Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0019170 | OGI:02055330 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:19093794-19100163 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGGATAAGTATTTTTTTTAAAAAAAACAACAACATACTGGCGCAAAAATTTACAGCTTACAGAAAACCATACTGGCACAAAACTTACAACCTACAAATACCTAAACATTCTGTAAGAATGCATTTGCATCCTGGGATATGGTGATGCCTTCCTGGCTGCATCAGCATTGACCACACTTTACAAATCCAGAATATATACATTCCCCACAAAATGGAGAGCAACACCTAAGATCCTATATTCCTATGAGCACTGCAAGACGGCTACCGTGGCCGAGATCCAGGGATGGCAGAGAAGCTTCCGCTGTCAGACATGTAATAGTGGTTGTAATTGATTCTCGTAACGAGATCCGCCAGATGGGGGAAGTGACCAACATTGAGCTTGAAAGATAGGATCTGAAAAAGGATATTGAGATTGTCATGAATCTACTGAAAATACCAAGTTCAGACAACATAGGAGATCATTGAGTTTTGCTGGTAGTAGATGGAAGCATACCCGCAGGAGAAATACAACGCACTCGTCAAATTGCTTCTCGATGCGATCCACTTCCATCTCGCATCTTGCCTTGACGGCTGGAGCAGTTCCACCAGTACCAAGAGTCTGTTCTATGTTGTGGAAGTCAAGTGCCAATCCAAGAATGGTCTTAACTCGACTGGCTATGAGGGCCCACTGCACACAGGCAATGTTCATTGCCGCAATGAACACTCTTAGCTAGAATAAAGTTTTTGGAATTAAGCTTTGATGATTGTAATAAGAACGACAAGTTACTCACCAACTTATCAGAGGCCACAAAGCATTGTCGCTGAATAGAAGAGAGGTATGCTTCATGAACTTCCATGACTTCATCCAGTGTAGTGGCGGATGCCATGCCATCACAAAGCTCAGTCCACGCACTATGGTATACCTACTCAAAACTGTGTCATGAGTACAGTAGAGAGATGTACAAAGGAATGGATCGAAAATACCCAACTCACCCGATCCATGACATATTGATGAAATGCATCAACAAAATGAAGGAGCTTCTGCTCAACTATTAAATGTTGCTTAAAATTATGCATAGTGCTGCCTCCGCCCTGCCAATGGGGAAAGGTTTGATACATCAGAATGAAACTATCATATTGAGAAGTCAGAGCAAATCCAAGTACCCAACTATCAAACACTATGAGTTTATACTGTTTCCAGATTTATCAGACGACAACATGCAAAATAAATAAATAAATAGATTCCATAAGATGGTGGCAGGGTTATAGGATGGATAAGTACCTTCCACATCCACTTTCGAGTTTCGTCCAAAATAAACTTTGCACGCTTGACCTTTAGTAAGAATGCCATGACCTGATCGAGCAAAACAGCAAAAGGCCAAAAGCCATCAAATACATGGCACTGTTAAATAATTAGTCTAGAAAGTAAGTACCTGGTTATACTTCTTCAGTGCCTCCGTATTGACAATCAGATCAAGAGGCCAAGACACCTGCCACCCAACAGCATAACATGAACACATGGTAAAGAACGCAGAATATTGGTGCTGTTTTGTGCATACCTTATATGTAAAATTAAGCACATCAAGTGCCTCGATGCCAAAACCTTGTGCGCGACCTTTCCTAGAAATTGATGTAGTTTCTTCATCGTTGCGCGTATCATGCTTTGCTAACGAGACGACCAAAGAATCTGGCGCAGTCAGCAGCATTTTGTCAGCTGAGTTTCTTATGGATTCCTGCAGCCAAGAATTGATAGAGCTATTAAGATCCTTATGTGGCATCAATTTTGTCGCACTAGATTAGCATAGTGAATCACCTGTAGCAAAGTATTCAACTCAAAATCATCATCCCAGGGATTTCCTTTGTCGAGCTTGTCAAAAATTGTTACCAGAAACTGCTGCAGCATGTCACCTGAAGGCTCAAGTTGGTCAATAGAATTGTATTTATTTCTTTATTTGGTTTGAAAATAATGTTTTTCTTTGATGAAACATGTATTTAACCTAGACATAGTAAAAAGATTTTTTTCAGGGAAAATATTACGAGAGGTTAAGAACAGCTCAATGATAGGTTGATAGCATAATACCTGACCCTAGCAAATAAATAGCACGTAAAACAAAGAGTTCGTCCATTAATCTCCAGTCACCCATTAGCTTTGACAAGATTTGCTTGCCAATGTGATCAACCTGTTGAGGGGGAAAATGCAAAAACCTGTTATACGGATGACTAACAAGATATATAACGTAAATAACTAAATGCTAGTATAATGTTTGAGCAGACCTGTCTCTTTATACATTTAGAAAGGCATTCTTGGATGATACCAACTGGTTGAAGAGGATCTCTCAAACTCATGCTCTGAATAAACTTCAAAGCTCTTGAGGCAAGTGTGCTATCTTTCTGCAAAGGTAAGATCTCTGACAGCGGGACATTTTCCTGAAGGGAGAAAGGGTTAACAACTAATAAGAAAACATGAACAAGAAACTATACTTCAGAATCAGTCTCACATTTACACATGGCAGAAGAGTCGGGAATGTATAGAGAGCCTCCAAGGTTCTCCTGTCATCCTCTTGGCGGATATATTCTGAATCATCAAACTGAAAACCAAACTTGTAATCAGTTCCGTCTAGTCTGGGGAAATATGTTGTAGATAGGGTATCACCAGGGATGGTCCCTGAAGAGTCTCTATCACCAAATATAGACTTCCGTATGTTCTCATCATTCAGTGGAGGAAGATGGAAACTTTTAGAGATATTTAAGTCGCTCCAGGAGTTTTTGTTCCTCTCTAGCATTTCTTGACAAGCAGTGATGCCTGGGTTTTCATAGCAAGATAGGTTGAAATAGCTTTCTACTTCAGTGGAAGATACATCTTGATGATCTCCAGGGACAAATGTTGGATCCCTCATAACAGCATTTTTTGCTAAAGTTTTCTCCATGCCATCATAGTCCCTTCCTGATGTAGCATCTCTTAGGAGCTTTAACCAAGTCTTCTCAGAGCTGTTTTCTCCACATACCTCTTCTGTTTCTTGTACATTACTCTTACTGTGCACAATTGTTTTGTTAACTGGAGCATTATCAGCACACAACTTTCTTAAGTAATCATCAACATGGTCACCATTTTCCAACAGACCAGATAGGCATATCAAGAAACTCTCAGACAAAGTTAAGAAATCCATTTTGCAAGCATTATTTCCAAACTGGCCTGTAGATTCTTCAATAATATCTTCACGCTTATCTTGAATTCTTATACTTGAGGTATCAGGCCGAAACTTCTGTTGACTAATGTAATTGCCATGCTGATCAATATTAAACTCATGTATGACTTCACGAGTTTGAATCCGATGTGTCTCTTGAACATGCTGAACAAGCTGAAATGATTTCCCAGCAGATAAAATGGCTCTTGCAATATCTTTCAAGAACACTGGGCATAATATATCCGCGCAACCTTGATTGCTAGATTTCAAGAGAGCTGCTGCAGCAGTTGTTTCCTGGTTGATTAATTCCTTTTTCCTGATAGATTCATTGTCAGCTAATGTTGATGAGCTATCGGTTCGTGGTCCTCGTACTCTCAGCATATAACTCATTTCCCAGAATGCCGGTTGATCTATTGTAACTGCTTTGTTCGCGTAAAAGAACATCTACAGAAAACAGGTTCCCAAACCACAACAGGGAAGTTTTAAAAATGCAAATTTAAGTAACACATTTCATGATAGTTGCTCAATAAAATTAAAATTAAAGGACTTAGGCATCCCTAACAGGATTACATTAGGCATCAAGGTGATGTTTAACTACATGATCACACGCAACTCTTCAGCAGGCATTAATAAAACGGAAGGGTTTATAAGACTCACCAAACTTAAAAAATGAGCCCAACACAAAGAAACATTTCACACTCAAGAGTAATAACCTTATACTAGAAAGGATTATAGTATGCTCATAGAAGATATACAGGTCAGGATCATAATTGCATATACTTATAGGTGACTTTCAGGAGACAAATCGAATAGGATTAAGATCTCTGCCAAATGCCAATCCAACAAATAAAAAAATATTTGTGTTTATAACATAATGATATCATCATGATTTATGTTTGCACCAATGTAGCTCAGGTCGAGCAAAGGATACAGGCCATCCTTACAGTATTTCACAACTAACGTGTAGAGAAATCTTTAAATTTAAGAATATCAGTTAATAATTTCAAATGTAGCTCAAAAAATGTCTTCCTTCAATACCTCTTCATTAGGGTCATCAAGAATACCATCATAGAGCCAGGAATCAAGACACTGAAGATATGGTAACAAGGTTCCAGCGAATATCACAAGCAGCATATGATAAGGTTCACCCTGGAATTTATAGAGATTTCAAATGTAAGAGAGTTGAGCATTCTGTTAATAAACAAATAAGACCAAGTATTTGGACAACTGGTTTTTTTGTGGCAACCTCGCCATCTTCCACAAGACAGACTTCATTTAACTTCTTAAAAAGATGGTTTACAGCATGAACCGCCACTTCACTAGATGCCATCTGTGCGCCAGAATTCCAAAAGGCATCAGGCACAGCTCCTTGCACAACTTGATACAAATGTTCTGCTCCAGAACATAAACTGCATAAGATTTTATATTATGGGGTGAGTGAAAACCACAGTCTGTCAAGTGATAAAGAAGCATGAAACTGAAAACACAGGTTGTCAGTTGTACAGTCCTCTCCGGCTTTTAGAAAACTACCTAAAATGGTAAAAAGGAAAAAAAAAGACTATACTATCATGTCTCTATAATCTCATATCTCTATGCAACTTTTTTTGCCATCACACATTACATAGAGTTGCTGATATCTCTAGAATCACCTATAGTAACATACAACATCACTACTAAAAGCTAACCTAGTTATCCATTTCGTACAACAGTAAGAGGTCCTTGACTAAAGTAATGGTCACTCTGATGAAGAAAAGTAATGTTATAGTAGAATAGACCATGACCTTGACATAGAATCAGTCAATCCCAGCAGAGTTATAGTCCTTTCAACTGAAAGAAACAACTGCTCTTCCTCCTTCAGAGCTGCTTTGCGGAGCCTCTGATATTAACATAACAACAATGTAATTTCGGACAAAACAAACATCATCCCCGAAAAATCTATGCAGTCTGAATTGCAACCTCACCATTAGCCAAGAATCGACCGAACTAGCAAATGCACTCAGCGTCGGAGTTCCATGACCGCACGATCTTACCCTCCCAACAAAGAGCTCCACCTGCTTCAAGCATGTTGCAGCAAACAGAAAAGGCTTGAGCACAGCTCTGAGGCTCGTCTGTGACAGGTGCGAAACATAGATCCCTGCTTTCTCACAGTATCCCGGCGCAGTCTTGTCCCAGTAGAGCAAGACCGTGTCAAAGCCTTGGAGCACTTCGAAGACACTTTTAACCTGTAACATGTGCAACACCAATATAGTGCATATCTACACGATCATACACATAAAAGAAGCATAGCAGCAATTCCCACTAATAATGGAAGGAACAGAAGTGAAGCAGTCAGAATGAATTACCCACCAATTCATGCTCTTGTGTACTCAGTTCTGGAACAGGCGCCGCATGAGGAAGGCCATCAGAAACGCTGAGCTGCAGCTTGCGTATGAAGCTCGCAGAGCCATCGGCCTCCATCAATCCTGCGTTTAGCTGGGGAAGAACCATGGGTGGATCCCCTCTGACATTTGCATGAATGAAAAGGAGTTAATTGCGCATTGAGCCAGGTATTTTTACTATAGCTTCATTCACATTGGACTAGGTATTAGCCATCCATTTCAATTGACACCATAAATTTGCATAACTTTGCAGGTTGAATTAAAAAAAAAAAAAGCAGATTGTACCAGGGTGGGCAACATTGCACCCAAGTCCCCAAAATGGCCACCCAAAATCACAAAACATCAGTGGCGGATCCAACTTGGGACATGGGGGTTCAGTTGAACCCCCAAACTTTTGCGGGAACAAACAAACTGTTACTACTTGTATTAAGGTTAAGGCTCGCTTCTTCCAGATCTAGAACTAGAAGAGAAGGCTAGGGTTAACGAGCGCAAGCAAATTCCAGACCAAAAGTACTCCTCCGGGTGGGAGCTGAGAGATGAACCAGAAAGAGGATGTGGATGCTCACCAGGATCCCCTCCCCCTCCCCCTCCCCTGCTCTGCTCGCCAGATGGACGACTCGTCTCGGCGCGAGGGAAGCGGAGGAGACGACGAGACGGGAGATCTCTCTCTCTCTTACGCCAAGGAGAAGGAAGGGGAAGATACTCGAGTACTTCACCTTTTACTAGTATATCTCATTTCCTGCTTTGCTTTGCTCGCGATATGGAGATCGGCGACCCGCGCGGGCAGCGGGCGGCGGGAGGGCGGGAGAAAGAACTCGCGAGGAGCCGA
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| CDS seq | ATGCCACATAAGGATCTTAATAGCTCTATCAATTCTTGGCTGCAGGAATCCATAAGAAACTCAGCTGACAAAATGCTGCTGACTGCGCCAGATTCTTTGGTCGTCTCGTTAGCAAAGCATGATACGCGCAACGATGAAGAAACTACATCAATTTCTAGGAAAGGTCGCGCACAAGGTTTTGGCATCGAGGCACTTGATGTGCTTAATTTTACATATAAGGTGTCTTGGCCTCTTGATCTGATTGTCAATACGGAGGCACTGAAGAAGTATAACCAGGTCATGGCATTCTTACTAAAGGTCAAGCGTGCAAAGTTTATTTTGGACGAAACTCGAAAGTGGATGTGGAAGGGCGGAGGCAGCACTATGCATAATTTTAAGCAACATTTAATAGTTGAGCAGAAGCTCCTTCATTTTGTTGATGCATTTCATCAATATGTCATGGATCGGGTATACCATAGTGCGTGGACTGAGCTTTGTGATGGCATGGCATCCGCCACTACACTGGATGAAGTCATGGAAGTTCATGAAGCATACCTCTCTTCTATTCAGCGACAATGCTTTGTGGCCTCTGATAAGTTGTGGGCCCTCATAGCCAGTCGAGTTAAGACCATTCTTGGATTGGCACTTGACTTCCACAACATAGAACAGACTCTTGGTACTGGTGGAACTGCTCCAGCCGTCAAGGCAAGATGCGAGATGGAAGTGGATCGCATCGAGAAGCAATTTGACGAGTGCGTTGTATTTCTCCTGCGGATCCTATCTTTCAAGCTCAATGTTGGTCACTTCCCCCATCTGGCGGATCTCGTTACGAGAATCAATTACAACCACTATTACATGTCTGACAGCGGAAGCTTCTCTGCCATCCCTGGATCTCGGCCACGGTAG
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| Protein seq | MPHKDLNSSINSWLQESIRNSADKMLLTAPDSLVVSLAKHDTRNDEETTSISRKGRAQGFGIEALDVLNFTYKVSWPLDLIVNTEALKKYNQVMAFLLKVKRAKFILDETRKWMWKGGGSTMHNFKQHLIVEQKLLHFVDAFHQYVMDRVYHSAWTELCDGMASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNIEQTLGTGGTAPAVKARCEMEVDRIEKQFDECVVFLLRILSFKLNVGHFPHLADLVTRINYNHYYMSDSGSFSAIPGSRPR |
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| Function | Gamma-tubulin complex component 5 [UniProtKB/Swiss-Prot:Q96RT8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0019170 | OsARC_02g0019170.01 | Chr02 | 19093794 | 19100163 | - | NAM | ||
| CDS seq | ATGCCACATAAGGATCTTAATAGCTCTATCAATTCTTGGCTGCAGGAATCCATAAGAAACTCAGCTGACAAAATGCTGCTGACTGCGCCAGATTCTTTGGTCGTCTCGTTAGCAAAGCATGATACGCGCAACGATGAAGAAACTACATCAATTTCTAGGAAAGGTCGCGCACAAGGTTTTGGCATCGAGGCACTTGATGTGCTTAATTTTACATATAAGGTGTCTTGGCCTCTTGATCTGATTGTCAATACGGAGGCACTGAAGAAGTATAACCAGGTCATGGCATTCTTACTAAAGGTCAAGCGTGCAAAGTTTATTTTGGACGAAACTCGAAAGTGGATGTGGAAGGGCGGAGGCAGCACTATGCATAATTTTAAGCAACATTTAATAGTTGAGCAGAAGCTCCTTCATTTTGTTGATGCATTTCATCAATATGTCATGGATCGGGTATACCATAGTGCGTGGACTGAGCTTTGTGATGGCATGGCATCCGCCACTACACTGGATGAAGTCATGGAAGTTCATGAAGCATACCTCTCTTCTATTCAGCGACAATGCTTTGTGGCCTCTGATAAGTTGTGGGCCCTCATAGCCAGTCGAGTTAAGACCATTCTTGGATTGGCACTTGACTTCCACAACATAGAACAGACTCTTGGTACTGGTGGAACTGCTCCAGCCGTCAAGGCAAGATGCGAGATGGAAGTGGATCGCATCGAGAAGCAATTTGACGAGTGCGTTGTATTTCTCCTGCGGATCCTATCTTTCAAGCTCAATGTTGGTCACTTCCCCCATCTGGCGGATCTCGTTACGAGAATCAATTACAACCACTATTACATGTCTGACAGCGGAAGCTTCTCTGCCATCCCTGGATCTCGGCCACGGTAG
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| Protein seq | MPHKDLNSSINSWLQESIRNSADKMLLTAPDSLVVSLAKHDTRNDEETTSISRKGRAQGFGIEALDVLNFTYKVSWPLDLIVNTEALKKYNQVMAFLLKVKRAKFILDETRKWMWKGGGSTMHNFKQHLIVEQKLLHFVDAFHQYVMDRVYHSAWTELCDGMASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNIEQTLGTGGTAPAVKARCEMEVDRIEKQFDECVVFLLRILSFKLNVGHFPHLADLVTRINYNHYYMSDSGSFSAIPGSRPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.395305 | 0.265813 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0523300 | RBH | 2.058549 | 0.706068 | 4.505950 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g32340 | RBH | 1.368224 | 0.464889 | 1.135494 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0523300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0019340 | RBH | 1.136567 | 10.280367 | 9.731091 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0019450 | RBH | 0.316833 | 3.080896 | 4.445689 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0020510 | SBH | 0.000000 | 3.980874 | 5.770140 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0019830 | RBH | 0.0 | 0.126194 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0019130 | RBH | 6.779575 | 13.679086 | 23.556519 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0316700 | RBH | 9.065911 | 20.9745245 | 30.324749 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019280 | SBH | 0.0 | 0.116258 | 0.697218 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0336500 | SBH | 33.9237365 | 64.1799505 | 58.400566 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0019530 | SBH | 0.020103 | 0.088456 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019670 | SBH | 0.000000 | 7.803427 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0019240 | RBH | 3.137330 | 2.140911 | 2.260909 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019900 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G019460 | RBH | 0.908665 | 4.881951 | 7.855143 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0019170 | RBH | 1.263171 | 23.750898 | 11.961915 |
