Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0012270 | OGI:02033040 | 7/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:10420010-10423346 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgagcttatccaagaccattgggttcattagtggcatcaatgagtgtgtaaatttatttcaatgggctacatctgctctttccactctccactctcgatgcagtggaaaacagcagcaaaagcttcagggtgaattattgcagttgcagagtagccttcaacgtcttagggatactcttcctgcaaattatgatctcattgatcgagcagagtggaggatccataaacactgtgtggccaatctccttccaaatataaaggatgcagtgtacaatgctgatgaccttcttgatgagtttagatggtatgaacaaaaggtagcactggaaagtaatgcaaaccaatctccttttatggacttcttcaataatatgattcaaggaagcttcaataaagtgaatgatatcatggaaaggctggataatatttcaagtcagttggagaggatgggattgcatgaaattccccaacgatttgacaaatcacttaggccagagactagctctttcccaaatgagagaaaaatatttggtcgtgacaaggaactgaagaaagttatggaattgctcggtgtaccgataaatctcaccagggcctgttacaagcgtaagagaaatagtagcacggctgatgcatcaatgagcacatcagaaaagtcaagaatatcatgtttttctgtgttgccaattgttggaattgggggtgttggaaagaccactttggctcaacatatatgcaatcatccacaagtgaagtcccatttcgacctaataatttggacatgcgtctcagacgattttgatgcaacaaggttaattaaagaggcaatacaatcctcttcaggaaaagaggcaactactgataatttgaattgtctgcaacttggtctttctaacattgtgaacaacaaaaggttcttaattatacttgatgacgtctgggatgatgccttgaaggagaatgggcagtgttgggagaggctttgtttacctttagaaaatgggctacagggaagtatggttttggtcaccaccagatcttcaaaagttgctgatggagtgagcacaatggacccatttacattggatggtttaaaggatgacatattctgggatttcttcaaactgtgtgcttttgggtctcagagttctaacaatgatcctgatctagaggacattggtagaggaatacttcctaagttgaagggttctcctttagcagccaaaacacttggacgcctgttaaggatgaaccttcaaattccatactggaataatatactattgagtgaactgtgggatttgaaacaagaggaaactgacattttgcccgcccttagattgagttacatgtacttaccattccatttgaagagatgcttctcattctgtgctgtgtacccgaaagatcataaatttgaaaagaacattttagctgaaatttgggtagcagaaggctttgtggaatctgatggtggctttccaattctagacattggccatcggtactttgaagaccttgtaagtcggtccttctttcaaaaagttcgtggtacatatgtaatccatgacctgatgcatgacatggcacaactagtttcaaagcatgaatgcttcaccataaaagaattgagtgactttcagaaagttcctcggaatgtttgccatttgatgatactggattctagaaactttgattgttccaacttactgagcctatgtgagcacacgaagttgcgtactctactctgcgaaaagtctctaataagcaatataactttagcttcagtaatggaccgttggtgtagtgaacttcgacatatacgtgtgttttcttgtgtttccctaaaggagattccaatgagcattggcaatttgaaacatcttcggtaccttcgaatctccaaaaaatgtccttttcactgacttccaccagagatatgttggctatataaattgcagtttctttatgctacaaaatgcgcgctagaaagcttgccaagtgacttcagtaagttaatcaacctacagacatatgaatcagtgggatttgcatactatcgaatgaagaacctactgcctgttgcaggtaacgatcgaaatgttagattgatgaagaatttgaaccaattctgtggggatttggacatatatcctaggggatttagtaaggatcttgcaattgaaattgatcttaaaaacaagaaagatctcagaagactgaccctgaattggttgttcagttcatgtaaggacaatgaaatagtgcttcaagtcctgcaacctcccaccaatctgaaatgtctagaagtcgctggttatggaggtgaatctcttccatgctggagcaataacggcagcatttctgttttcccatccctgaccgacctagcaatttcttCctgtgaaaagttatcaagcctcgaccacttcctacaggcagattacatgccggtccttgagagaataagtataagagagtgtgcaaacgtaacatcactgcaaactgaaaggtttggtgaatttagttgccttggagattttactgtgtctaattgcccgaaacttttccataattcaggaagcttatcagtgccaaccctcaagaatctggagttgcgtaattccggtattcttctcagcaatattgagtgctcctccctcacctccttgtcctttaaatgtgtgcacgtgacagccattcccatacaactcttgagtggtaaccttccatctctacaaaagttaaacataatcgagtgtgaatctctcacatttattggagaatcgtatcccctcaatggagcattctcattccttactgtcctaatcattgaatgctgccacagattgccaaccctcgatggcctcctgaagaaagaacatctgcccgccattgagattattaaaatttattcttgtactgggttactgtccctgcccggtgaaaggtttgggagttttacttgtctcagtgatttgagaatttctcattgtccaaatatcaattggcaaagtggattggttttgccatcatatctcaaaaggctatcccatgaataattgtgggaatttttctgcctggtttcccaactgcctgggcagcctcacctgcctcgttgaactgacaatgattaagtgtcacggtatagaatcctttccaaaccaaatgtggagaagcaatctcgcctcactcaaggaattgcacattgctgattgcccagatctagtttcaatcggtgcggtgaagccaatctcaaaaataaagacggtgtacatatatgagtgtcagaagttgacgacagtaaagcagcctttcaccagaagaggaaggtaa
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| CDS seq | atgagcttatccaagaccattgggttcattagtggcatcaatgagtgtgtaaatttatttcaatgggctacatctgctctttccactctccactctcgatgcagtggaaaacagcagcaaaagcttcagggtgaattattgcagttgcagagtagccttcaacgtcttagggatactcttcctgcaaattatgatctcattgatcgagcagagtggaggatccataaacactgtgtggccaatctccttccaaatataaaggatgcagtgtacaatgctgatgaccttcttgatgagtttagatggtatgaacaaaaggtagcactggaaagtaatgcaaaccaatctccttttatggacttcttcaataatatgattcaaggaagcttcaataaagtgaatgatatcatggaaaggctggataatatttcaagtcagttggagaggatgggattgcatgaaattccccaacgatttgacaaatcacttaggccagagactagctctttcccaaatgagagaaaaatatttggtcgtgacaaggaactgaagaaagttatggaattgctcggtgtaccgataaatctcaccagggcctgttacaagcgtaagagaaatagtagcacggctgatgcatcaatgagcacatcagaaaagtcaagaatatcatgtttttctgtgttgccaattgttggaattgggggtgttggaaagaccactttggctcaacatatatgcaatcatccacaagtgaagtcccatttcgacctaataatttggacatgcgtctcagacgattttgatgcaacaaggttaattaaagaggcaatacaatcctcttcaggaaaagaggcaactactgataatttgaattgtctgcaacttggtctttctaacattgtgaacaacaaaaggttcttaattatacttgatgacgtctgggatgatgccttgaaggagaatgggcagtgttgggagaggctttgtttacctttagaaaatgggctacagggaagtatggttttggtcaccaccagatcttcaaaagttgctgatggagtgagcacaatggacccatttacattggatggtttaaaggatgacatattctgggatttcttcaaactgtgtgcttttgggtctcagagttctaacaatgatcctgatctagaggacattggtagaggaatacttcctaagttgaagggttctcctttagcagccaaaacacttggacgcctgttaaggatgaaccttcaaattccatactggaataatatactattgagtgaactgtgggatttgaaacaagaggaaactgacattttgcccgcccttagattgagttacatgtacttaccattccatttgaagagatgcttctcattctgtgctgtgtacccgaaagatcataaatttgaaaagaacattttagctgaaatttgggtagcagaaggctttgtggaatctgatggtggctttccaattctagacattggccatcggtactttgaagacctttttctttatgctacaaaatgcgcgctagaaagcttgccaagtgacttcagtaacgatcgaaatgttagattgatgaagaatttgaaccaattctgtggggatttggacatatatcctaggggatttagtaaggatcttgcaattgaaattgatcttaaaaacaagaaagatctcagaagactgaccctgaattggttgttcagttcatgtaaggacaatgaaatagtgcttcaagtcctgcaacctcccaccaatctgaaatgtctagaagtcgctggttatggaggtgaatctcttccatgctggagcaataacggcagcatttctgttttcccatccctgaccgacctagcaatttcttCctgtgaaaagttatcaagcctcgaccacttcctacaggcagattacatgccggtccttgagagaataagtataagagagtgtgcaaacgtaacatcactgcaaactgaaaggtttggtgaatttagttgccttggagattttactgtgtctaattgcccgaaacttttccataattcaggaagcttatcagtgccaaccctcaagaatctggagttgcgtaattccggtattcttctcagcaatattgagtgctcctccctcacctccttgtcctttaaatgtgtgcacgtgacagccattcccatacaactcttgagtggtaaccttccatctctacaaaagttaaacataatcgagtgtgaatctctcacatttattggagaatcgtatcccctcaatggagcattctcattccttactgtcctaatcattgaatgctgccacagattgccaaccctcgatggcctcctgaagaaagaacatctgcccgccattgagattattaaaatttattcttgtactgggttactgtccctgcccgaatttctcattgtccaaatatcaattggcaaagtggattggttttgccatcatatctcaaaaggctatcccatgaataattgtgggaatttttctgcctggtttcccaactgcctgggcagcctcacctgcctcgttgaactgacaatgattaagtgtcacggtatagaatcctttccaaaccaaatgtggagaagcaatctcgcctcactcaaggaattgcacattgctgattgcccagatctagtttcaatcggtgcggtgaagccaatctcaaaaataaagacggtgtacatatatgagtgtcagaagttgacgacagtaaagcagcctttcaccagaagaggaaggtaa
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| Protein seq | MSLSKTIGFISGINECVNLFQWATSALSTLHSRCSGKQQQKLQGELLQLQSSLQRLRDTLPANYDLIDRAEWRIHKHCVANLLPNIKDAVYNADDLLDEFRWYEQKVALESNANQSPFMDFFNNMIQGSFNKVNDIMERLDNISSQLERMGLHEIPQRFDKSLRPETSSFPNERKIFGRDKELKKVMELLGVPINLTRACYKRKRNSSTADASMSTSEKSRISCFSVLPIVGIGGVGKTTLAQHICNHPQVKSHFDLIIWTCVSDDFDATRLIKEAIQSSSGKEATTDNLNCLQLGLSNIVNNKRFLIILDDVWDDALKENGQCWERLCLPLENGLQGSMVLVTTRSSKVADGVSTMDPFTLDGLKDDIFWDFFKLCAFGSQSSNNDPDLEDIGRGILPKLKGSPLAAKTLGRLLRMNLQIPYWNNILLSELWDLKQEETDILPALRLSYMYLPFHLKRCFSFCAVYPKDHKFEKNILAEIWVAEGFVESDGGFPILDIGHRYFEDLFLYATKCALESLPSDFSNDRNVRLMKNLNQFCGDLDIYPRGFSKDLAIEIDLKNKKDLRRLTLNWLFSSCKDNEIVLQVLQPPTNLKCLEVAGYGGESLPCWSNNGSISVFPSLTDLAISSCEKLSSLDHFLQADYMPVLERISIRECANVTSLQTERFGEFSCLGDFTVSNCPKLFHNSGSLSVPTLKNLELRNSGILLSNIECSSLTSLSFKCVHVTAIPIQLLSGNLPSLQKLNIIECESLTFIGESYPLNGAFSFLTVLIIECCHRLPTLDGLLKKEHLPAIEIIKIYSCTGLLSLPEFLIVQISIGKVDWFCHHISKGYPMNNCGNFSAWFPNCLGSLTCLVELTMIKCHGIESFPNQMWRSNLASLKELHIADCPDLVSIGAVKPISKIKTVYIYECQKLTTVKQPFTRRGR |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0012270 | OsARC_02g0012270.01 | Chr02 | 10420010 | 10423346 | + | NAM | ||
| CDS seq | atgagcttatccaagaccattgggttcattagtggcatcaatgagtgtgtaaatttatttcaatgggctacatctgctctttccactctccactctcgatgcagtggaaaacagcagcaaaagcttcagggtgaattattgcagttgcagagtagccttcaacgtcttagggatactcttcctgcaaattatgatctcattgatcgagcagagtggaggatccataaacactgtgtggccaatctccttccaaatataaaggatgcagtgtacaatgctgatgaccttcttgatgagtttagatggtatgaacaaaaggtagcactggaaagtaatgcaaaccaatctccttttatggacttcttcaataatatgattcaaggaagcttcaataaagtgaatgatatcatggaaaggctggataatatttcaagtcagttggagaggatgggattgcatgaaattccccaacgatttgacaaatcacttaggccagagactagctctttcccaaatgagagaaaaatatttggtcgtgacaaggaactgaagaaagttatggaattgctcggtgtaccgataaatctcaccagggcctgttacaagcgtaagagaaatagtagcacggctgatgcatcaatgagcacatcagaaaagtcaagaatatcatgtttttctgtgttgccaattgttggaattgggggtgttggaaagaccactttggctcaacatatatgcaatcatccacaagtgaagtcccatttcgacctaataatttggacatgcgtctcagacgattttgatgcaacaaggttaattaaagaggcaatacaatcctcttcaggaaaagaggcaactactgataatttgaattgtctgcaacttggtctttctaacattgtgaacaacaaaaggttcttaattatacttgatgacgtctgggatgatgccttgaaggagaatgggcagtgttgggagaggctttgtttacctttagaaaatgggctacagggaagtatggttttggtcaccaccagatcttcaaaagttgctgatggagtgagcacaatggacccatttacattggatggtttaaaggatgacatattctgggatttcttcaaactgtgtgcttttgggtctcagagttctaacaatgatcctgatctagaggacattggtagaggaatacttcctaagttgaagggttctcctttagcagccaaaacacttggacgcctgttaaggatgaaccttcaaattccatactggaataatatactattgagtgaactgtgggatttgaaacaagaggaaactgacattttgcccgcccttagattgagttacatgtacttaccattccatttgaagagatgcttctcattctgtgctgtgtacccgaaagatcataaatttgaaaagaacattttagctgaaatttgggtagcagaaggctttgtggaatctgatggtggctttccaattctagacattggccatcggtactttgaagacctttttctttatgctacaaaatgcgcgctagaaagcttgccaagtgacttcagtaacgatcgaaatgttagattgatgaagaatttgaaccaattctgtggggatttggacatatatcctaggggatttagtaaggatcttgcaattgaaattgatcttaaaaacaagaaagatctcagaagactgaccctgaattggttgttcagttcatgtaaggacaatgaaatagtgcttcaagtcctgcaacctcccaccaatctgaaatgtctagaagtcgctggttatggaggtgaatctcttccatgctggagcaataacggcagcatttctgttttcccatccctgaccgacctagcaatttcttCctgtgaaaagttatcaagcctcgaccacttcctacaggcagattacatgccggtccttgagagaataagtataagagagtgtgcaaacgtaacatcactgcaaactgaaaggtttggtgaatttagttgccttggagattttactgtgtctaattgcccgaaacttttccataattcaggaagcttatcagtgccaaccctcaagaatctggagttgcgtaattccggtattcttctcagcaatattgagtgctcctccctcacctccttgtcctttaaatgtgtgcacgtgacagccattcccatacaactcttgagtggtaaccttccatctctacaaaagttaaacataatcgagtgtgaatctctcacatttattggagaatcgtatcccctcaatggagcattctcattccttactgtcctaatcattgaatgctgccacagattgccaaccctcgatggcctcctgaagaaagaacatctgcccgccattgagattattaaaatttattcttgtactgggttactgtccctgcccgaatttctcattgtccaaatatcaattggcaaagtggattggttttgccatcatatctcaaaaggctatcccatgaataattgtgggaatttttctgcctggtttcccaactgcctgggcagcctcacctgcctcgttgaactgacaatgattaagtgtcacggtatagaatcctttccaaaccaaatgtggagaagcaatctcgcctcactcaaggaattgcacattgctgattgcccagatctagtttcaatcggtgcggtgaagccaatctcaaaaataaagacggtgtacatatatgagtgtcagaagttgacgacagtaaagcagcctttcaccagaagaggaaggtaa
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| Protein seq | MSLSKTIGFISGINECVNLFQWATSALSTLHSRCSGKQQQKLQGELLQLQSSLQRLRDTLPANYDLIDRAEWRIHKHCVANLLPNIKDAVYNADDLLDEFRWYEQKVALESNANQSPFMDFFNNMIQGSFNKVNDIMERLDNISSQLERMGLHEIPQRFDKSLRPETSSFPNERKIFGRDKELKKVMELLGVPINLTRACYKRKRNSSTADASMSTSEKSRISCFSVLPIVGIGGVGKTTLAQHICNHPQVKSHFDLIIWTCVSDDFDATRLIKEAIQSSSGKEATTDNLNCLQLGLSNIVNNKRFLIILDDVWDDALKENGQCWERLCLPLENGLQGSMVLVTTRSSKVADGVSTMDPFTLDGLKDDIFWDFFKLCAFGSQSSNNDPDLEDIGRGILPKLKGSPLAAKTLGRLLRMNLQIPYWNNILLSELWDLKQEETDILPALRLSYMYLPFHLKRCFSFCAVYPKDHKFEKNILAEIWVAEGFVESDGGFPILDIGHRYFEDLFLYATKCALESLPSDFSNDRNVRLMKNLNQFCGDLDIYPRGFSKDLAIEIDLKNKKDLRRLTLNWLFSSCKDNEIVLQVLQPPTNLKCLEVAGYGGESLPCWSNNGSISVFPSLTDLAISSCEKLSSLDHFLQADYMPVLERISIRECANVTSLQTERFGEFSCLGDFTVSNCPKLFHNSGSLSVPTLKNLELRNSGILLSNIECSSLTSLSFKCVHVTAIPIQLLSGNLPSLQKLNIIECESLTFIGESYPLNGAFSFLTVLIIECCHRLPTLDGLLKKEHLPAIEIIKIYSCTGLLSLPEFLIVQISIGKVDWFCHHISKGYPMNNCGNFSAWFPNCLGSLTCLVELTMIKCHGIESFPNQMWRSNLASLKELHIADCPDLVSIGAVKPISKIKTVYIYECQKLTTVKQPFTRRGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.025586 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0282500 | SBH | 0.162010 | 0.084188 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g18070 | RBH | 1.029873 | 0.741769 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0282500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0012430 | RBH | 0.000000 | 0.0 | 0.226028 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0012600 | RBH | 0.091875 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0012450 | RBH | 0.109816 | 0.0 | 0.476673 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0012330 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0012170 | SBH | 0.000000 | 1.528235 | 1.645926 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0163100 | SBH | 0.105279 | 0.4797575 | 0.327369 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0012030 | SBH | 0.065280 | 0.000000 | 0.164107 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0175300 | RBH | 1.8649625 | 1.872684 | 0.0629125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0012590 | SBH | 0.0 | 0.027518 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0012170 | SBH | 0.0 | 2.057057 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0012590 | SBH | 0.000000 | 3.176401 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0012450 | SBH | 0.083626 | 0.0 | 0.052309 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0012210 | SBH | 0.0 | 0.357664 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G012590 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0012360 | SBH | 0.0 | 7.162156 | 0.0 |
