Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0029220 | OGI:02079910 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:28215625-28217116 | ||||||||
| Gene Symbol | OsPUB36 | ||||||||||
| DNA seq | GCTCAGCTTCAGCTCTGTGACTGCGACGCGAACCCATGGCCGCCATGGACGAGCCTCCTCAGCTATTCCTCTGCCCGATCTCCATGGAGCTCATGGAGGATCCGGTGACGGTGTCCACCGGCGTGACGTACGACCGCCGGAGCATCGAGGAGTGGCTCTTCGTCTACGGCCGGACCACCTGCCCGGCCACCATGCAGCCTCTCTCCAACTTCGACCTCACTCCCAACCACACTCTCAAGCGCGTCATCTCGTCGTGGCTCGATCGCGGCTCGTCGTCGTCGTCGTCTTCGTCGCCGTCGACGTCGACGCTGTCGAGCCCGATCCACGAGCTGGCGACGCCGCTGTCGCGCGCGCTGGAGCAGGAGCGGTTGCTGGCTGCGCTGGCCGAGCTGGAGGAGACGCCGTTCAAGGTGACCAAGCTGAAGAGCATGAGGGCCCGCATGGCGGGCGACGTGGCAATGCAGGGGGAGTTCGTCGCCTCGGGCGGGGTGCGCGTGGTGGGGCGCGTGATGGCGCAGGCGCTGGCGGAGAGCGGCGGCGACTTCTCGGCGTTCGCCGCGTGCGAGGAGGCTGCCGCGGTGCTCGCCGCGCTCCCGCTCTCGGACGAGGCGTCGGTGCGGGTCGTCCTTGCGCCGGAGTGCATCAGGCCCGTCATGGCGCTGCTCCAGCGCGGCGGCGCCGAGGCGAGGCTGCACGCCATGGACATCCTCACCAAGATCTCCAGCTCCGGATCAGGCGGCGACTGGACCGCCGGCGTCGACATCGACGACGTGATCAAGTCCCTCCTCGAGCTCCTCTCCGACGAGGCCTCCACGAGGCTCAGCTCGCGCGCGCTCGACGTGCTCCTCGACGTCGTGGAGCGGGCGCGGGGCGCCCGCGCCAAGGCCGTCGAGGTCGGCGCCGTGCACGTCCTCGTCGAGCTCCTCGCCGACGCCGACGACCGCCGCGTCACCGAGCGGGTACTGCTGCTGCTGAAGCGGCTGTGCAAGTGCCCCGAGGGGCGGCTCGCCTTCGCGGAGCACGACCTGTCGGTGGCGGCCGTGGCGAGGACGATGCTGCGCGTGTCGGAGCTGTCCACGCAGCTCGCCGTCAAGGTGCTGTGGCTCGTGTCCGTGGTGGCGCCGTCGGAGAAGGTCCTCGAGGACATGATGCTGACCGGCGCCGTCGCGAAGCTCCTGGGGCTGCTCCACGTCGAGAGCTCGCCGTCGACGAAGCAGAAGACGGTGAGGATGGTTAGGATCCACGGGGTAGTCTGGAGGCAGTACGCGTGCTTCCCTACCGACTTCAGGGACTACCTCAGGCTGCTCGATTGATTCTTTCTCCCCTCTCTTTCTGATTACCGTGGCTAAGCTGTAACAACAAAGCAGATGGAAATTGTGTTTTTTTTTCTGGTCCCTCGAAAAAAAGAATGTGTATTTTTTACAGAAAAAAATCGGAAATGTGTTTTCTCATCACGTACAAAAAAAAAGGGAACGTAATGCATTTCAAGTAT
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| CDS seq | ATGGCCGCCATGGACGAGCCTCCTCAGCTATTCCTCTGCCCGATCTCCATGGAGCTCATGGAGGATCCGGTGACGGTGTCCACCGGCGTGACGTACGACCGCCGGAGCATCGAGGAGTGGCTCTTCGTCTACGGCCGGACCACCTGCCCGGCCACCATGCAGCCTCTCTCCAACTTCGACCTCACTCCCAACCACACTCTCAAGCGCGTCATCTCGTCGTGGCTCGATCGCGGCTCGTCGTCGTCGTCGTCTTCGTCGCCGTCGACGTCGACGCTGTCGAGCCCGATCCACGAGCTGGCGACGCCGCTGTCGCGCGCGCTGGAGCAGGAGCGGTTGCTGGCTGCGCTGGCCGAGCTGGAGGAGACGCCGTTCAAGGTGACCAAGCTGAAGAGCATGAGGGCCCGCATGGCGGGCGACGTGGCAATGCAGGGGGAGTTCGTCGCCTCGGGCGGGGTGCGCGTGGTGGGGCGCGTGATGGCGCAGGCGCTGGCGGAGAGCGGCGGCGACTTCTCGGCGTTCGCCGCGTGCGAGGAGGCTGCCGCGGTGCTCGCCGCGCTCCCGCTCTCGGACGAGGCGTCGGTGCGGGTCGTCCTTGCGCCGGAGTGCATCAGGCCCGTCATGGCGCTGCTCCAGCGCGGCGGCGCCGAGGCGAGGCTGCACGCCATGGACATCCTCACCAAGATCTCCAGCTCCGGATCAGGCGGCGACTGGACCGCCGGCGTCGACATCGACGACGTGATCAAGTCCCTCCTCGAGCTCCTCTCCGACGAGGCCTCCACGAGGCTCAGCTCGCGCGCGCTCGACGTGCTCCTCGACGTCGTGGAGCGGGCGCGGGGCGCCCGCGCCAAGGCCGTCGAGGTCGGCGCCGTGCACGTCCTCGTCGAGCTCCTCGCCGACGCCGACGACCGCCGCGTCACCGAGCGGGTACTGCTGCTGCTGAAGCGGCTGTGCAAGTGCCCCGAGGGGCGGCTCGCCTTCGCGGAGCACGACCTGTCGGTGGCGGCCGTGGCGAGGACGATGCTGCGCGTGTCGGAGCTGTCCACGCAGCTCGCCGTCAAGGTGCTGTGGCTCGTGTCCGTGGTGGCGCCGTCGGAGAAGGTCCTCGAGGACATGATGCTGACCGGCGCCGTCGCGAAGCTCCTGGGGCTGCTCCACGTCGAGAGCTCGCCGTCGACGAAGCAGAAGACGGTGAGGATGGTTAGGATCCACGGGGTAGTCTGGAGGCAGTACGCGTGCTTCCCTACCGACTTCAGGGACTACCTCAGGCTGCTCGATTGA
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| Protein seq | MAAMDEPPQLFLCPISMELMEDPVTVSTGVTYDRRSIEEWLFVYGRTTCPATMQPLSNFDLTPNHTLKRVISSWLDRGSSSSSSSSPSTSTLSSPIHELATPLSRALEQERLLAALAELEETPFKVTKLKSMRARMAGDVAMQGEFVASGGVRVVGRVMAQALAESGGDFSAFAACEEAAAVLAALPLSDEASVRVVLAPECIRPVMALLQRGGAEARLHAMDILTKISSSGSGGDWTAGVDIDDVIKSLLELLSDEASTRLSSRALDVLLDVVERARGARAKAVEVGAVHVLVELLADADDRRVTERVLLLLKRLCKCPEGRLAFAEHDLSVAAVARTMLRVSELSTQLAVKVLWLVSVVAPSEKVLEDMMLTGAVAKLLGLLHVESSPSTKQKTVRMVRIHGVVWRQYACFPTDFRDYLRLLD |
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| Function | E3 ubiquitin-protein ligase PUB23 [UniProtKB/Swiss-Prot:Q84TG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0029220 | OsARC_02g0029220.01 | Chr02 | 28215625 | 28217116 | + | NAM | ||
| CDS seq | ATGGCCGCCATGGACGAGCCTCCTCAGCTATTCCTCTGCCCGATCTCCATGGAGCTCATGGAGGATCCGGTGACGGTGTCCACCGGCGTGACGTACGACCGCCGGAGCATCGAGGAGTGGCTCTTCGTCTACGGCCGGACCACCTGCCCGGCCACCATGCAGCCTCTCTCCAACTTCGACCTCACTCCCAACCACACTCTCAAGCGCGTCATCTCGTCGTGGCTCGATCGCGGCTCGTCGTCGTCGTCGTCTTCGTCGCCGTCGACGTCGACGCTGTCGAGCCCGATCCACGAGCTGGCGACGCCGCTGTCGCGCGCGCTGGAGCAGGAGCGGTTGCTGGCTGCGCTGGCCGAGCTGGAGGAGACGCCGTTCAAGGTGACCAAGCTGAAGAGCATGAGGGCCCGCATGGCGGGCGACGTGGCAATGCAGGGGGAGTTCGTCGCCTCGGGCGGGGTGCGCGTGGTGGGGCGCGTGATGGCGCAGGCGCTGGCGGAGAGCGGCGGCGACTTCTCGGCGTTCGCCGCGTGCGAGGAGGCTGCCGCGGTGCTCGCCGCGCTCCCGCTCTCGGACGAGGCGTCGGTGCGGGTCGTCCTTGCGCCGGAGTGCATCAGGCCCGTCATGGCGCTGCTCCAGCGCGGCGGCGCCGAGGCGAGGCTGCACGCCATGGACATCCTCACCAAGATCTCCAGCTCCGGATCAGGCGGCGACTGGACCGCCGGCGTCGACATCGACGACGTGATCAAGTCCCTCCTCGAGCTCCTCTCCGACGAGGCCTCCACGAGGCTCAGCTCGCGCGCGCTCGACGTGCTCCTCGACGTCGTGGAGCGGGCGCGGGGCGCCCGCGCCAAGGCCGTCGAGGTCGGCGCCGTGCACGTCCTCGTCGAGCTCCTCGCCGACGCCGACGACCGCCGCGTCACCGAGCGGGTACTGCTGCTGCTGAAGCGGCTGTGCAAGTGCCCCGAGGGGCGGCTCGCCTTCGCGGAGCACGACCTGTCGGTGGCGGCCGTGGCGAGGACGATGCTGCGCGTGTCGGAGCTGTCCACGCAGCTCGCCGTCAAGGTGCTGTGGCTCGTGTCCGTGGTGGCGCCGTCGGAGAAGGTCCTCGAGGACATGATGCTGACCGGCGCCGTCGCGAAGCTCCTGGGGCTGCTCCACGTCGAGAGCTCGCCGTCGACGAAGCAGAAGACGGTGAGGATGGTTAGGATCCACGGGGTAGTCTGGAGGCAGTACGCGTGCTTCCCTACCGACTTCAGGGACTACCTCAGGCTGCTCGATTGA
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| Protein seq | MAAMDEPPQLFLCPISMELMEDPVTVSTGVTYDRRSIEEWLFVYGRTTCPATMQPLSNFDLTPNHTLKRVISSWLDRGSSSSSSSSPSTSTLSSPIHELATPLSRALEQERLLAALAELEETPFKVTKLKSMRARMAGDVAMQGEFVASGGVRVVGRVMAQALAESGGDFSAFAACEEAAAVLAALPLSDEASVRVVLAPECIRPVMALLQRGGAEARLHAMDILTKISSSGSGGDWTAGVDIDDVIKSLLELLSDEASTRLSSRALDVLLDVVERARGARAKAVEVGAVHVLVELLADADDRRVTERVLLLLKRLCKCPEGRLAFAEHDLSVAAVARTMLRVSELSTQLAVKVLWLVSVVAPSEKVLEDMMLTGAVAKLLGLLHVESSPSTKQKTVRMVRIHGVVWRQYACFPTDFRDYLRLLD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.059303 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0690600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g46500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0690600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029690 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029760 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029620 | RBH | 0.0 | 1.532275 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024930 | RBH | 0.0 | 0.075624 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0029430 | RBH | 0.0 | 2.373260 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0460600 | RBH | 0.271945 | 0.2529455 | 0.02072 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0029230 | RBH | 0.151417 | 0.062753 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0488500 | RBH | 0.248012 | 0.1685215 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029540 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0029280 | RBH | 0.125361 | 2.076313 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029580 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0029430 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0029110 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029680 | RBH | 0.0 | 0.504682 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0029440 | RBH | 1.861804 | 0.0 | 0.0 |
