Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0043980 | OGI:01117870 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:40231978-40239833 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGCACGTACGGAAGACTCTTTTAATCACTCGTATTCGTGAATCATCTCATTAATACTTCTACATGACTACCGTAAATCATATACTAATATCCATTCAATATAAGAGTATTTTCAGACTCTGAGCCTAGACCAAGTATATGTTGATTTGGTCTGGCTTGGCTTGGCTTCTTTGTCTAAACTTAGACATGACAACATGGGTGCTCTAACCCGGTGATCCCTGCACAGGATACACCCTGCCTCAAATCAAAGCAAAAAGGGATTCACAAATGAATTATGTTGTACTTCAAACGGATCAAATCAAAAATGCTCATTATAATGTACTGAATGGATGCCCTTTTCTGATTGTATCTATGCAGCAACTGAGACATTTGAAAAGGTTGCGACAATTGGAGTGGTAGCAAATTTGACGGTCTATCTTGTGAAGCGCTTCAACATTGGGCAAATTGAGGCAGCTAATATTACCAACATATTCTTCGGTACGCTTAACTTTGCGCCATTGCTAGGCGCCTTCATCTCCGACGTCTACTTGGGAAGGTTCAAAACACTAGCCTATGGATGCTTCGCCAGCCTCCTGGTATGTCCATATGATGACCAAACCATCTCTCTTAGTAGTTTCATTTCACCTGCTTGGCAGCAGAAAGAAATGCAAGGTCACTTGTCATTGTCAAATAAGGCTTCACCCAACGAATAAAAAGATCAGCAATAGCTTAATGCTTTTTTTTCATTAGAAACGAAGAATGTACAATAAGCCCCAACTGATGCAAGAAACTGATATATAGTGCACATCCAACATTTTTGTTGATTTAAGCTCTTCCCAGGAGTGTAGTTCATCAACATGAACTCATTTTAATTTATTTATTTGCTAAAATAACAGGGGATGCTGGGAATGACTTTGTCTGCTCACTTCCAGCTCTCAAGCCACCGATCTGCCATGAAAAAACCCGACTAGGCGGAGGCTGCAACAGTCCATCAACACTCCAGCTAAGTGTGCTATACCTTTCTCTAGGCTTTCTAATTATCGGTGGAGGAGCGATCCGACCTTGTAGCTTGCCCTTTGGAGTAGACCAGTTTGATAAGACCGACGAAGAAGGTCGAAAGGGACTAAACAGCTATTATAATTGGTACTATGGAACAAGTACTGCTGCCCTTGTGTTATCTATGACTGTCATCATCTACATCCAGAACAATGTCAGCTGGCCAATAGGATTTGGCATACCCACATTACTCATGTTTCTCGCCATTATCATGTTATTTCTGGGTACCAACCTGTACGTCCATGTACAACCAGAGGGAAGCATATTTGCTGGAATTGCCCAGGTTTTAGTGGCTTCATTTAAAAAGAGAAATCTCAAGCTTCCTTGTCCTCATGATATAAACCAACAAGGATTGATGCTCTACAACCCTCCTTCCAAGGGCAACCGCGTATTCAGATTGCCACTTACTTCCCAGTTCAGGTAAACATCTGTTACCACTAAAGATGAACAGAATTGGAACTAATGTAGCTAGAGATGTAATCAACTTAAAGTGGAGGAAAAACTAAAACAATGACTAGTCATAGTGAAAGTATTAGAACATCCAACAAACTGAGAAGTGAGAAATGCATTGTCATATGTATATGTGCACACACTTTTACGCGTATAGTGTGCTTCAGGAGTTTTTGCAAGAACATTACAATGAATCGGATATGGGTTGGTTTTCTTGAAATTTATATCTGCATAAATCCCGAGGCACATTTGAAATTATGATGTTGCATGTATATATGTACATGTGGAAAAAAACGAAATTTGAAAAACATAAGTTCTTGACATTGTTCTATTTTATTGCCAAAACATTGTGAGTTTTCAAAGCAAAGCAACACCAAATAATTAATCAGGTTGTTGAATTTAGTGGTTTTTATTCATTACCTCTTACCAAGTTGTAAGACTCAGATACCTTTTATACAGTTGAATATTAAACTCATATAGATCATGCATATCATAACTTGCACGAGTATTTTGTATGCTTATCAACACGAGCACACATAAATATTTACTGATAGATGCTATATTGCTATCTATGTGCTGGGCAAGAAAATGCAGAAATTCATATTTGTTGGTAAATATACACCCTTTTTCCTCTAGTAAATGCATAGAATGCACCACATGCTTAAATGGAGTTAAGAAGAAACATGCTGGTCATATCAAACAAAATACTGACCCTTTCAAAGAATTATATGCTAGATGCCATCATAGTTTGATGCATGTTACTCATCCTCAGGTTTCTGAACAAGGGTGCAATTGTAATGGGTGATGATATAAATGTTGATGGTTCTGCATGAAACTCTTGGGAGCTTTGCAACGTCCAACAAATAGAGGAGGTCAAATGCTTAATAAGAATTGTGCCGGTTTGTATTTCTGGAGTCTTATGCTTTGTCGCATTGGCTCAGCAATTCACCTATATAATCTTGCAAACATTTACAATGGACTGTCACTTTGGGACGCACTTTGAAATCCCAGCAGGCTCTGTTGTATCCATATCCCTTATTGCCCTAACTCTATTCATCCCCATTTATGACCGGATTTTAGTACCAATAGCTAGACGATTCACTGGAGTGGAAAGTGGTATTACACTTCTACAGAGACAGGGTATAGGATTGGCCATTTCTCCCATTTCAATGGTGGTAGCAGGACTTGTTGAACGTAAGAGGAGGAACTCAGCCTTGTCGAATGGAGGAATATCGCCTATGTCAGTCTTGTGGCTTGCACCCCAACTTGTTTTAATGGGTATTGCTGAGGCCTTCAATGCAGTTGGACAAATAGAATTCTACAATAAGCAGTTTCCAGAGAACATGCAAACCCTAGCAGGATCTCTGTTCTTCTGTACTATAGCTGGAGCAAACTACCTGAGTACTGCTCTGGCAAACATCATGAGAAAGGTCACGACCAGAGATGGTCACTCAAGCTGGTTAACAGACAACATTAATCTTGGCAAACTCGACTATTACTTCTATTTTATTGCCCTTATGGGAGTCCTGAACCTTATTTATTTTCTTATATGCTCACACTTCTACCAATATAAGGTAATGTCACTCCATTCTGAAGAATCCATCAAAATACCTACCAAGGAAGAAGAAGCCACAGAGATCGACATTGACACAGATGCACCTAGCAAATGAATAGTGCAACTGCGAGTCTAATTGATCTGGCACAAGGAATATACTTTTGGACATGGTGACATATTCAAATTCCAATTTCAAATTCACTTTAGAAGAGGCTCTAATGTTTGTAACATCAAACAGACCTCTGTGTCATCTTATGGATGTGACAAAAACAAGTGTACCATAGCAAGGGGGTGACATGTTATCTAGCAAACATGAATAAAGAGTTTAAATGGCCTGTCCTGTTGTATTCGAAGTAATGGAGTGTGAGTGATAGCTTATGAAACTTAAACAAGTCCATAATGGTTATGCGACATGTAAGCACAGGTCATACACCATCTTTTTCTATTAGAGCCTTTAATGTGCAATATTTGAAATTCTTATAGATGCTTTTACGAACATGATTTGCAGTAACTAGCCATTTATCAGGTAATAAGAAAAAAGTGAGCTCTATTAATAGGTGAAACAAATTGCCAGGTTGTGTCATCTTTGAACTATTGCTGTCGGTAATCTCACATTCTCACACAGTGTGGGTGATCCTTCGTATACTTAATGTCTAATATAAGTAACTTTTTTTTATTAAAAAAAGTCATGCCAGGTGGAGAGATCTTATTTGATTGCTTAAAATGTTATATGATAAAAATCACAGAAATGTTTATATAGAATAAAGAATTTATGGTACCAAAAAAATCTTCATTCCAGAAATGTAATGAACATGTCAATCGTTAAACTCACCGTGGAAAGTCGTGGAACAACAACTGGAGCACCACGGACCTTGTCAAGAGCAAAACTTATCCGCAATGGTCGTCCTAGCATTACCTGTAGAATAAAAAGAAAGACCATGTTTATTTTCCTGTTTATTTTTCACTGAAACAGTTAATATTACAATCTGTTAGACATTTCTCTTCATCAAACAGTACCTTTCCATCCATAGCATCCTTGGCGCACTTAGCTTCATACTCGTTTGAGAAGTGCACAAACCCAAAACCTCTTGACCTTCCAGAGTTTTTGTCATACATTATTCTCACTGCATCATCAAATAGTCTTCATATAATTCTGTTCACTAATACCAGCGTAATGAATATGTAAGGAAGGGATTAAGCATTGCAATTTGTGGGGTAAATAGAATAAACAATAGCAAAACACATGTTGCCACACACATCTTATACCAGGCAAACACCAATATGCCTCCACCAGATAATTCCATGGCATATGCATATTGAGATGTCATCTTTCAGAATAAAACTATATGATAGGTGATAAATAATCACGCCACATATGAACCTGCTTCAAACAGAAGCAATAGCCATTGACACTGGGGCATACGCATGAAAAGACATGAATGGCAGCATCTATACAAATATGTGGGATAATTTAGACTTACAGAGCAGACAAATGTTCATTGATTGAAGAGAAGTGTTAGTACTTGGTAGATATATATGTCATGAAACAAATATAGCTTTCCTCTATGATTATCTATCGAGTGTCAACATTTGTGAACTATATCTGTTGGTGGGAGCATGAAACGTTAACACCTTTAAGGCAGAAAAGTGGGACAACGCTACTAGATCCTTGAACAAACATCCAAGATAAATTTTAAAGTGGCTGATTAATAGGGACTGCCAGGCTGCCAAATGAAATGGAAGTGCAAAGCAACACTTGCACATATGTAGAGGTGCACACCCAGCAGCCCCAATATACTGCTCATTTTTTTAAAAAAAAAAAAAACTGCCACAGCTGGTATTTACAGGCTCTATCACCAATTCTTTTTACTATCAATAGTATGTTGTTGTCCTAGCATGTAGGAAAGTCAACATGCACAATCCAGATGAGGGCATAAGGTCAGATGGAGGATCACCGTAAAAACTCCAAGGCAACTTTTAAAAAGGAAAAAAAAAGACAAATGAAAAAAAGGAAGTAATGAAAAATGAGTATGCACTAAACAAGCTGCCTTAGACCTTAGTGTGTCAGTACCATTAGAATCCATATTCACGTGTTAGAGATTCCTGGAGCAATAGTGAGTTGAGATGTGATATCGTTGGTCATGTTCCATAGACCAAGGCATATTTTTCTTTTAAAGAAAAAGGTCCAAGGCAATCATCTATTTCATCAACTTGCATTTGAAAATCATGCTTGATGCTTTACTTTTTCCACAGGAGACTTGGCAACCTGAAAGTGAATACTCAACTTATGCCTGAGATAGATTCCAATAGCTTGAGACAGACAGACAGTGAATACTAATTGTTTGATGTATCTTCTCTCTTCCCTAGGTAAGAGTTGTTCTACTATCTTCTGCTGTACGGCACTATCTCAATGGAACTAAGCCCTAAAGTTTTCCTTGTAATTCGTTTTGCATAACAGGATCTGACAGATTCAGCAGCTCTATATTTGCCAGATGATGCATAAGCATTAGAAAGTAACACAACATGCCCATAATCAAATGATTCCGTGGTGAGCACCTTCTCTGCAGCAACTTTAGTAAATTTCATGTCACCATGCAAATGCCCTCCTCCCATCAAAGCCTTCCAAGCATTTGCTCCTAATTTATTGTGAGTCAAGCTAGCCACTCCTGCTGCTTCCTCCAAGCGGCCAGCTCTTGCCAACATATCAACTATGCATCCGACATGCTCTGGGCATGGAATTATTCCCTTGTCATTAACCATTCTTCTAAAGACGAGCATCCCATCATCCACCAGTCCAGAGTGGCTACATGCTAGCAATGTGTTCAAATAAGTCACACTGTCTTGATCCTCGCTAGATTTCTCCATTTCATTGAAAAGTGATACTGCTTTCTCTCCTTGGCCATTTACACCATAGGATAAAATCATAGTATTCCATGAGACAGCATTCCGAGAAATCATCTCATCAAACGCTTTATGCGCTAAAGTCGCATATCCACACTTACCATAAACTGCAATGAGGGTATTAAGAACAGGTTTGTACAGACACAAACCCGATTTGTAACAATATGCATGAAGTTGAATACATAGTTCAAACTTAGCAACCTCATAGCAAGCAAGCAATAAGGTGACCAGTGTCACAGAATCAATCATAAAGGAACCTTCATGCCTCATCTTCGCAAAGAGATACATCCCTTCTAGGGCATATCCATTTTCTATATACGCTGACACCATTGCCGTCCATGAAACCAAGCTTTTCTCCATTGTACCATCAAACAACAGTCTTGCAGAACTTAAATCCTCACATTTAGAATACATTGTGATTAACGAGTTAACTGCAGGAAGCTCACCACTGAACCCACGGATTACAATCTCGTTATGAACCAACTTTCCTATCCTTCCATCACCCAGATGTGCACAAGCTTGCGCCACTGTAACCAATGCTACCCTATCAGGCACTATGCCACTCAACCTCATCTGAACAAACATATGTATAACTTCAATAGCCTGGGCTTCCTCAAGAAGGAAACCCATCATCATCGTCCAAGAAACAACATCATTAACAGCGATCTTTTTGAAAATCTCTCTTCCAATCGCAAGACTACCAAAGCTCAAGTACATACCCAATATTGAGTTTGTCACTGAGACATCTGAATCAAGCCCAATCTTGACTGAATAAGCATGTGCACTCTCACACAATCCAAGGTCACCACAACCAGCAGAAGCCTGAGCAATGCTAATCATAGTCACAACATTATGAACTGGTCCAAATGAAAACAGCAACCTCTTGAAAACCAGCAATGCTTCCTCAAACAGATCGTTGTGCACTAGACCAGAAATCAATGCATTCCAAGTAACTATACCAGGATCCCTCATTTCACCAAACAATGCCCAGGCCTTCGTAGGACGTCCACATTTCGCATAGGAATCAAGCAATGCGGTCCGAACAAAAGGATTGGATTCCAACAGGCTCTTCATAGCCCACCCATGGATGCACTCAGCAAGCACCAAGTTGCCCATCCCAGCAGCTGCTATTAAAGCACCAACCAATGTGAACGAGTTGGGGCTCACCCCCACCCTCATCATACCAACAAACAGCCTGACAGCCTCGCCAAACAACCCGCTCTTCGCATGCCGGTAGATTGCGGCCGAGCATGCGACCAAATCCCTAACAGGCATTTCATCGAACATTTGGCGAGGTCGCGCGCGAGCGGAACACCCACTTCCTCCTCCGAGCCGTTTCATCGAACACCTACCGCGCACACCATCTGAACCCTCCCCCAGTCCCCCACCGCCCACCACTCAATAGGTTATTCTCTAGACCCTGAAACGAAACTGTTTCAAGTGACAAAAGGTCGCGATTCGGGGATTACCTTCGGTGACGGTGCCGAAGGAGGAGAAGGCGTCCGTCAGCGACCGCTCGTCCGCGGACCACGACAACCCTACGCCCGCGCGCGCAATCGCGCGAGAGAGAAAGCGTAGCAAAGCAACAAGGTGAGAACCATGGAACAGAGTGGGGATTGGATTGCGGGGAAGGAAACGGAGGCGGGAGAGCAGAGGCTTTACCGGCGACGAAGAGCTTCGAGTTGGAGGGCGGCGTCGGTGGCGGTGGAGGATGCGGAGGAGGAGGGGGCGACTCGTCGGGTGGTGGATCGGCGGTGGCGGCGGCGGAGAGAGCGCGGCCGAGGTGGCGGTGGTGGTGGTGGCTGAGAGGAGCGAAGCGGAGGCGGGAGAGCAGCGCACGAGCCGCCATGGCGGCGGCGGAGACTGCAGCTGCGACGGCTGGGTTAACCGCGAGCACGGCGGCGCCGCGATACT
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| CDS seq | ATGGCGGCTCGTGCGCTGCTCTCCCGCCTCCGCTTCGCTCCTCTCAGCCACCACCACCACCGCCACCTCGGCCGCGCTCTCTCCGCCGCCGCCACCGCCGATCCACCACCCGACGAGTCGCCCCCTCCTCCTCCGCATCCTCCACCGCCACCGACGCCGCCCTCCAACTCGAAGCTCTTCGTCGCCGGGTTGTCGTGGTCCGCGGACGAGCGGTCGCTGACGGACGCCTTCTCCTCCTTCGGCACCGTCACCGAAGATGGTGTGCGCGGTAGGTGTTCGATGAAACGGCTCGGAGGAGGAAGTGGGTGTTCCGCTCGCGCGCGACCTCGCCAAATGTTCGATGAAATGCCTGTTAGGGATTTGGTCGCATGCTCGGCCGCAATCTACCGGCATGCGAAGAGCGGGTTGTTTGGCGAGGCTGTCAGGCTGTTTGTTGGTATGATGAGGGTGGGGGTGAGCCCCAACTCGTTCACATTGGTTGGTGCTTTAATAGCAGCTGCTGGGATGGGCAACTTGGTGCTTGCTGAGTGCATCCATGGGTGGGCTATGAAGAGCCTGTTGGAATCCAATCCTTTTGTTCGGACCGCATTGCTTGATTCCTATGCGAAATGTGGACGTCCTACGAAGGCCTGGGCATTGTTTGGTGAAATGAGGGATCCTGGTATAGTTACTTGGAATGCATTGATTTCTGGTCTAGTGCACAACGATCTGTTTGAGGAAGCATTGCTGGTTTTCAAGAGGTTGCTGTTTTCATTTGGACCAGTTCATAATGTTGTGACTATGATTAGCATTGCTCAGGCTTCTGCTGGTTGTGGTGACCTTGGATTGTGTGAGAGTGCACATGCTTATTCAGTCAAGATTGGGCTTGATTCAGATGTCTCAGTGACAAACTCAATATTGGGTATGTACTTGAGCTTTGGTAGTCTTGCGATTGGAAGAGAGATTTTCAAAAAGATCGCTGTTAATGATGTTGTTTCTTGGACGATGATGATGGGTTTCCTTCTTGAGGAAGCCCAGGCTATTGAAGTTATACATATGTTTGTTCAGATGAGGTTGAGTGGCATAGTGCCTGATAGGGTAGCATTGGTTACAGTGGCGCAAGCTTGTGCACATCTGGGTGATGGAAGGATAGGAAAGTTGGTTCATAACGAGATTGTAATCCGTGGGTTCAGTGGTGAGCTTCCTGCAGTTAACTCGTTAATCACAATGTATTCTAAATGTGAGGATTTAAGTTCTGCAAGACTGTTGTTTGATGGTACAATGGAGAAAAGCTTGGTTTCATGGACGGCAATGGTGTCAGCGTATATAGAAAATGGATATGCCCTAGAAGGGATGTATCTCTTTGCGAAGATGAGGCATGAAGGTTCCTTTATGATTGATTCTGTGACACTGGTCACCTTATTGCTTGCTTGCTATGAGGTTGCTAAGTTTGAACTATGTATTCAACTTCATGCATATTGTTACAAATCGGGTTTGTGTCTGTACAAACCTGTTCTTAATACCCTCATTGCAGTTTATGGTAAGTGTGGATATGCGACTTTAGCGCATAAAGCGTTTGATGAGATGATTTCTCGGAATGCTGTCTCATGGAATACTATGATTTTATCCTATGGTGTAAATGGCCAAGGAGAGAAAGCAGTATCACTTTTCAATGAAATGGAGAAATCTAGCGAGGATCAAGACAGTGTGACTTATTTGAACACATTGCTAGCATGTAGCCACTCTGGACTGGTGGATGATGGGATGCTCGTCTTTAGAAGAATGGTTAATGACAAGGGAATAATTCCATGCCCAGAGCATGTCGGATGCATAGTTGATATGTTGGCAAGAGCTGGCCGCTTGGAGGAAGCAGCAGGAGTGGCTAGCTTGACTCACAATAAATTAGGAGCAAATGCTTGGAAGGCTTTGATGGGAGGAGGGCATTTGCATGGTGACATGAAATTTACTAAAGTTGCTGCAGAGAAGGTGCTCACCACGGAATCATTTGATTATGGGCATGTTGTGTTACTTTCTAATGCTTATGCATCATCTGGCAAATATAGAGCTGCTGAATCTGTCAGATCCTGTTATGCAAAACGAATTACAAGGAAAACTTTAGGGCTTAGTTCCATTGAGATAGTGCCGTACAGCAGAAGATAG
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| Protein seq | MAARALLSRLRFAPLSHHHHRHLGRALSAAATADPPPDESPPPPPHPPPPPTPPSNSKLFVAGLSWSADERSLTDAFSSFGTVTEDGVRGRCSMKRLGGGSGCSARARPRQMFDEMPVRDLVACSAAIYRHAKSGLFGEAVRLFVGMMRVGVSPNSFTLVGALIAAAGMGNLVLAECIHGWAMKSLLESNPFVRTALLDSYAKCGRPTKAWALFGEMRDPGIVTWNALISGLVHNDLFEEALLVFKRLLFSFGPVHNVVTMISIAQASAGCGDLGLCESAHAYSVKIGLDSDVSVTNSILGMYLSFGSLAIGREIFKKIAVNDVVSWTMMMGFLLEEAQAIEVIHMFVQMRLSGIVPDRVALVTVAQACAHLGDGRIGKLVHNEIVIRGFSGELPAVNSLITMYSKCEDLSSARLLFDGTMEKSLVSWTAMVSAYIENGYALEGMYLFAKMRHEGSFMIDSVTLVTLLLACYEVAKFELCIQLHAYCYKSGLCLYKPVLNTLIAVYGKCGYATLAHKAFDEMISRNAVSWNTMILSYGVNGQGEKAVSLFNEMEKSSEDQDSVTYLNTLLACSHSGLVDDGMLVFRRMVNDKGIIPCPEHVGCIVDMLARAGRLEEAAGVASLTHNKLGANAWKALMGGGHLHGDMKFTKVAAEKVLTTESFDYGHVVLLSNAYASSGKYRAAESVRSCYAKRITRKTLGLSSIEIVPYSRR |
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| Function | Pentatricopeptide repeat-containing protein DOT4, chloroplastic [UniProtKB/Swiss-Prot:Q9SN39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0043980 | OsARC_01g0043980.02 | Chr01 | 40235809 | 40236333 | - | NAM | ||
| CDS seq | ATGCATATGCCATGGAATTATCTGGTGGAGGCATATTGGTGTTTGCCTGTGAGAATAATGTATGACAAAAACTCTGGAAGGTCAAGAGGTTTTGGGTTTGTGCACTTCTCAAACGAGTATGAAGCTAAGTGCGCCAAGGATGCTATGGATGGAAAGGTAATGCTAGGACGACCATTGCGGATAAGTTTTGCTCTTGACAAGGTCCGTGGTGCTCCAGTTGTTGTTCCACGACTTTCCACGGTGAGTTTAACGATTGACATGTTCATTACATTTCTGGAATGA
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| Protein seq | MHMPWNYLVEAYWCLPVRIMYDKNSGRSRGFGFVHFSNEYEAKCAKDAMDGKVMLGRPLRISFALDKVRGAPVVVPRLSTVSLTIDMFITFLE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0043980 | OsARC_01g0043980.01 | Chr01 | 40231978 | 40239830 | - | NAM | ||
| CDS seq | ATGGCGGCTCGTGCGCTGCTCTCCCGCCTCCGCTTCGCTCCTCTCAGCCACCACCACCACCGCCACCTCGGCCGCGCTCTCTCCGCCGCCGCCACCGCCGATCCACCACCCGACGAGTCGCCCCCTCCTCCTCCGCATCCTCCACCGCCACCGACGCCGCCCTCCAACTCGAAGCTCTTCGTCGCCGGGTTGTCGTGGTCCGCGGACGAGCGGTCGCTGACGGACGCCTTCTCCTCCTTCGGCACCGTCACCGAAGATGGTGTGCGCGGTAGGTGTTCGATGAAACGGCTCGGAGGAGGAAGTGGGTGTTCCGCTCGCGCGCGACCTCGCCAAATGTTCGATGAAATGCCTGTTAGGGATTTGGTCGCATGCTCGGCCGCAATCTACCGGCATGCGAAGAGCGGGTTGTTTGGCGAGGCTGTCAGGCTGTTTGTTGGTATGATGAGGGTGGGGGTGAGCCCCAACTCGTTCACATTGGTTGGTGCTTTAATAGCAGCTGCTGGGATGGGCAACTTGGTGCTTGCTGAGTGCATCCATGGGTGGGCTATGAAGAGCCTGTTGGAATCCAATCCTTTTGTTCGGACCGCATTGCTTGATTCCTATGCGAAATGTGGACGTCCTACGAAGGCCTGGGCATTGTTTGGTGAAATGAGGGATCCTGGTATAGTTACTTGGAATGCATTGATTTCTGGTCTAGTGCACAACGATCTGTTTGAGGAAGCATTGCTGGTTTTCAAGAGGTTGCTGTTTTCATTTGGACCAGTTCATAATGTTGTGACTATGATTAGCATTGCTCAGGCTTCTGCTGGTTGTGGTGACCTTGGATTGTGTGAGAGTGCACATGCTTATTCAGTCAAGATTGGGCTTGATTCAGATGTCTCAGTGACAAACTCAATATTGGGTATGTACTTGAGCTTTGGTAGTCTTGCGATTGGAAGAGAGATTTTCAAAAAGATCGCTGTTAATGATGTTGTTTCTTGGACGATGATGATGGGTTTCCTTCTTGAGGAAGCCCAGGCTATTGAAGTTATACATATGTTTGTTCAGATGAGGTTGAGTGGCATAGTGCCTGATAGGGTAGCATTGGTTACAGTGGCGCAAGCTTGTGCACATCTGGGTGATGGAAGGATAGGAAAGTTGGTTCATAACGAGATTGTAATCCGTGGGTTCAGTGGTGAGCTTCCTGCAGTTAACTCGTTAATCACAATGTATTCTAAATGTGAGGATTTAAGTTCTGCAAGACTGTTGTTTGATGGTACAATGGAGAAAAGCTTGGTTTCATGGACGGCAATGGTGTCAGCGTATATAGAAAATGGATATGCCCTAGAAGGGATGTATCTCTTTGCGAAGATGAGGCATGAAGGTTCCTTTATGATTGATTCTGTGACACTGGTCACCTTATTGCTTGCTTGCTATGAGGTTGCTAAGTTTGAACTATGTATTCAACTTCATGCATATTGTTACAAATCGGGTTTGTGTCTGTACAAACCTGTTCTTAATACCCTCATTGCAGTTTATGGTAAGTGTGGATATGCGACTTTAGCGCATAAAGCGTTTGATGAGATGATTTCTCGGAATGCTGTCTCATGGAATACTATGATTTTATCCTATGGTGTAAATGGCCAAGGAGAGAAAGCAGTATCACTTTTCAATGAAATGGAGAAATCTAGCGAGGATCAAGACAGTGTGACTTATTTGAACACATTGCTAGCATGTAGCCACTCTGGACTGGTGGATGATGGGATGCTCGTCTTTAGAAGAATGGTTAATGACAAGGGAATAATTCCATGCCCAGAGCATGTCGGATGCATAGTTGATATGTTGGCAAGAGCTGGCCGCTTGGAGGAAGCAGCAGGAGTGGCTAGCTTGACTCACAATAAATTAGGAGCAAATGCTTGGAAGGCTTTGATGGGAGGAGGGCATTTGCATGGTGACATGAAATTTACTAAAGTTGCTGCAGAGAAGGTGCTCACCACGGAATCATTTGATTATGGGCATGTTGTGTTACTTTCTAATGCTTATGCATCATCTGGCAAATATAGAGCTGCTGAATCTGTCAGATCCTGTTATGCAAAACGAATTACAAGGAAAACTTTAGGGCTTAGTTCCATTGAGATAGTGCCGTACAGCAGAAGATAG
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| Protein seq | MAARALLSRLRFAPLSHHHHRHLGRALSAAATADPPPDESPPPPPHPPPPPTPPSNSKLFVAGLSWSADERSLTDAFSSFGTVTEDGVRGRCSMKRLGGGSGCSARARPRQMFDEMPVRDLVACSAAIYRHAKSGLFGEAVRLFVGMMRVGVSPNSFTLVGALIAAAGMGNLVLAECIHGWAMKSLLESNPFVRTALLDSYAKCGRPTKAWALFGEMRDPGIVTWNALISGLVHNDLFEEALLVFKRLLFSFGPVHNVVTMISIAQASAGCGDLGLCESAHAYSVKIGLDSDVSVTNSILGMYLSFGSLAIGREIFKKIAVNDVVSWTMMMGFLLEEAQAIEVIHMFVQMRLSGIVPDRVALVTVAQACAHLGDGRIGKLVHNEIVIRGFSGELPAVNSLITMYSKCEDLSSARLLFDGTMEKSLVSWTAMVSAYIENGYALEGMYLFAKMRHEGSFMIDSVTLVTLLLACYEVAKFELCIQLHAYCYKSGLCLYKPVLNTLIAVYGKCGYATLAHKAFDEMISRNAVSWNTMILSYGVNGQGEKAVSLFNEMEKSSEDQDSVTYLNTLLACSHSGLVDDGMLVFRRMVNDKGIIPCPEHVGCIVDMLARAGRLEEAAGVASLTHNKLGANAWKALMGGGHLHGDMKFTKVAAEKVLTTESFDYGHVVLLSNAYASSGKYRAAESVRSCYAKRITRKTLGLSSIEIVPYSRR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0043980 | OsARC_01g0043980.03 | Chr01 | 40232241 | 40239833 | - | IsoSeq | ||
| CDS seq | AGTATCGCGGCGCCGCCGTGCTCGCGGTTAACCCAGCCGTCGCAGCTGCAGTCTCCGCCGCCGCCATGGCGGCTCGTGCGCTGCTCTCCCGCCTCCGCTTCGCTCCTCTCAGCCACCACCACCACCGCCACCTCGGCCGCGCTCTCTCCGCCGCCGCCACCGCCGATCCACCACCCGACGAGTCGCCCCCTCCTCCTCCGCATCCTCCACCGCCACCGACGCCGCCCTCCAACTCGAAGCTCTTCGTCGCCGGGTTGTCGTGGTCCGCGGACGAGCGGT
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| Protein seq | SIAAPPCSRLTQPSQLQSPPPPWRLVRCSPASASLLSATTTTATSAALSPPPPPPIHHPTSRPLLLRILHRHRRRPPTRSSSSPGCRGPRTSG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr01 | 40236142 | 40239389 | - | OsARC_01g0043980.01 | OsARC_01g0043980.03,OsARC_01g0043980.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.064285 | 0.071960 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0913400 | RBH | 0.366359 | 0.472847 | 0.442139 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g68524 | RBH | 0.198007 | 0.303526 | 0.090964 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0913400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0044590 | RBH | 0.080633 | 0.000000 | 0.938472 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0044140 | RBH | 0.000000 | 0.640244 | 0.454842 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0044520 | RBH | 0.252749 | 1.163447 | 1.493874 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0043950 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0043550 | RBH | 0.000000 | 1.510878 | 1.028652 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0656600 | RBH | 0.915509 | 2.693479 | 1.145394 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0043200 | RBH | 0.029030 | 0.048124 | 0.110931 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0658600 | RBH | 1.1709745 | 3.597262 | 6.1825685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0043530 | RBH | 0.024916 | 0.072729 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0043490 | RBH | 0.267224 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0043770 | RBH | 0.000000 | 1.433690 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0043730 | RBH | 0.342098 | 0.773407 | 0.352576 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0043540 | RBH | 0.141564 | 0.417043 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G043930 | RBH | 0.047124 | 0.401005 | 1.055078 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0043650 | RBH | 0.000000 | 2.376347 | 0.471845 |
