Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0017920 | OGI:02051610 | 11/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:17770067-17772243 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAACATCAAAGTAAAAGTCATGAGATTATGAGACTCGGTCAATTCAGCAACAGATGAATTACTCAGTCTTGATATGATCCTAATGGATGAACATGTTTTTTTCTTTTACTTACCTAAACCATCAATCAAGTTTATCTTCCACAAATAATAATTGATTTTTTTATCCACAGGGAGATGTAATTCATGCATCTATATGGAAGAATCTAGATCAATGAAAGCTCAGTCTAGTAACTTCAAAGTTCAAGAATCCCAAAAATATCGTCCAGTTTCCAATGACCTTAAAATCACTTTCATGTATAACACAAAGGTCAAACGAAGTCAAAGAATCAGCTGAAAGTTTTCCGGAGTACTACTTTAATTTTGCTAGCATTGACACATTACAAGACCGTGCAAATAAAGACCAACATTTATCAGGTAAAATCTATTGCCTTTTATCTTTATTTTAAAATATGATATTTTTATTAGTTGATTTTCAATCCTTCAAATGTTGCAGACGTCATTGGACTACTAAACCAATTGAAACAAGGATGACAAGGAAAAACACCCCTAACCCACGACTTGCAGAAATTCGTGAGATTGAACTTCTATTATTAGGGTATAAATATTCTTATGGCCAATATTTCTTTAACTATTACAAACTATTTTCATGCTATTGAAAATTTATAATATTTATGTCAATTGAAATTTTCAGGGGGATAAGATCAGACTAACATTGTGGGGGCAATTGGCTCGATTTTTTAGCGAAGATATAATAGGCAACCAAACAGTTATTGTTGTTACATCAACAACAGTGAAAGAATATATAGGTAATAACACAAACTATGGAAATCATATTGTTCTTTTTATTTATATAATAAACTAACTAATAATCATGATTATATAGGTTTCTCTCTAAGGTCAAGCAGTGCCACGAGAATATATACAAATCTACACATACGTGAGACATGGACACTTATTGACAGGTATATGTTATTTTAATACTGATTTTTTAGTAACATAATAGAAATCCTTCTTTGATTCAAATATCTATGCCTTATAGACAATCCTCCAAAGAAACAGTACCAAAAATGATGGAAGTAGATAAGAGCACACAAAGAACAAGGGAGGAACAAATGTTCTACAACAGAAAAACACTTAAGGATATAACAGAAATGCGTCATGGTAACCTAGGAAGTCAGGTAATGGCAACATCAAACTCTCCTACAACTTTCCTACATAATTTTTATCTTCATACTCTGTTATTGGGCAATTACATACATATCCTTAAAAAACTTTCATAAATTGTAGGAATTTGTGTTTACATCAAAAGATACGATTGATCGAGTACAAGAAAACATTCAATGGTGGTACATGTCGTGCAATCTTTGTAATAAAATAGTTATTCAGAAAAACGACAAATACCATTGCAGGAATTGCAATAAATATTCAGAAAATACAACACCTAGGTAAGAGTACTTAATTTTTTGTAAATATCAATACTTATGTAATAATTTTTTTTTGCATTAACCATAATTCTATATTAGGTACCGACTACGACTCCAAATAAGTGATCATACGACATCTACAAGCTGCACTATATTTGATGATGTGGCACAAACCATGCTGGAGACACCTGTCTCATCATTACTCAATTTACTAGATGGCAAATCCGACGAAATTCCTAATGTTATTCAACAACTCTGTGGAAAACAACTCATCTTCAAGTTCAAGCTCAGTGAACAAAATTTGACTGAAGGCACACCAAACTATGTTGTCAAAAGGACATTTGTGCCTGATTATATGCTTGAGAAGCAATACCTCATTAATAAAACTGAAGAGGTAAAGCAGGCTACTACTGATTTTTTACACACAAAATCTTCAAAATTTTATTTCTGAAATATTTTCACATTATGATTTTACAGGAGTTAATGGACGACGAAGTGGATAATATACTAAAACAAGATAGAGAAACAGATCAACAGGTATTTGAACATATAATACACATATTCATTTATTTATAATATATAGCACATATGACAAATACTTTATTGCCTTTGCAGGAACAAACCAGAAGCAGCCCTCTTATTAAAAGCAAATCCATCTCACTGCTACCAGTAAAGGAAGAGCTAGAGGATAGTGACCAGGAAATCACGAGTGAAGATGAACTCACTTCGTCAGACAAACCTCCCAGTTGA
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| CDS seq | ATGGAACATCAAAGTCAAACGAAGTCAAAGAATCAGCTGAAAGTTTTCCGGAGTACTACTTTAATTTTGCTAGCATTGACACATTACAAGACCGTGCAAATAAAGACCAACATTTATCAGGGGGATAAGATCAGACTAACATTGTGGGGGCAATTGGCTCGATTTTTTAGCGAAGATATAATAGGCAACCAAACAGTTATTGTTGTTACATCAACAACAGTGAAAGAATATATAGGTTTCTCTCTAAGGTCAAGCAGTGCCACGAGAATATATACAAATCTACACATACGTGAGACATGGACACTTATTGACAGACAATCCTCCAAAGAAACAGTACCAAAAATGATGGAAGTAGATAAGAGCACACAAAGAACAAGGGAGGAACAAATGTTCTACAACAGAAAAACACTTAAGGATATAACAGAAATGCGTCATGGTAACCTAGGAAGTCAGGAATTTGTGTTTACATCAAAAGATACGATTGATCGAGTACAAGAAAACATTCAATGGTGGTACCGACTACGACTCCAAATAAGTGATCATACGACATCTACAAGCTGCACTATATTTGATGATGTGGCACAAACCATGCTGGAGACACCTGTCTCATCATTACTCAATTTACTAGATGGCAAATCCGACGAAATTCCTAATGTTATTCAACAACTCTGTGGAAAACAACTCATCTTCAAGTTCAAGCTCAGTGAACAAAATTTGACTGAAGGCACACCAAACTATGTTGTCAAAAGGACATTTGTGCCTGATTATATGCTTGAGAAGCAATACCTCATTAATAAAACTGAAGAGGAGTTAATGGACGACGAAGTGGATAATATACTAAAACAAGATAGAGAAACAGATCAACAGGAACAAACCAGAAGCAGCCCTCTTATTAAAAGCAAATCCATCTCACTGCTACCAGTAAAGGAAGAGCTAGAGGATAGTGACCAGGAAATCACGAGTGAAGATGAACTCACTTCGTCAGACAAACCTCCCAGTTGA
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| Protein seq | MEHQSQTKSKNQLKVFRSTTLILLALTHYKTVQIKTNIYQGDKIRLTLWGQLARFFSEDIIGNQTVIVVTSTTVKEYIGFSLRSSSATRIYTNLHIRETWTLIDRQSSKETVPKMMEVDKSTQRTREEQMFYNRKTLKDITEMRHGNLGSQEFVFTSKDTIDRVQENIQWWYRLRLQISDHTTSTSCTIFDDVAQTMLETPVSSLLNLLDGKSDEIPNVIQQLCGKQLIFKFKLSEQNLTEGTPNYVVKRTFVPDYMLEKQYLINKTEEELMDDEVDNILKQDRETDQQEQTRSSPLIKSKSISLLPVKEELEDSDQEITSEDELTSSDKPPS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0017920 | OsARC_02g0017920.01 | Chr02 | 17770067 | 17772243 | + | NAM | ||
| CDS seq | ATGGAACATCAAAGTCAAACGAAGTCAAAGAATCAGCTGAAAGTTTTCCGGAGTACTACTTTAATTTTGCTAGCATTGACACATTACAAGACCGTGCAAATAAAGACCAACATTTATCAGGGGGATAAGATCAGACTAACATTGTGGGGGCAATTGGCTCGATTTTTTAGCGAAGATATAATAGGCAACCAAACAGTTATTGTTGTTACATCAACAACAGTGAAAGAATATATAGGTTTCTCTCTAAGGTCAAGCAGTGCCACGAGAATATATACAAATCTACACATACGTGAGACATGGACACTTATTGACAGACAATCCTCCAAAGAAACAGTACCAAAAATGATGGAAGTAGATAAGAGCACACAAAGAACAAGGGAGGAACAAATGTTCTACAACAGAAAAACACTTAAGGATATAACAGAAATGCGTCATGGTAACCTAGGAAGTCAGGAATTTGTGTTTACATCAAAAGATACGATTGATCGAGTACAAGAAAACATTCAATGGTGGTACCGACTACGACTCCAAATAAGTGATCATACGACATCTACAAGCTGCACTATATTTGATGATGTGGCACAAACCATGCTGGAGACACCTGTCTCATCATTACTCAATTTACTAGATGGCAAATCCGACGAAATTCCTAATGTTATTCAACAACTCTGTGGAAAACAACTCATCTTCAAGTTCAAGCTCAGTGAACAAAATTTGACTGAAGGCACACCAAACTATGTTGTCAAAAGGACATTTGTGCCTGATTATATGCTTGAGAAGCAATACCTCATTAATAAAACTGAAGAGGAGTTAATGGACGACGAAGTGGATAATATACTAAAACAAGATAGAGAAACAGATCAACAGGAACAAACCAGAAGCAGCCCTCTTATTAAAAGCAAATCCATCTCACTGCTACCAGTAAAGGAAGAGCTAGAGGATAGTGACCAGGAAATCACGAGTGAAGATGAACTCACTTCGTCAGACAAACCTCCCAGTTGA
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| Protein seq | MEHQSQTKSKNQLKVFRSTTLILLALTHYKTVQIKTNIYQGDKIRLTLWGQLARFFSEDIIGNQTVIVVTSTTVKEYIGFSLRSSSATRIYTNLHIRETWTLIDRQSSKETVPKMMEVDKSTQRTREEQMFYNRKTLKDITEMRHGNLGSQEFVFTSKDTIDRVQENIQWWYRLRLQISDHTTSTSCTIFDDVAQTMLETPVSSLLNLLDGKSDEIPNVIQQLCGKQLIFKFKLSEQNLTEGTPNYVVKRTFVPDYMLEKQYLINKTEEELMDDEVDNILKQDRETDQQEQTRSSPLIKSKSISLLPVKEELEDSDQEITSEDELTSSDKPPS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.044439 | 0.067279 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017940 | RBH | 4.407123 | 9.596806 | 5.660997 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0017640 | RBH | 0.156129 | 0.172244 | 0.686653 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0313400 | RBH | 1.4137045 | 1.5801755 | 4.6286405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0018150 | RBH | 0.148110 | 0.068408 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017860 | RBH | 0.418120 | 3.501553 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0018280 | RBH | 1.042996 | 1.876293 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0018050 | RBH | 0.306513 | 0.013404 | 0.264539 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0017770 | RBH | 0.173941 | 1.098113 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G018220 | RBH | 0.136231 | 0.000000 | 1.033127 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0017940 | RBH | 0.454447 | 1.568118 | 4.528796 |
