Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0047090 | OGI:01123890 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:42679610-42684623 | ||||||||
| Gene Symbol | SR45, OsSR45 | ||||||||||
| DNA seq | cccctccctcagacgacccccgaccaaaaccctagcccccaaacccgcccatcggtcgcctccgccgccggagacgatggcgaagccgcgccgcggccgctccgcctcgcgctcctcctcgggatcctcctctcgctcgccgtcccgctccgcctcctcgggctccggctcctcccggtcgcgctcccgctcccgctccttctcgtcgtcgtcgtccccttcacggagccgctccccacccgctgccaaggccaggtgagaccccccgcctctcccccgcgatgccatctgcttacgtctttagatttgtattcttggcgtgctttgttcagagctgcgaatgcacgctgccgctctcggtctgggggtgttttaggtttggatttttgttctgcgcaatcgatggtgccgtcaagtacgatagtgtttttttttagtttttagcattgtgttagatttagtaatttctgcatatcttttgtaaaaacaacaggagctcaatagtagctttggtagttagttattccttagacctatttaggaagttgaagatggtattggacattgtttagacccaatttttctaggtacatattgcaatatgtgtatgtacatagaggattagaggtatttattctattgcgtatgcgtcaaacagtataggcgtagtttaaccatttaagattggcttagtcttgatttccatcatgtccaaacatcacgaaaccgtgtctccgaagactacgagcaaccactatgtaactgagggaatattttattacaatgaatgacagtacagtcttgtaccccctgcagtagacttgctctataatacataggttacataggaaacttatctttctgaaacttatctccttgtatgtgaattcatttcgcctcatgttttttgttcttgtttctgctttcatttcctttcattgttgttactttgattccattagagtgtgcactaagatacttgagtacccttcatgctttctgctttcattaacctggatcattggtggttttcaatttaatttgcttgtcatctttgttctccctcacttacatatgggtgatattatatgtgcagctcacctggggcacggagaggtcgatctccttcatcccctgctaagagaggatcgccatcaaagaaagggcgttcaccatcaccaccaccacctaaaaaggcttcacctcctaggttcagttatacactgctttaatgcttatatgtttatagacatgctgtttgaagtttgagcttgctaatgttttatctgacttgaagtatttattcagaaacaactataatagtatgcatataatattaattgttgggcatcaatattttttcgtcgtaatatctatcgtgtttcgagctttgaactccttggttaacaaattacaaatagctgtagcttctgatactttttgttatttggcttctatgttgctatttgctcgtcatgtttcaattgtgatttatggtccctcTtttttattttgctaaaaaaattatgccttattctgaaaccaacaacgttacaacatgcgctgttctcttgtcctctccatcctacaatattgaatagtggttatttattttttcaggaaagcatctcctgctcctgaatcagttgttctccacattgatcatttgtccaggaatgttaatgaagctcatttgaaagagatattcggtgagtttgtccttagattttcatgtgaataattcctactggaagtttagtgtcaatgtgatttcttgttgggagctggatactattactctgcatttgagggcaaatttaattttatctttgcattgaaaatattttccttttctgatagttaactgagataagctagctcatgtccttacaaactctgttagaactgttggcattgtgcattttgtgtgtgtttaaatatctaatgtatgctctgtggtttatgttttttacctgaaccctgcattgagagagtatccagttgtaaggttggtcaagtgctaatcacactggcctttttgctggtagattcgtattggtgtttttcttgcaatcttactatatattgagtctactcttgattccatgtcctggtaaaacatgcaaatagttaatctaaactataaatttcagttattactcctagcccctaggcacactacactttctcctggatgttgtcctctctgtgcttattgctatgcactggttgtgctggatgccttgttagctttgcatcagatccgcctcatttcggtagtttgtgctgcttggttcattgtgcatagcattatgcccctcctggaccagcaaatcatccttgggctgcaggttgacaaccacagttgaactcctagtaaccccatgataattagagatctattttcactataaccattacaagtactgctgcatgatgtcatggttggctgtttgcagaaacaaagcatgatagcatcgcttcgtttttcagttattctgtatgaacaccaccagaaatatttggctgactagcctttgtctttcaggaaactttggtgaagtggttaacgtggagctatccatggatcgaatggtaagttaatgggttgcatttcattcacattatcagaggaacctcctgttggcatcaatactcatcgtgttcttatttaggtcaaccttcctcgtgggtatggatatattgagttcaagaagagaactgatgctgagaaagctcttctttacatggacggcgtatgttttctgccctgtgtttttgtttggtttgtttgataaacaagtgatcactgacttcaaagctgaaacatgtgcagggtcaaattgatgggaatgttgtgaagttgagattcacacttgcaccacggcaaagggcttcttcaccaatgaaggcgcctccccctcccccaaaaagagatgttcctcataatgagaaaggcgctcctagtgctgaaaaggatgtgcagcagcgcagggaacgtaagcttctaaagcacagtgtgattttgtcagatggatggtattagtagcttggtattctggttctttcgtaggcacttctatcttctgattgttgcttttgctcaatctagatttaagtttgcgggtccatgttattagtttcgatgatttaataacataccaccttgtcaacagcatccccacgaaggaagccagcttcacctccacgcaaaagaactcctccaaaccgaaggattgaatctcccaggcggcaacctgatccatctcctaggcgtcgtcctgattctccacctattcgtcgtcgagcagatgcttcgcctgtcaggcgtggtgacacacctcctcgtcggagaccaggatctccagtgaaaaggcgttctccctctccaccacctagaaggcgtagatcaccaatgcggtgagcaatgtctcgatttctttcatatatatcttgggtattgtgactggaattcctgacactattctcacaacaacagtccttcacctaggaggcttcgtggaagcccatcaccacgcagacgctcccctgggcccattagacggcggtgagtcactttaatcttggctattgtgaatatgctttatgtaatcggcctgtctcatccagtaatataatacactatataaattaaaacttacatgtgcatgttccttcacttgtttcacccatattatgtgttggatctgttatttctgttttgtctgaaaagtgtgtgcccttctcatttccaactgtaaccattgttataTttttttcttttctccaggtcaccaccaccacccccaaggcggccaagaagccctcctggaagaaggctaccacctccacgtcgtcatagccgttctcccccgcctcgtcgtcccccttattcacgttccagatcaatttctcctcgaacgtaataaaattcactcgcatacatgtgtgcatactgcctctaaaatcttcaatagacgtctctttgatactgtattctaattctctccggcagcaggcgaggacctccattgaggcgtggaaggtctgattcatcgtattctcgatcacccagtcctccaagaaaggtaaatgctgaacctgctgtgttattcgtagacttgtatagagaatgtctgctccctctgtctcaaactataaggcgtataagttttttacagtcttcagcgtagagctttgaccattaattttgtttatagtatattataaactactacaaaattaaaatcacataaaagtactatcaaatacgaatctaatgatatcacatgcgtgacgcgaagcatatattttggtagcttaactattattcaaaagttacaaagattgactttcattcaaataatgataaccttatttgggacggagggagtatcctctgatgtttgcttctgctcttggttgtgcaattatttaatatattctgatcatagaatgtggttatatgctaatatgttttttcctttgaatagggaccaagaagggtatcaaggagccgcacccccccaaggtaacatgtcacctaatgttttgcatttattctcatgcaatttgcgttgtctagatattctagtgtaaaatacgcaaatgtttttcaggcatcgtagaggaagaagcatctctagcgacagccggagcagcagctcaccttccccgaggcgcaggtagaactcctgacattgcgttcctggcaggtaaaacttcttttgtttcttgactatcactatcgtttgcctgtgcttgtgtctttctgagagctcaagcggttggtttgaggggatacagagaactctgcttaaaagctttccagttaatctagattaccagtggagtctagtctgtgatctgtagttgtctactcagactcttgttggcattggttatgtagctcttcagtattatctgttctaacttcgtgactcttgcattccgaacctgaatattctgtggtgacacttgttcttaatactgttatcgttcgaagaagttccga
More
|
||||||||||
| CDS seq | cgacccccgaccaaaaccctagcccccaaacccgcccatcggtcgcctccgccgccggagacgatggcgaagccgcgccgcggccgctccgcctcgcgctcctcctcgggatcctcctctcgctcgccgtcccgctccgcctcctcgggctccggctcctcccggtcgcgctcccgctcccgctccttctcgtcgtcgtcgtccccttcacggagccgctccccacccgctgccaaggccagctcacctggggcacggagaggtcgatctccttcatcccctgctaagagaggatcgccatcaaagaaagggcgttcaccatcaccaccaccacctaaaaaggcttcacctcctaggaaagcatctcctgctcctgaatcagttgttctccacattgatcatttgtccaggaatgttaatgaagctcatttgaaagagatattcggaaactttggtgaagtggttaacgtggagctatccatggatcgaatggtcaaccttcctcgtgggtatggatatattgagttcaagaagagaactgatgctgagaaagctcttctttacatggacggcggtcaaattgatgggaatgttgtgaagttgagattcacacttgcaccacggcaaagggcttcttcaccaatgaaggcgcctccccctcccccaaaaagagatgttcctcataatgagaaaggcgctcctagtgctgaaaaggatgtgcagcagcgcagggaaccatccccacgaaggaagccagcttcacctccacgcaaaagaactcctccaaaccgaaggattgaatctcccaggcggcaacctgatccatctcctaggcgtcgtcctgattctccacctattcgtcgtcgagcagatgcttcgcctgtcaggcgtggtgacacacctcctcgtcggagaccaggatctccagtgaaaaggcgttctccctctccaccacctagaaggcgtagatcaccaatgcgtccttcacctaggaggcttcgtggaagcccatcaccacgcagacgctcccctgggcccattagacggcggtcaccaccaccacccccaaggcggccaagaagccctcctggaagaaggctaccacctccacgtcgtcatagccgttctcccccgcctcgtcgtcccccttattcacgttccagatcaatttctcctcgaacgcgaggacctccattgaggcgtggaaggtctgattcatcgtattctcgatcacccagtcctccaagaaagggaccaagaagggtatcaaggagccgcacccccccaaggcatcgtagaggaagaagcatctctagcgacagccggagcagcagctcaccttccccgaggcgc
More
|
||||||||||
| Protein seq | RPPTKTLAPKPAHRSPPPPETMAKPRRGRSASRSSSGSSSRSPSRSASSGSGSSRSRSRSRSFSSSSSPSRSRSPPAAKASSPGARRGRSPSSPAKRGSPSKKGRSPSPPPPKKASPPRKASPAPESVVLHIDHLSRNVNEAHLKEIFGNFGEVVNVELSMDRMVNLPRGYGYIEFKKRTDAEKALLYMDGGQIDGNVVKLRFTLAPRQRASSPMKAPPPPPKRDVPHNEKGAPSAEKDVQQRREPSPRRKPASPPRKRTPPNRRIESPRRQPDPSPRRRPDSPPIRRRADASPVRRGDTPPRRRPGSPVKRRSPSPPPRRRRSPMRPSPRRLRGSPSPRRRSPGPIRRRSPPPPPRRPRSPPGRRLPPPRRHSRSPPPRRPPYSRSRSISPRTRGPPLRRGRSDSSYSRSPSPPRKGPRRVSRSRTPPRHRRGRSISSDSRSSSSPSPRR |
||||||||||
| Function | Serine/arginine-rich splicing factor SR45 [UniProtKB/Swiss-Prot:Q9SEE9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0047090 | OsARC_01g0047090.01 | Chr01 | 42679610 | 42684623 | + | NAM | ||
| CDS seq | cccctccctcagacgacccccgaccaaaaccctagcccccaaacccgcccatcggtcgcctccgccgccggagacgatggcgaagccgcgccgcggccgctccgcctcgcgctcctcctcgggatcctcctctcgctcgccgtcccgctccgcctcctcgggctccggctcctcccggtcgcgctcccgctcccgctccttctcgtcgtcgtcgtccccttcacggagccgctccccacccgctgccaaggccagagctgcgaatgcacgctgccgctctcggtctgggggtgttttaggaaagcatctcctgctcctgaatcagttgttctccacattgatcatttgtccaggaatgttaatgaagctcatttgaaagagatattcggaaactttggtgaagtggttaacgtggagctatccatggatcgaatggtcaaccttcctcgtgggtatggatatattgagttcaagaagagaactgatgctgagaaagctcttctttacatggacggcggtcaaattgatgggaatgttgtgaagttgagattcacacttgcaccacggcaaagggcttcttcaccaatgaaggcgcctccccctcccccaaaaagagatgttcctcataatgagaaaggcgctcctagtgctgaaaaggatgtgcagcagcgcagggaactccttcacctaggaggcttcgtggaagcccatcaccacgcagacgctcccctgggcccattagacggcggtcaccaccaccacccccaaggcggccaagaagccctcctggaagaaggctaccacctccacgtcgtcatagccgttctcccccgcctcgtcgtcccccttattcacgttccagatcaatttctcctcgaacggaccaagaagggtatcaaggagccgcacccccccaaggcatcgtag
More
|
|||||||
| Protein seq | PLPQTTPDQNPSPQTRPSVASAAGDDGEAAPRPLRLALLLGILLSLAVPLRLLGLRLLPVALPLPLLLVVVVPFTEPLPTRCQGQSCECTLPLSVWGCFRKASPAPESVVLHIDHLSRNVNEAHLKEIFGNFGEVVNVELSMDRMVNLPRGYGYIEFKKRTDAEKALLYMDGGQIDGNVVKLRFTLAPRQRASSPMKAPPPPPKRDVPHNEKGAPSAEKDVQQRRELLHLGGFVEAHHHADAPLGPLDGGHHHHPQGGQEALLEEGYHLHVVIAVLPRLVVPLIHVPDQFLLERTKKGIKEPHPPKAS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0047090 | OsARC_01g0047090.02 | Chr01 | 42679622 | 42684539 | + | IsoSeq | ||
| CDS seq | cgacccccgaccaaaaccctagcccccaaacccgcccatcggtcgcctccgccgccggagacgatggcgaagccgcgccgcggccgctccgcctcgcgctcctcctcgggatcctcctctcgctcgccgtcccgctccgcctcctcgggctccggctcctcccggtcgcgctcccgctcccgctccttctcgtcgtcgtcgtccccttcacggagccgctccccacccgctgccaaggccagctcacctggggcacggagaggtcgatctccttcatcccctgctaagagaggatcgccatcaaagaaagggcgttcaccatcaccaccaccacctaaaaaggcttcacctcctaggaaagcatctcctgctcctgaatcagttgttctccacattgatcatttgtccaggaatgttaatgaagctcatttgaaagagatattcggaaactttggtgaagtggttaacgtggagctatccatggatcgaatggtcaaccttcctcgtgggtatggatatattgagttcaagaagagaactgatgctgagaaagctcttctttacatggacggcggtcaaattgatgggaatgttgtgaagttgagattcacacttgcaccacggcaaagggcttcttcaccaatgaaggcgcctccccctcccccaaaaagagatgttcctcataatgagaaaggcgctcctagtgctgaaaaggatgtgcagcagcgcagggaaccatccccacgaaggaagccagcttcacctccacgcaaaagaactcctccaaaccgaaggattgaatctcccaggcggcaacctgatccatctcctaggcgtcgtcctgattctccacctattcgtcgtcgagcagatgcttcgcctgtcaggcgtggtgacacacctcctcgtcggagaccaggatctccagtgaaaaggcgttctccctctccaccacctagaaggcgtagatcaccaatgcgtccttcacctaggaggcttcgtggaagcccatcaccacgcagacgctcccctgggcccattagacggcggtcaccaccaccacccccaaggcggccaagaagccctcctggaagaaggctaccacctccacgtcgtcatagccgttctcccccgcctcgtcgtcccccttattcacgttccagatcaatttctcctcgaacgcgaggacctccattgaggcgtggaaggtctgattcatcgtattctcgatcacccagtcctccaagaaagggaccaagaagggtatcaaggagccgcacccccccaaggcatcgtagaggaagaagcatctctagcgacagccggagcagcagctcaccttccccgaggcgc
More
|
|||||||
| Protein seq | RPPTKTLAPKPAHRSPPPPETMAKPRRGRSASRSSSGSSSRSPSRSASSGSGSSRSRSRSRSFSSSSSPSRSRSPPAAKASSPGARRGRSPSSPAKRGSPSKKGRSPSPPPPKKASPPRKASPAPESVVLHIDHLSRNVNEAHLKEIFGNFGEVVNVELSMDRMVNLPRGYGYIEFKKRTDAEKALLYMDGGQIDGNVVKLRFTLAPRQRASSPMKAPPPPPKRDVPHNEKGAPSAEKDVQQRREPSPRRKPASPPRKRTPPNRRIESPRRQPDPSPRRRPDSPPIRRRADASPVRRGDTPPRRRPGSPVKRRSPSPPPRRRRSPMRPSPRRLRGSPSPRRRSPGPIRRRSPPPPPRRPRSPPGRRLPPPRRHSRSPPPRRPPYSRSRSISPRTRGPPLRRGRSDSSYSRSPSPPRKGPRRVSRSRTPPRHRRGRSISSDSRSSSSPSPRR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr01 | 42682608 | 42683109 | + | OsARC_01g0047090.02 | OsARC_01g0047090.02,OsARC_01g0047090.01 | All |
| SE | Chr01 | 42683531 | 42684103 | + | OsARC_01g0047090.02 | OsARC_01g0047090.02,OsARC_01g0047090.01 | All |
| MX | Chr01 | 42679864 | 42681230 | + | OsARC_01g0047090.01 | OsARC_01g0047090.02,OsARC_01g0047090.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.254351 | 0.792741 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0959000 | RBH | 5.448492 | 7.416622 | 7.068901 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g72890 | RBH | 3.790565 | 4.921242 | 1.822332 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0959000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0047720 | RBH | 2.303030 | 10.531919 | 10.566509 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0047210 | RBH | 0.158000 | 10.825743 | 6.907573 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047680 | RBH | 3.165895 | 9.946219 | 16.519741 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046620 | RBH | 13.558756 | 27.582142 | 23.944765 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0692800 | SBH | 2.048049 | 9.8534125 | 11.384378 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0046120 | RBH | 1.049114 | 1.642772 | 2.933770 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0694300 | RBH | 6.241728 | 41.078674 | 23.0512745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046710 | RBH | 0.665312 | 0.520040 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046550 | RBH | 1.084926 | 20.761984 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046880 | RBH | 4.677125 | 36.820549 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0046870 | RBH | 0.204346 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046640 | RBH | 0.683623 | 16.193274 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046900 | RBH | 1.474512 | 7.166925 | 6.648632 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046660 | RBH | 4.206734 | 28.525003 | 20.010122 |
