Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsARC_02g0013770 | OGI:02033640 | 6/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:12021669-12024947 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ctagggcagcctgctaccattaggtatcgaagggtcggaatctgatggaggagaccctgtggaaatctctctatctctgggcacccccataatcttcaattcttcaagggaaataaggccatccatcccatcaggcaactctttcaggtcatgacagtgctcaaaactcatagtctttagcctggccaaatttccaaggttcgaaggcagtgccactaatctggggcaaagtagcagacacagctcctcaagggatgcaggcatcgtcggaatatccaatagacttttgcagtctttgatgtgaaacttctctagatagtagagtggcatgatttcctccgatgatgaaccctttccttcaaggttatcacagtgttcaatagacagggatcgaaggtgaatcaagctcatgagctcctccattggccaatgcacaaggtcgttgcatgcaccaatacacaaatcctccacaaaggcaaagcatttccatagcccaagatgcattttggataaaccggatgcagctgtgaagaagttgaggccatatagcctcaaaatcctaaggttttctagtgggccttggtttgtgtcgacctccagagtggccatttggttatatgacgaactaatatgtagtttcgtgagagatggccatgagcccaacgacattctcatagactcattttcccggtaaatgagttcagacaaagtggttagatgtgcaagtaagctcattgcaagactgcaatatccatatgttttcaattcttttagaactgagcaatctggaacacttgcaagttttggacaatcagagatacatagcgttgcgagcttcggaaacgtaactaagctagtattggcctctccagcagtactttctgtccatttctccaagttcgataactggcttagtgtcatatcctttaaccttgggaaaatttgtagagggatgtagtatccttcggctttcacaccaacgacattcataaacaatgtggttagattctccattttagataaagacatacactcaatcgagaccaaaaaccacacagtcgatagatccttacatcctgaacagttggaaaagtggagagttgttaggcactgcaacatttgtgggtcttccatccattgtgggatctttaggccactatatccgtgtagttccaaaaTtttgagcttagcatgaggtttaagcgactccaacacttcttcctcgttgcatcccttgttttcaggcatgcaaaatttggtttaaagaagatgacgaaccggtttaaagaagatgacggcgtcgtcggcatagagcgaattatttggtgctctgctccactggttaactttgtcaagcaacccggctgacattgctttctgcaacatagcatgaagagtatccatcaccaggacaaaaagaagaggagataacggatccccttgtcttagccccctcataggcttgaaggggtcacttaaagtgccattgatgtcaatccttgtttctgcagttaggagaagagccgacacccaacctctccatctcctcccaaaacctctgtgTtttaacatatccaaaaggaagctccatgaaactgaatcaaaggccttcgagatgtcaagtttaaggagaaccattgctttcctctgtcgatgaaattatcttgtcagcccttgaacgaaaatgaagttctcatggatagattggcctttgatgaacgatgtctgagtgcgagagaccagctcacccattctcggagtgagcctcagagcgatgaccttcgttgccaatttggcaaagccgtgaatgaggctaataggtctataatccttcaaaagggtagaggcctccttctttggcagcaacgtaataatcgctatgttcagcatttccaaattctgagagttggctgagcaaaatttcagcaacgcagccatcacgtccgatttaatgatggctatgttcagcatttccctttatgtttagcataaaggcatgcaaaatttactactaccccaagaaagtactagttcacttagatcttgcttcagatggagattggcatcttttccatttttcctgctatttatttttctcaaattgtacaattccaacctattggcaaggtgattcaagtctttgagctcctcaattccatggccaggttcagtgtccaaaataaatgttgttagagtgcgaagatttttcagtgtccaaaataaatgttgttagagtgcgaagatttttcagtaggctaatatttggtggcatccgcttcaatggacagctaaaaagataaagatggatgagcttgctcattgttctcataccttccagtaaatatctcagttttttgcaacggttcagccttagtgtttgtaagttatacatcgtgcatattgaacttggcagcacatccatgtcagacccagaaaggtcaagatatcgtagatgctttggattgatgacctggctatgaaaagagcaatcatgcatacggacagtacccaaagctcttaatgacatcagtcttaagtcagtaccaatatctcttaatgacatctgtcttaagttattaatatgtactggtaaccacagagttatcaaagtgcggagacaagatgatgttttgagcaatcccactgtttgactcattgctgatatgcaacgtccggtatatgcttcctgtgggattaactgttctgaaattacactatcatctgccacatcttttactaaatcatgcatcaaatcatgcattttgcaaacggaaaaaaaaacctttcctgtttcacgtcttggaggaaggatctccaaaccaaattacggaaaacatattCccccttttgttccaaacccattgtttcgtcttcctgaatgaaaccatttgccatccacaattggatcaacacttctttgtccatctcatggtcctttgggaaaactgaacaaaaggcaaagcattgcttcatttcaggtggtaggtgtctgtagctcaattttagtacaggtagtatatcatcttcacccctgtcattgtccccagtattgcttcttgcaattgtttcccattccttgacttgttgctttgaactcatcatatcacccattgtcttcaaagcaagaggaagccccttacatttcttgacaataagtttgccagcggtgaccaattcaacttgctgttgtacgcctttattgaatgctttctttgagaatagttcccatgaatcatcgtcactcagacaagctaggttatgggattctagggtgcccat
More
|
||||||||||
CDS seq | atgggcaccctagaatcccataacctagcttgtctgagtgacgatgattcatgggaactattctcaaagaaagcattcaataaaggcgtacaacagcaagttgaattggtcaccgctggcaaacttattgtcaagaaatgtaaggggcttcctcttgctttgaagacaatgggtgatatgatgagttcaaagcaacaagtcaaggaatgggaaacaattgcaagaagcaatactggggacaatgacaggggtgaagatgatatactacctgtactaaaattgagctacagacacctaccacctgaaatgaagcaatgctttgccttttgttcagttttcccaaaggaccatgagatggacaaagaagtgttgatccaattgtggatggcaaatggtttcattcaggaagacgaaacaatgggtttggaacaaaaggggGaatatgttttccgtaatttggtttggagatccttcctccaagacgtgaaacaggaaagccaggtcatcaatccaaagcatctacgatatcttgacctttctgggtctgacatggatgtgctgccaagttcaatatgcacgatgtataacttacaaacactaaggctgaaccgttgcaaaaaactgagatatttactggaaggatgtaaggatctatcgactgtgtggtttttggtctcgattgagtgtatgtctttatctaaaatggagaatctaaccacattgtttatgaatgtcgttggtgtgaaagccgaaggatactacatccctctacaaattttcccaaggttaaaggatatgacactaagccagttatcgaacttggagaaatggacagaaagtactgctggagaggccaatactagcttagttacgtttccgaagctcgcaacgctatgtatctctgattgtccaaaacttgcaagtgttccagattgctcagttctaaaagaattgaaaacatatggatattgcagtcttgcaatgagcttacttgcacatctaaccactttgtctgaactcatttaccgggaaaatgagtctatgagaatgtcgttgggctcatggccatctctcacgaaactacatattagttcgtcatataaccaaatggccactctggaggtcgacacaaaccaaggcccactagaaaaccttaggattttgaggctatatggcctcaacttcttcacagctgcatccggtttatccaaaatgcatcttgggctatggaaatgctttgcctttgtggaggatttgtgtattggtgcatgcaacgaccttgtgcattggccaatggaggagctcatgagcttgattcaccttcgatccctgtctattgaacactgtgataaccttgaaggaaagggttcatcatcggaggaaatcatgccactctactatctagagaagtttcacatcaaagactgcaaaagtctattggatattccgacgatgcctgcatcccttgaggagctgtgtctgctactttgccccagattagtggcactgccttcgaaccttggaaatttggccaggctaaagactatgagttttgagcactgtcatgacctgaaagagttgcctgatgggatggatggccttatttcccttgaagaattgaagattatgggggtgcccagagatagagagatttccacagggtctcctccatcagattccgacccttcgatacctaatggtagcaggctgccctag
More
|
||||||||||
Protein seq | MGTLESHNLACLSDDDSWELFSKKAFNKGVQQQVELVTAGKLIVKKCKGLPLALKTMGDMMSSKQQVKEWETIARSNTGDNDRGEDDILPVLKLSYRHLPPEMKQCFAFCSVFPKDHEMDKEVLIQLWMANGFIQEDETMGLEQKGEYVFRNLVWRSFLQDVKQESQVINPKHLRYLDLSGSDMDVLPSSICTMYNLQTLRLNRCKKLRYLLEGCKDLSTVWFLVSIECMSLSKMENLTTLFMNVVGVKAEGYYIPLQIFPRLKDMTLSQLSNLEKWTESTAGEANTSLVTFPKLATLCISDCPKLASVPDCSVLKELKTYGYCSLAMSLLAHLTTLSELIYRENESMRMSLGSWPSLTKLHISSSYNQMATLEVDTNQGPLENLRILRLYGLNFFTAASGLSKMHLGLWKCFAFVEDLCIGACNDLVHWPMEELMSLIHLRSLSIEHCDNLEGKGSSSEEIMPLYYLEKFHIKDCKSLLDIPTMPASLEELCLLLCPRLVALPSNLGNLARLKTMSFEHCHDLKELPDGMDGLISLEELKIMGVPRDREISTGSPPSDSDPSIPNGSRLP |
||||||||||
Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsARC_02g0013770 | OsARC_02g0013770.01 | Chr02 | 12021669 | 12024947 | - | NAM | ||
CDS seq | atgggcaccctagaatcccataacctagcttgtctgagtgacgatgattcatgggaactattctcaaagaaagcattcaataaaggcgtacaacagcaagttgaattggtcaccgctggcaaacttattgtcaagaaatgtaaggggcttcctcttgctttgaagacaatgggtgatatgatgagttcaaagcaacaagtcaaggaatgggaaacaattgcaagaagcaatactggggacaatgacaggggtgaagatgatatactacctgtactaaaattgagctacagacacctaccacctgaaatgaagcaatgctttgccttttgttcagttttcccaaaggaccatgagatggacaaagaagtgttgatccaattgtggatggcaaatggtttcattcaggaagacgaaacaatgggtttggaacaaaaggggGaatatgttttccgtaatttggtttggagatccttcctccaagacgtgaaacaggaaagccaggtcatcaatccaaagcatctacgatatcttgacctttctgggtctgacatggatgtgctgccaagttcaatatgcacgatgtataacttacaaacactaaggctgaaccgttgcaaaaaactgagatatttactggaaggatgtaaggatctatcgactgtgtggtttttggtctcgattgagtgtatgtctttatctaaaatggagaatctaaccacattgtttatgaatgtcgttggtgtgaaagccgaaggatactacatccctctacaaattttcccaaggttaaaggatatgacactaagccagttatcgaacttggagaaatggacagaaagtactgctggagaggccaatactagcttagttacgtttccgaagctcgcaacgctatgtatctctgattgtccaaaacttgcaagtgttccagattgctcagttctaaaagaattgaaaacatatggatattgcagtcttgcaatgagcttacttgcacatctaaccactttgtctgaactcatttaccgggaaaatgagtctatgagaatgtcgttgggctcatggccatctctcacgaaactacatattagttcgtcatataaccaaatggccactctggaggtcgacacaaaccaaggcccactagaaaaccttaggattttgaggctatatggcctcaacttcttcacagctgcatccggtttatccaaaatgcatcttgggctatggaaatgctttgcctttgtggaggatttgtgtattggtgcatgcaacgaccttgtgcattggccaatggaggagctcatgagcttgattcaccttcgatccctgtctattgaacactgtgataaccttgaaggaaagggttcatcatcggaggaaatcatgccactctactatctagagaagtttcacatcaaagactgcaaaagtctattggatattccgacgatgcctgcatcccttgaggagctgtgtctgctactttgccccagattagtggcactgccttcgaaccttggaaatttggccaggctaaagactatgagttttgagcactgtcatgacctgaaagagttgcctgatgggatggatggccttatttcccttgaagaattgaagattatgggggtgcccagagatagagagatttccacagggtctcctccatcagattccgacccttcgatacctaatggtagcaggctgccctag
More
|
|||||||
Protein seq | MGTLESHNLACLSDDDSWELFSKKAFNKGVQQQVELVTAGKLIVKKCKGLPLALKTMGDMMSSKQQVKEWETIARSNTGDNDRGEDDILPVLKLSYRHLPPEMKQCFAFCSVFPKDHEMDKEVLIQLWMANGFIQEDETMGLEQKGEYVFRNLVWRSFLQDVKQESQVINPKHLRYLDLSGSDMDVLPSSICTMYNLQTLRLNRCKKLRYLLEGCKDLSTVWFLVSIECMSLSKMENLTTLFMNVVGVKAEGYYIPLQIFPRLKDMTLSQLSNLEKWTESTAGEANTSLVTFPKLATLCISDCPKLASVPDCSVLKELKTYGYCSLAMSLLAHLTTLSELIYRENESMRMSLGSWPSLTKLHISSSYNQMATLEVDTNQGPLENLRILRLYGLNFFTAASGLSKMHLGLWKCFAFVEDLCIGACNDLVHWPMEELMSLIHLRSLSIEHCDNLEGKGSSSEEIMPLYYLEKFHIKDCKSLLDIPTMPASLEELCLLLCPRLVALPSNLGNLARLKTMSFEHCHDLKELPDGMDGLISLEELKIMGVPRDREISTGSPPSDSDPSIPNGSRLP
More
|
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0307400 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g20460 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os02g0307400 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0013880 | RBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0014060 | RBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0013880 | RBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0013720 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0013730 | RBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0191300 | RBH | 0.013778 | 0 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0013550 | RBH | 0.0 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0203500 | RBH | 0 | 0 | 0 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0014090 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0013630 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0014180 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0013990 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0013800 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G014100 | RBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0013860 | RBH | 0.0 | 0.0 | 0.0 |