtgcctgatgtcctgtctttcggtgatcgtcaagaaatcaaacttcatcggcagggaatctataaggcatcagatgtaacactgtcacattctgcacaaattggtgccaattctgttGttggcaatgggacaagcgttggagaaaactgcaaggtatccaattcagttataggacaaGgctgcAatattgggaaaaatgttttgattcatggatcctatatatgggacaatgtcacaattgaagatggatgcaaagtgagtaattcactagtctgtgatggcgttcatttaggggcaggggctattgttgaacctggctgcatactgtcatttaaggttgaagttggAaagaatgttgttgttcctgcctattcAaaagtggcattgctccctcagccttcaaatgaagacagtgatgaggagcttgagtatgctgacaccaattctggagttacagatagtccacccttttccagcatgaggagtgctgaccacccaactgtatctgatgatgatgacttagaggcatcggagactggaacatgtggtgtcgttggttacgtatGggaaaatgttgatgctggaattcaggaagaatggagacaatcaaTtgctccaattcctaaagataagcttgaagagttgcagcatgctgcgtcttttgatgacgatgatgatggatcagaagatgactttAaaaatcggccaactgtactggaccaagatgatgattctgatgttagcgcggttgaggatgatgattattctaagtttgagaaagaggtggaagagactttccaaagggcgttggatggtatccatcaagataacttgatactagaaattaatgcactcaggttatcttatagccttcaacatgcagactgtgctggagctttgttccattccgttatgagaagtgcattagtggctgcacaatctactaatgGTAACCTTCTAAAGACAACTGCAGAAGCACTTGGCAAATGGAAGGACCTACTGCGAAATTACACCAAGTCAGTTGATGAGGAGATGGAAATATTATTGAAGTTCGAGGAAATGTGCCAAGAAAATACAAAAGAATTTTCTCCACTATTTTCAAAGATCTTGCCTTACCTCTATGATAAGGAGGTAACGCAATTtttgagatgggcggaggagaaagaaaatgccgatgaatctgataaggtttttgtcaaacaatctgaagctttcattcagtggcttaaggaagctgaagaggaagatgaagaagaggagtag
More
|
|||||||
| Protein seq | MSKKSRGGGGGAAAGEDPEDLSRSPLQAVLLADSFTLKFRPITLERPKVLLPLVNVPMIEYTLSWLESAGVEECFVFCCAHAQQVKEHLGKAGWTGKPAAREMTVTAVESHDAISAGDALRVMYGRGVIHGDFVLISGDTISNMNLKDALQEHKDRRKKDPLAVMTMVIKHSKPSILTNQTRLGNDEIVMAIDPETKELLYYEDRADVSNLYVTIDKDILASNPTLQFATAILIYAHQKFLVFLRITLITNIFGAISLRIMGYKIYTHEIRSSYAARIDNFRSYDTVSKDIIQRWTYPMVPDVLSFGDRQEIKLHRQGIYKASDVTLSHSAQIGANSVVGNGTSVGENCKVSNSVIGQGCNIGKNVLIHGSYIWDNVTIEDGCKVSNSLVCDGVHLGAGAIVEPGCILSFKVEVGKNVVVPAYSKVALLPQPSNEDSDEELEYADTNSGVTDSPPFSSMRSADHPTVSDDDDLEASETGTCGVVGYVWENVDAGIQEEWRQSIAPIPKDKLEELQHAASFDDDDDGSEDDFKNRPTVLDQDDDSDVSAVEDDDYSKFEKEVEETFQRALDGIHQDNLILEINALRLSYSLQHADCAGALFHSVMRSALVAAQSTNGNLLKTTAEALGKWKDLLRNYTKSVDEEMEILLKFEEMCQENTKEFSPLFSKILPYLYDKEVTQFLRWAEEKENADESDKVFVKQSEAFIQWLKEAEEEDEEEE
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0037770 | OsARC_02g0037770.02 | Chr02 | 34681902 | 34690356 | + | IsoSeq | ||
| CDS seq | ccacgctaccaccacacttgccgaacccacggcggcggcgacgacggcgcgagcgacccaaacctaaacctcccaacccctcctcctccgccgccgacgccgccgcagctgccatgtcgaagaaatcacgcggcgggggcgggggcgctgccgccggcgaggatcccgaggacctctcccgctcgcccctccaagccgtcctcctcgccgacagcttcacgctcaagttccgccccatcaccctcgagcgccccaaggtgctgctgccgc
More
|
|||||||
| Protein seq | PRYHHTCRTHGGGDDGASDPNLNLPTPPPPPPTPPQLPCRRNHAAGAGALPPARIPRTSPARPSKPSSSPTASRSSSAPSPSSAPRCCCR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr02 | 34689593 | 34689719 | + | OsARC_02g0037770.02 | OsARC_02g0037770.02,OsARC_02g0037770.01 | All |
| A5 | Chr02 | 34683205 | 34683371 | + | OsARC_02g0037770.02 | OsARC_02g0037770.02,OsARC_02g0037770.01 | All |
| A5 | Chr02 | 34683461 | 34683581 | + | OsARC_02g0037770.02 | OsARC_02g0037770.02,OsARC_02g0037770.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.206507 | 0.401978 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0812400 | RBH | 2.560354 | 1.639759 | 5.176321 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g56740 | RBH | 1.442105 | 1.060377 | 1.322732 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0812400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0038250 | RBH | 0.977801 | 8.630699 | 8.200319 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0038290 | RBH | 0.263519 | 1.706855 | 3.242367 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0038150 | RBH | 2.129301 | 14.968983 | 10.118017 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0037870 | RBH | 5.194673 | 21.739916 | 20.882233 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0567300 | SBH | 7.1132925 | 22.490827 | 27.8820405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0037540 | RBH | 0.311737 | 0.981135 | 1.181018 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0598400 | RBH | 9.231864 | 25.9210595 | 27.8912175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0037830 | RBH | 0.196291 | 0.217169 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0037760 | RBH | 0.500984 | 11.081458 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0037860 | RBH | 7.115447 | 12.246838 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0037860 | RBH | 1.239951 | 1.045388 | 1.542439 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0037510 | RBH | 0.450653 | 7.735478 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G038200 | RBH | 0.584913 | 3.162354 | 3.748932 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0038060 | RBH | 1.693028 | 16.537483 | 9.049263 |
