Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0013250 | OGI:02032140 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:11446195-11448378 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacaccgattgtgactgcgtggcgtgagaagggcgctggacgatgcccgcgtgtgtgaggagagcccagaggtgggtaatgagctcgccgcccattgtcaggtgctcgacgtgcgccatcgcattgtccgccggggtgacgaacagcatcagctccgcccagaagtcagccaagacctcccacctcttcgcctccccgatcttcatcaggtcttctgcaagcctcactccgaggacgtggatgctgtcaggcgccgatgtgctcggcgtccgaatcgctagctttgccgtgtcctggagcttaagaactgcagcttcgttcgacgtacagccgtggaggcagcggcggagatcgagcagcactgcctcggcgatcgtctgggtggtgtattggtggtctggcaaaagatccggcgcggacgacaccaggtacgcgcagtacctcgacaaactcatcgcgatttcacggtgacgacgttgttggtcgccgccgccgccggcggctctgCTcgcgcgtgcgcgtgttttgacgtcgcagatgtaggtggcgatgtgccagatcagaatggtgtgcgcgcaggtcgcatgctttcacgccttgcctagcgacaacatctgttcgaatttgtgacccttcagtgaggcgcacccgtcgctgagaacgccaccgcttttcttcaggggagaagcgagcgcattctgcaggtcgcccgacagcttcgctgatcgggtcttaccactgttgaacatcagattgtccagccacccacgagtcacgcccgacagccagtccttgacggggtggccgagaatggcgtggcgaatgatggagtattgtctcatcttcctcgtccagtacttgccgctgccacagtagcacagcacacccagcagcacctcgatgaaagggttattctgcaacgacgacggccagagaacatacctgcacagcaccttcaccttctgccagtcggagaagagcacagcaacgaactggtaggcctccagaacaatgacaaggactatgatggccatggtgaggacgacgtcgaggttgatgtcgtaaagcatgatacttctgtggtgcgtaggatggtagtgtcgaagtgctggggagaggagggtcagcacgccgacggtcaccatgatggcgcacatggcaaggtgcggtaatgtggtcgtgacggcgtggcagacgaaagggtacctcgtgtagaacaggtcgtagaggaagccgagctccacttcgatcacctggaaagctctagtgctgccttgttctaggaggcgattgagaaccaggttcctagtcttaggcaagccggactcggccaagggaaagttgccgcacctccgccggagtagcttgaacagagcaaaagagaggcaaagatcccgtcgccgatctgagctttttagcagccatcccttgcactgccagaccctctccaccgtcaccagcttatcgttgtgatcttccttcttgatcttcttgatttagtcgggcgcctccgtcaccgtgttgtccgtctcttcccccctgactatgtacatgtaacctaccatgggatcgggattggtattggtattggtatttggatcttcggcgccgccatggctggactcggtctggttgatcatgtagtcagtaatgagctggttgtccctctgcaacccgtcggattgtagggcctgccggtagctgagtgcgctcaacgcaatcttccccaggctgaccaaccacactccaaagacgaacaacttgagcttcgcggagagcacgttggagtaatactggagcagtacggtgacgtagatgacctggaggcctcggttgagcaggatgatcccggggctcttgacgtcggcgagggagtaggcggtgatggtgtcggagctggcgaggacgaagaggaagaagcaggaccagaccaggaacagctcgtggtgcataggggtggactgcatgagaccgatggtgtaggcggcgagcgggtacgacaccgcgaaggcgccccacaggatgaaccggaccatggcgctgccgctgtagcgcctcgaggagccgaggaagacgagcaacgcgaggacgacggaacagaggagcaccagggcttcgatccgggccagctggcggagatcgcagtcgggcggtagtgccgcggtcgcattgcatacccacat
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| CDS seq | atgtgggtatgcaatgcgaccgcggcactaccgcccgactgcgatctccgccagctggcccggatcgaagccctggtgctcctctgttccgtcgtcctcgcgttgctcgtcttcctcggctcctcgaggcgctacagcggcagcgccatggtccggttcatcctgtggggcgccttcgcggtgtcgtacccgctcgccgcctacaccatcggtctcatgcagtccacccctatgcaccacgagctgttcctggtctggtcctgcttcttcctcttcgtcctcgccagctccgacaccatcaccgcctactccctcgccgacgtcaagagccccgggatcatcctgctcaaccgaggcctccaggtcatctacgtcaccgtactgctccagtattactccaacgtgctctccgcgaagctcaagttgttcgtctttggagtgtggttggtcagcctggggaagattgcgttgagcgcactcagctaccggcaggccctacaatccgacgggttgcagagggacaaccagctcattactgactacatgatcaaccagaccgagtccagccatggcggcgccgaagatccaaataccaataccaataccaatcccgatcccatgctactccggcggaggtgcggcaactttcccttggccgagtccggcttgcctaagactaggaacctggttctcaatcgcctcctagaacaaggcagcactagagctttccaggtgatcgaagtggagctcggcttcctctacgacctgttctacacgaggtaccctttcgtctgccacgccgtcacgaccacattaccgcaccttgccatgtgcgccatcatggtgaccgtcggcgtgctgaccctcctctccccagcacttcgacactaccatcctacgcaccacagaagtatcatgctttacgacatcaacctcgacgtcgtcctcaccatggccatcatagtccttgtcattgttctggaggcctaccagttcgttgctgtgctcttctccgactggcagaaggtgaaggtgctgtgcaggtatgttctctggccgtcgtcgttgcagaataaccctttcatcgaggtgctgctgggtgtgctgtgctactgtggcagcggcaagtactggacgaggaagatgagacaatactccatcattcgccacgccattctcggccaccccgtcaaggactggctgtcgggcgtgactcgtgggtggctggacaatctgatgttcaacagtggtaagacccgatcagcgaagctgtcgggcgacctgcagaatgcgctcgcttctcccctgaagaaaagcggtggcgttctcagcgacggagccgccggcggcggcggcgaccaacaacgtcgtcaccgtgaaatcgcgatgagtttgtcgaggtactgcgcgtacctggtgtcgtccgcgccggatcttttgccagaccaccaatacaccacccagacgatcgccgaggcagtgctgctcgatctccgccgctgcctccacggctgtacgtcgaacgaagctgcagttcttaagctccaggacacggcaaagctagcgattcggacgccgagcacatcggcgcctgacagcatccacgtcctcggagtgaggcttgcagaagacctgatgaagatcggggaggcgaagaggtgggaggtcttggctgacttctgggcggagctgatgctgttcgtcaccccggcggacaatgcgatggcgcacgtcgagcacctgacaatgggcggcgagctcattacccacctctgggctctcctcacacacgcgggcatcgtccagcgcccttctcacgccacgcagtcacaatcggtgtga
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| Protein seq | MWVCNATAALPPDCDLRQLARIEALVLLCSVVLALLVFLGSSRRYSGSAMVRFILWGAFAVSYPLAAYTIGLMQSTPMHHELFLVWSCFFLFVLASSDTITAYSLADVKSPGIILLNRGLQVIYVTVLLQYYSNVLSAKLKLFVFGVWLVSLGKIALSALSYRQALQSDGLQRDNQLITDYMINQTESSHGGAEDPNTNTNTNPDPMLLRRRCGNFPLAESGLPKTRNLVLNRLLEQGSTRAFQVIEVELGFLYDLFYTRYPFVCHAVTTTLPHLAMCAIMVTVGVLTLLSPALRHYHPTHHRSIMLYDINLDVVLTMAIIVLVIVLEAYQFVAVLFSDWQKVKVLCRYVLWPSSLQNNPFIEVLLGVLCYCGSGKYWTRKMRQYSIIRHAILGHPVKDWLSGVTRGWLDNLMFNSGKTRSAKLSGDLQNALASPLKKSGGVLSDGAAGGGGDQQRRHREIAMSLSRYCAYLVSSAPDLLPDHQYTTQTIAEAVLLDLRRCLHGCTSNEAAVLKLQDTAKLAIRTPSTSAPDSIHVLGVRLAEDLMKIGEAKRWEVLADFWAELMLFVTPADNAMAHVEHLTMGGELITHLWALLTHAGIVQRPSHATQSQSV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0013250 | OsARC_02g0013250.01 | Chr02 | 11446195 | 11448378 | - | NAM | ||
| CDS seq | atgtgggtatgcaatgcgaccgcggcactaccgcccgactgcgatctccgccagctggcccggatcgaagccctggtgctcctctgttccgtcgtcctcgcgttgctcgtcttcctcggctcctcgaggcgctacagcggcagcgccatggtccggttcatcctgtggggcgccttcgcggtgtcgtacccgctcgccgcctacaccatcggtctcatgcagtccacccctatgcaccacgagctgttcctggtctggtcctgcttcttcctcttcgtcctcgccagctccgacaccatcaccgcctactccctcgccgacgtcaagagccccgggatcatcctgctcaaccgaggcctccaggtcatctacgtcaccgtactgctccagtattactccaacgtgctctccgcgaagctcaagttgttcgtctttggagtgtggttggtcagcctggggaagattgcgttgagcgcactcagctaccggcaggccctacaatccgacgggttgcagagggacaaccagctcattactgactacatgatcaaccagaccgagtccagccatggcggcgccgaagatccaaataccaataccaataccaatcccgatcccatgctactccggcggaggtgcggcaactttcccttggccgagtccggcttgcctaagactaggaacctggttctcaatcgcctcctagaacaaggcagcactagagctttccaggtgatcgaagtggagctcggcttcctctacgacctgttctacacgaggtaccctttcgtctgccacgccgtcacgaccacattaccgcaccttgccatgtgcgccatcatggtgaccgtcggcgtgctgaccctcctctccccagcacttcgacactaccatcctacgcaccacagaagtatcatgctttacgacatcaacctcgacgtcgtcctcaccatggccatcatagtccttgtcattgttctggaggcctaccagttcgttgctgtgctcttctccgactggcagaaggtgaaggtgctgtgcaggtatgttctctggccgtcgtcgttgcagaataaccctttcatcgaggtgctgctgggtgtgctgtgctactgtggcagcggcaagtactggacgaggaagatgagacaatactccatcattcgccacgccattctcggccaccccgtcaaggactggctgtcgggcgtgactcgtgggtggctggacaatctgatgttcaacagtggtaagacccgatcagcgaagctgtcgggcgacctgcagaatgcgctcgcttctcccctgaagaaaagcggtggcgttctcagcgacggagccgccggcggcggcggcgaccaacaacgtcgtcaccgtgaaatcgcgatgagtttgtcgaggtactgcgcgtacctggtgtcgtccgcgccggatcttttgccagaccaccaatacaccacccagacgatcgccgaggcagtgctgctcgatctccgccgctgcctccacggctgtacgtcgaacgaagctgcagttcttaagctccaggacacggcaaagctagcgattcggacgccgagcacatcggcgcctgacagcatccacgtcctcggagtgaggcttgcagaagacctgatgaagatcggggaggcgaagaggtgggaggtcttggctgacttctgggcggagctgatgctgttcgtcaccccggcggacaatgcgatggcgcacgtcgagcacctgacaatgggcggcgagctcattacccacctctgggctctcctcacacacgcgggcatcgtccagcgcccttctcacgccacgcagtcacaatcggtgtga
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| Protein seq | MWVCNATAALPPDCDLRQLARIEALVLLCSVVLALLVFLGSSRRYSGSAMVRFILWGAFAVSYPLAAYTIGLMQSTPMHHELFLVWSCFFLFVLASSDTITAYSLADVKSPGIILLNRGLQVIYVTVLLQYYSNVLSAKLKLFVFGVWLVSLGKIALSALSYRQALQSDGLQRDNQLITDYMINQTESSHGGAEDPNTNTNTNPDPMLLRRRCGNFPLAESGLPKTRNLVLNRLLEQGSTRAFQVIEVELGFLYDLFYTRYPFVCHAVTTTLPHLAMCAIMVTVGVLTLLSPALRHYHPTHHRSIMLYDINLDVVLTMAIIVLVIVLEAYQFVAVLFSDWQKVKVLCRYVLWPSSLQNNPFIEVLLGVLCYCGSGKYWTRKMRQYSIIRHAILGHPVKDWLSGVTRGWLDNLMFNSGKTRSAKLSGDLQNALASPLKKSGGVLSDGAAGGGGDQQRRHREIAMSLSRYCAYLVSSAPDLLPDHQYTTQTIAEAVLLDLRRCLHGCTSNEAAVLKLQDTAKLAIRTPSTSAPDSIHVLGVRLAEDLMKIGEAKRWEVLADFWAELMLFVTPADNAMAHVEHLTMGGELITHLWALLTHAGIVQRPSHATQSQSV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0297200 | SBH | 0.099488 | 0.101352 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g19680 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0297200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0013390 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0013580 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0013410 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0013230 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0182400 | RBH | 0 | 0 | 0.012891 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0013010 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0215900 | SBH | 0.0067345 | 0.1308055 | 0.0047685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0013570 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0013120 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0013630 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0013460 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0013290 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G013610 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0013370 | SBH | 0.0 | 0.0 | 0.0 |
