Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0013450 | OGI:02032750 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:11678867-11683561 | ||||||||
| Gene Symbol | NAAT2, OsNAAT2 | ||||||||||
| DNA seq | accttcgaaacgaacaaatttggataaaccgctcgaagagcggcatccgatcgagctaacaatggagggtgtcggtggcggcaagcgccgcggggacgacggggcggaggccacgccgcggtggcgcttctcccggccgtcgtcgcagggcgggcccctggcggccgccggcctcacgagcatccgcgcggtgctcaaccgcgtcaactcctccgtcgacgccgccgccgccggcgggccgcgccccgtcctgcggctcggcaacggcgaccccaccgcgtccgcctgctaccgcaccgcgcccgccgccgaggacgccgtcgtcgacgcgctccgctccggggcgcacaacggctactccctaaccgtcggcgtcctctcggcgcgccggtgagctgcccccccccccccccccccttgccacactgtgctctgcttatgttctagtatgtgactgatcagaaaaacagatttgaatatttttatgggcaacattttgcatacttggattttttttagtattttcaacaaatttaactgcataaagtatgtgtagtttgatgttttagctcttttgttagaaaactctttgatgttttagcttatgttatttggttcctgttttcttctctctttaattattttgtggttctagtttgaattcttttttccatggaagatatgtttggtactcctcattcacatactggttgcacgacgaagttgtaattacatatttttttcacctcttgtttccggtaagaagaaaaaaatagaaaaggaaacagttcttcaatgtttatggtgactgtcaaattaaatttatgatacatccatgatttattttggaattttcaaacccggcatcacagtgtattcaccggattccctggttcccctggcaccaaacaatttctggccgattgagcatttattttgtctggtgccttaccggtgctttcttgacttggacaaatattcgagtacatagggagatgctatttcaagaataggaaaaaaacaaaaggtacttttgacaagttgctgggataccaaacagggcctcaaaccttccaagctggaaactttgaaatttacctgcgaggtaaatttaatggagaatggttcaatatggagctggaaatttgattcctttttataataataatatttttactaaaagcaaatggaggaataggattccatttttgtcattcttatctcttttctatggatgtagatatgctttgactcctaacattttgatgaggaaagaaaggggaatttgttgatgttttgttgcactaaataactaacaaaatgtaaatcggcatgtttagagtgtggaacaatatttcagaaaatttcaaaggaaaaagaaaaggatctgcagtgttctaattgtttcttatccatatagtagtacaatttaccaacttaggaatgcatgttcatatccttctctcttattttcttgtggtgatggtcatattgttcttaactaaataaaagaattctctgtgcatttcttgtaaaaaaagtactaagtcaggcgctcatctgtaaaatattttagcttctcttacttgcaataccagttttttaaaattcctgcttgtcaatactgcatgatattttcccaaagatttcaatcttgaatggtgtgtatctctcatatttacttgtttaaactttagtgctattgcagaatacctatctcgagatcttccttatgagctttcggcaaatgatatttacctgacctccggatgtgtccaagcgatcgaagtcatgatctctgttttggctcagcccggatccaacatcttacttcccaaacccggctttccattgtatgaatcacggactacattcagcaatctagaggttcgacatttcgatctcattccagagagaggctgggaggtagacctagagggtgtgcaagctattgctgatgagaacactgttgcaattgtcgtgatcaatcccagtaacccttgtggaagcgtgtattcgtatgatcatttggcaaaagtgagtatatttcttggacaagtaaggtactgggtattttgttgtgtgatgcaatttgccatttatgtgcttttaacaaacagattgccgagaccgccaggaaacttggtttgctgataattgctgatgaggtatatgaccatttggcatttgggaataatccttttatacctattggtgtttttgggaagaccgtcccagtgatcaccttgggatctatttcaaaaagatggcttgtacctggttggcgacttggttggatagcaacatgtgatccaaatggcattttaaaggaagccaaggttaactctcgatctgtgttccaacatccaatgcatatcttgttttgatccatgactaggttcactattggttcgcgaagttgtattgtgctcgtaaatttgcctaacaaagctgcacattctgcctaagggtaaactgcagaagtgcagatgaatttgatgcctctttgattccaggctccaaaacagtttagcaaataagcacacctggctaggttttttacatttgtctagcctgataatttcttcttagaaatacttggttaatttgcgttggtagcatagaatctagaataatgtgttagtgcaccattttgcggtggctgatagtatttttgtatgctacccagatctttcccttccttttctttttagttgctgcatgtgcattcaattacattttgaaggggatattttgtcattatattcctcacaaaaaaaggataataaTTatattgcactggcaattggatttcttatctaaaatgtttcatgacaggttaaccaatcaattgagaactatattaacatctcaactgatcctgcaacgtttgttcaggtatatgtgcctttcttattttcacatccatcatttatggcaatatgatttacagacatattcctctttttctggacacaaactctctaacaagcatgcacatgcatggcaacataatttttcagaaagtgtgttacattctaatattcttattcacagggagcaatccctcaaattatagccaacacaaaagaagattacttcaacaaaattctcgatcaattaaggaatgcagcggatttatgttatgataaaataaaggacatcaagggcattacatgtccacacaagccagagggatcaatgtttgtgatggtaagaaaaagtacaggctaacatgctctggatgaactggctcagttttgtatcctaatctcaatcatcatctaattcatgtctatcctttatttttcaggtaaaattggatctctcttacttggatggcttccatgatgatatggacttctgctgcaggttggcaaaagaggagtctgtgatagttttgccaggtacaaattccataaatgttcaacctcttgtatggtaaaaaaacaggacgaccattattacttccatttagcaatataaatcaaaatccactatgtgcacagaaatactgtactacagccactcaacgtgtcaacctgttttaagaattttatggatacatagtggaaatacactggaacaactacacattaatgtctgcaatggagtcatattgttagcaacaactccacaagaggaccctaatgcgaaacgaattgagcatctgattagtttcattatgcttcttccattattataacagagacatcatggtaaattgcgagacacagttgcattgttttttttttcatagcagcctttgcgtttcaaacattgtcttgaacttgattatcatatggcatgccttcctattatatctcagccattttgtcattgctttaacatatagtgtaagtatactaaacaatgttagttagaatgcaatttcaccattcaccaatttcctaatgataatgtgtagtacactagtaggtatattctacaaccttacatggaaaggcaacacaaataaaggttaagaaacttgcaagaattaggctaacatttacctctgttgtatttatttgtactgaactttatttctcttaatgcaacgatacacaaaccttttgcgtattaccgaaaataaaggttaagataagacacagcgtgaaaaggagtttaatttgtccagatggcacgccttttcttgttcttggctactcaattctgccccaatgcacatgagtatttctcaggagaaaaaaaaatattttacagggagtgcattaggattgaagaattgggttcgcatcactttcgccatcgatataccatctcttgtggatgcctttgaaaggataaaatctttctgccagaggcatggcaaactggaaacctaagcacaaaggtgttgagatatttcattattgtggtgcatcggcaactacgcgttggggcacccaaatgttgttcttaataatctgttgctgtgaccaagatgatcatttaccttgtcaaacatgtatatcgtattcttccggcaggtgaactcaaacctatcttgtatttgtaatgtattaattgtcgggaaatgctgtaatctataactgtaagtcattcttggttacagttgatttgaatacgtcagcctgtatacgacacatttgtgtaggactaaatgggtgtgtgcgcatgtgcatctgatttgagcaaaccaattcaaattagttacttatgggttttttt
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| CDS seq | atggagggtgtcggtggcggcaagcgccgcggggacgacggggcggaggccacgccgcggtggcgcttctcccggccgtcgtcgcagggcgggcccctggcggccgccggcctcacgagcatccgcgcggtgctcaaccgcgtcaactcctccgtcgacgccgccgccgccggcgggccgcgccccgtcctgcggctcggcaacggcgaccccaccgcgtccgcctgctaccgcaccgcgcccgccgccgaggacgccgtcgtcgacgcgctccgctccggggcgcacaacggctactccctaaccgtcggcgtcctctcggcgcgccgtgctattgcagaatacctatctcgagatcttccttatgagctttcggcaaatgatatttacctgacctccggatgtgtccaagcgatcgaagtcatgatctctgttttggctcagcccggatccaacatcttacttcccaaacccggctttccattgtatgaatcacggactacattcagcaatctagaggttcgacatttcgatctcattccagagagaggctgggaggtagacctagagggtgtgcaagctattgctgatgagaacactgttgcaattgtcgtgatcaatcccagtaacccttgtggaagcgtgtattcgtatgatcatttggcaaaaattgccgagaccgccaggaaacttggtttgctgataattgctgatgaggtatatgaccatttggcatttgggaataatccttttatacctattggtgtttttgggaagaccgtcccagttaaccaatcaattgagaactatattaacatctcaactgatcctgcaacgtttgttcagggagcaatccctcaaattatagccaacacaaaagaagattacttcaacaaaattctcgatcaattaaggaatgcagcggatttatgttatgataaaataaaggacatcaagggcattacatgtccacacaagccagagggatcaatgtttgtgatggtaaaattggatctctcttacttggatggcttccatgatgatatggacttctgctgcaggttggcaaaagaggagtctgtgatagttttgccagggagtgcattaggattgaagaattgggttcgcatcactttcgccatcgatataccatctcttgtggatgcctttgaaaggataaaatctttctgccagaggcatggcaaactggaaacctaa
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| Protein seq | MEGVGGGKRRGDDGAEATPRWRFSRPSSQGGPLAAAGLTSIRAVLNRVNSSVDAAAAGGPRPVLRLGNGDPTASACYRTAPAAEDAVVDALRSGAHNGYSLTVGVLSARRAIAEYLSRDLPYELSANDIYLTSGCVQAIEVMISVLAQPGSNILLPKPGFPLYESRTTFSNLEVRHFDLIPERGWEVDLEGVQAIADENTVAIVVINPSNPCGSVYSYDHLAKIAETARKLGLLIIADEVYDHLAFGNNPFIPIGVFGKTVPVNQSIENYINISTDPATFVQGAIPQIIANTKEDYFNKILDQLRNAADLCYDKIKDIKGITCPHKPEGSMFVMVKLDLSYLDGFHDDMDFCCRLAKEESVIVLPGSALGLKNWVRITFAIDIPSLVDAFERIKSFCQRHGKLET |
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| Function | Nicotianamine aminotransferase 1 [UniProtKB/Swiss-Prot:A0A0P0VI36] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0013450 | OsARC_02g0013450.01 | Chr02 | 11678880 | 11683535 | + | NAM | ||
| CDS seq | atggagggtgtcggtggcggcaagcgccgcggggacgacggggcggaggccacgccgcggtggcgcttctcccggccgtcgtcgcagggcgggcccctggcggccgccggcctcacgagcatccgcgcggtgctcaaccgcgtcaactcctccgtcgacgccgccgccgccggcgggccgcgccccgtcctgcggctcggcaacggcgaccccaccgcgtccgcctgctaccgcaccgcgcccgccgccgaggacgccgtcgtcgacgcgctccgctccggggcgcacaacggctactccctaaccgtcggcgtcctctcggcgcgccgtgctattgcagaatacctatctcgagatcttccttatgagctttcggcaaatgatatttacctgacctccggatgtgtccaagcgatcgaagtcatgatctctgttttggctcagcccggatccaacatcttacttcccaaacccggctttccattgtatgaatcacggactacattcagcaatctagaggttcgacatttcgatctcattccagagagaggctgggaggtagacctagagggtgtgcaagctattgctgatgagaacactgttgcaattgtcgtgatcaatcccagtaacccttgtggaagcgtgtattcgtatgatcatttggcaaaaattgccgagaccgccaggaaacttggtttgctgataattgctgatgaggtatatgaccatttggcatttgggaataatccttttatacctattggtgtttttgggaagaccgtcccagttaaccaatcaattgagaactatattaacatctcaactgatcctgcaacgtttgttcagggagcaatccctcaaattatagccaacacaaaagaagattacttcaacaaaattctcgatcaattaaggaatgcagcggatttatgttatgataaaataaaggacatcaagggcattacatgtccacacaagccagagggatcaatgtttgtgatggtaaaattggatctctcttacttggatggcttccatgatgatatggacttctgctgcaggttggcaaaagaggagtctgtgatagttttgccagggagtgcattaggattgaagaattgggttcgcatcactttcgccatcgatataccatctcttgtggatgcctttgaaaggataaaatctttctgccagaggcatggcaaactggaaacctaa
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| Protein seq | MEGVGGGKRRGDDGAEATPRWRFSRPSSQGGPLAAAGLTSIRAVLNRVNSSVDAAAAGGPRPVLRLGNGDPTASACYRTAPAAEDAVVDALRSGAHNGYSLTVGVLSARRAIAEYLSRDLPYELSANDIYLTSGCVQAIEVMISVLAQPGSNILLPKPGFPLYESRTTFSNLEVRHFDLIPERGWEVDLEGVQAIADENTVAIVVINPSNPCGSVYSYDHLAKIAETARKLGLLIIADEVYDHLAFGNNPFIPIGVFGKTVPVNQSIENYINISTDPATFVQGAIPQIIANTKEDYFNKILDQLRNAADLCYDKIKDIKGITCPHKPEGSMFVMVKLDLSYLDGFHDDMDFCCRLAKEESVIVLPGSALGLKNWVRITFAIDIPSLVDAFERIKSFCQRHGKLET
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0013450 | OsARC_02g0013450.02 | Chr02 | 11678867 | 11683561 | + | IsoSeq | ||
| CDS seq | atggcaaactggaaacctaagcacaaaggtgttgagatatttcattattgtggtgcatcggcaactacgcgttggggcacccaaatgttgttcttaataatctgttgctgtgaccaagatgatcatttaccttgtcaaacatgtatatcgtattcttccggc |
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| Protein seq | MANWKPKHKGVEIFHYCGASATTRWGTQMLFLIICCCDQDDHLPCQTCISYSSG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr02 | 11681103 | 11681705 | + | OsARC_02g0013450.02 | OsARC_02g0013450.01,OsARC_02g0013450.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.348396 | 1.455001 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0302700 | RBH | 0.396518 | 0.394559 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g19970 | RBH | 0.272405 | 0.241397 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0302700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0013590 | RBH | 0.697799 | 47.784405 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0013770 | RBH | 0.353202 | 2.775894 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0013600 | RBH | 1.754616 | 75.317970 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0013680 | RBH | 0.065269 | 0.720273 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0013430 | RBH | 0.000000 | 71.696388 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0186100 | RBH | 5.851431 | 9.8334665 | 0.007686 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0013210 | RBH | 0.256137 | 2.991363 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0198000 | RBH | 6.276238 | 1.6306 | 0.1130275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0013770 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0013320 | RBH | 0.000000 | 8.834906 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0013840 | RBH | 0.0 | 32.796494 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0013670 | RBH | 0.297919 | 2.887434 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0013480 | RBH | 0.0 | 24.948858 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G013800 | RBH | 0.000000 | 3.867290 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0013570 | RBH | 1.070781 | 13.320120 | 0.211857 |
