Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0044660 | OGI:01119080 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:40765331-40765675 | ||||||||
| Gene Symbol | MADS51, OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36 | ||||||||||
| DNA seq | ATGGCGCGGAGGGGGAGAGTGCAGCTGAGGCGGATCGAGGACAAGGCGAGCCGGCAGGTGCGGTTCTCCAAGAGGAGGGCGGGGCTGTTCAAGAAGGCGTTCGAGCTCGCCCTGCTCTGCGACGCGGAGGTGGCGCTCCTCGTCTTCTCCCCCGCCGGCAAAGCTCTACGAGTACTCCTCCTCCAGGTTCGCTCTCTGATTCCATCCCCCTCCCTCCCCCCGCCTCCTCCTGTTGTTAGTTACGATCAAAACCCAGCCGCGGCCGAATCGAGACCCCCCGCCGCGGCAGGATCTGCCGATTGGTTCCGATCCCATTTCGTTCTGCTATCCCGGATCGATCGATGA |
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| CDS seq | ATGGCGCGGAGGGGGAGAGTGCAGCTGAGGCGGATCGAGGACAAGGCGAGCCGGCAGGTGCGGTTCTCCAAGAGGAGGGCGGGGCTGTTCAAGAAGGCGTTCGAGCTCGCCCTGCTCTGCGACGCGGAGGTGGCGCTCCTCGTCTTCTCCCCCGCCGGCAAAGCTCTACGAGTACTCCTCCTCCAGGTTCGCTCTCTGATTCCATCCCCCTCCCTCCCCCCGCCTCCTCCTGTTGTTAGTTACGATCAAAACCCAGCCGCGGCCGAATCGAGACCCCCCGCCGCGGCAGGATCTGCCGATTGGTTCCGATCCCATTTCGTTCTGCTATCCCGGATCGATCGATGA |
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| Protein seq | MARRGRVQLRRIEDKASRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGKALRVLLLQVRSLIPSPSLPPPPPVVSYDQNPAAAESRPPAAAGSADWFRSHFVLLSRIDR |
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| Function | MADS-box transcription factor 51 [UniProtKB/Swiss-Prot:Q9XJ61] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0044660 | OsARC_01g0044660.01 | Chr01 | 40765331 | 40765675 | + | NAM | ||
| CDS seq | ATGGCGCGGAGGGGGAGAGTGCAGCTGAGGCGGATCGAGGACAAGGCGAGCCGGCAGGTGCGGTTCTCCAAGAGGAGGGCGGGGCTGTTCAAGAAGGCGTTCGAGCTCGCCCTGCTCTGCGACGCGGAGGTGGCGCTCCTCGTCTTCTCCCCCGCCGGCAAAGCTCTACGAGTACTCCTCCTCCAGGTTCGCTCTCTGATTCCATCCCCCTCCCTCCCCCCGCCTCCTCCTGTTGTTAGTTACGATCAAAACCCAGCCGCGGCCGAATCGAGACCCCCCGCCGCGGCAGGATCTGCCGATTGGTTCCGATCCCATTTCGTTCTGCTATCCCGGATCGATCGATGA
More
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| Protein seq | MARRGRVQLRRIEDKASRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGKALRVLLLQVRSLIPSPSLPPPPPVVSYDQNPAAAESRPPAAAGSADWFRSHFVLLSRIDR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.445582 | 0.254765 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0922800 | SBH | 2.491393 | 4.039038 | 20.208155 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g69850 | RBH | 1.652358 | 2.292499 | 4.314486 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0922800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0045290 | RBH | 0.310900 | 7.583321 | 1.172813 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0044820 | RBH | 0.195630 | 4.873822 | 0.607227 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0045200 | RBH | 0.961376 | 8.003731 | 2.519115 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0023310 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0044230 | RBH | 17.015345 | 20.054863 | 26.689508 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0664500 | SBH | 17.7338905 | 43.342838 | 57.9554175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0043850 | RBH | 2.228235 | 2.793294 | 4.891398 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0665900 | RBH | 9.866672 | 18.9492705 | 21.987079 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0044200 | SBH | 0.882736 | 0.894787 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0044160 | RBH | 2.136847 | 31.973047 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0044460 | SBH | 16.094032 | 58.790932 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0044450 | RBH | 6.609214 | 4.024427 | 4.518813 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0044210 | RBH | 0.151753 | 19.022730 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G044600 | RBH | 2.790366 | 13.326543 | 9.392465 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0044330 | SBH | 2.378686 | 60.516579 | 30.581951 |
