Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0041850 | OGI:01113400 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:38634147-38636207 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGTGAAGATTTTTCTTTTAACATTTCAACCACAAAAATTGATGTTCAAATACATAATTCAATTGTGCCTGTTGACTGATATTAGCATATAAAATTGACACGAAGTGTGTAGTTATTTCTATGCCAGCACCAGTTGATAAAGGGATGCAACAGAACAGATAATTCCCTTGTCTAATAATCTAATGTCCTTGTCTAATCATCTATGTATAAGAAGTACAGTTAATAGAATATCCAGCACATGAGGGGCTTTTCTTTTCTGGGCAACTTGTGAAAACACTTTCGGAAGAACATTTGGGACATGCAAAAAATGCAGTCAGTGTAGCTGGGATAACGTACCACTGCCTGCACATACTTGGTGTTCAGTAATCTCGAGCTCCACTGAACTGCACCCTGGGGTCTTCCCAACTCCATGGAGCGCCATCTTTCTCCTCATGCGTTCAGCCTGCTCCCACCTCTCCGACGAGGCCATGATATTTGACAGCAAGATGTACTCTGCATCGTTGGTTGACACACGACGGGAGTGCAATTGGTGGATCTCACTTGATACGAGTTCAGACATCTCTGCATCGCCATGCACCCTGCAAGCTCCGAGCAGGGAGCCCCAGATCACCTCATTGGGTTCAACAAGCATGTTCTTGACAATCTCATAAGCTTCCCTCAATCTTCCAGAACGGCCCAAGAGATCAACCAGGCAGCCGTAATGCTCTACTGCAGCAGCAACCCCGTAAATATCGAATTTGCTGAAGATTCTTAGTCCTTCATCTACAAATCCTCCGTGTGTGCAAGCTCCGAGTACGGCAAGAAGTGTGATCTCATTAGGCTTCTGCTCCGAACACTCCATCTTGGAGAACAACCGAATAGCCTCAATGCTCTGTCCATGGCTGGAAAGTGCAGAGATCATCGAGTTCCAGCATTCGGTGTTCCTCCATTGCATGTTGTCGAAGATATTTCGTGCGAAAGCGAGGTCACCGCACTTGGCGAACATGTCAACCAGGCCATTCATAACGAACTGGTTCTTCCGGATACGGTGCTGGATGATGAAATTGTGAACCTTTCTCGCTTGCTCTAGCGAACCGAGCTGTGCGCAGGCAGAGAGAACACCTGCCATGGTGAACTCGTCCGGCTTGATCTTGTCCTTTAGCATGGAGTGAAATGCTTCCAGTGCCTTCTCGCAGCATCCCATTTTGGCATACCCTGCTATTAGTGCGTTCCAGTTCACCAAGTTGCGCACGGGGATTTTGTCGAACACCGCTTGCGCTTCGTCGGCATTGCCAGCCTTGAAGTTCCCGGTGACCATCGACGACCACACAAACGCGTTCCGCGCAGGCATCTTGTTGAACAGCTCCCTCGCGGTCTCCATGTCCCCCGCGGCAACGTAGGCCTGCACGGCCACGGTCCACGTGACGACGTTCTGCATGCCCAGCGGCATGGCCTCAAACCACCGCCGCGTTTCCGCCATGTCGCCCTTCCCCGCGAACCCCCGGATCAGCGTTGCCCACGTGACGGGAGTCCGTGAGCCCATGCCGGCGAACAGCGCCTCCGCGCTCACCATGTCTCCCGCCGCCGCGTACCCGGCGAGCATGGCGTTGCACGTCACGGCGTTCCGGTCCAGCATTCCGTCGAACACCCTGCGCGCGTCGGCCAGGAGGCCGCACTTGCAGTACACGGACACCAGCGTCGTCCCCACGAGGCGGTCGTGGGCGTTGGCGGATTTCACGGCCTCCGCGTGGAGGGCCCTGCCGAGGACGGGATCCGCGCGGGAGGCGGTTGCCTTGAGGAGGACGATGACAAGGGGCAGGTGGTGAGTACGATGGGGCAGTAGTTTCGAGTAGATGATAGCGGCCTCCCGGAGGAAGGAGTTGGAGGCGTAGACCTTGGCGAGGTTGGCCCACATGTCTGGGTCACGGCATCCTCTCGTCAGGTAGAGAGCGTGGAGTTGCCTCGCTCGGCTAGCCGCCATGGCGAGCGCTCGTCCGCCCTAGCAGCGGCGGCGGCGGCGGCGGCTCGCGGGCTTATATAACGTCGGGGTGTCAAACAAAAATATTTCTGCTATTCTGGCAGT
More
|
||||||||||
| CDS seq | ATGGCGGCTAGCCGAGCGAGGCAACTCCACGCTCTCTACCTGACGAGAGGATGCCGTGACCCAGACATGTGGGCCAACCTCGCCAAGGTCTACGCCTCCAACTCCTTCCTCCGGGAGGCCGCTATCATCTACTCGAAACTACTGCCCCATCGTACTCACCACCTGCCCCTTGTCATCGTCCTCCTCAAGGCAACCGCCTCCCGCGCGGATCCCGTCCTCGGCAGGGCCCTCCACGCGGAGGCCGTGAAATCCGCCAACGCCCACGACCGCCTCGTGGGGACGACGCTGGTGTCCGTGTACTGCAAGTGCGGCCTCCTGGCCGACGCGCGCAGGGTGTTCGACGGAATGCTGGACCGGAACGCCGTGACGTGCAACGCCATGCTCGCCGGGTACGCGGCGGCGGGAGACATGGTGAGCGCGGAGGCGCTGTTCGCCGGCATGGGCTCACGGACTCCCGTCACGTGGGCAACGCTGATCCGGGGGTTCGCGGGGAAGGGCGACATGGCGGAAACGCGGCGGTGGTTTGAGGCCATGCCGCTGGGCATGCAGAACGTCGTCACGTGGACCGTGGCCGTGCAGGCCTACGTTGCCGCGGGGGACATGGAGACCGCGAGGGAGCTGTTCAACAAGATGCCTGCGCGGAACGCGTTTGTGTGGTCGTCGATGGTCACCGGGAACTTCAAGGCTGGCAATGCCGACGAAGCGCAAGCGGTGTTCGACAAAATCCCCGTGCGCAACTTGGTGAACTGGAACGCACTAATAGCAGGGTATGCCAAAATGGGATGCTGCGAGAAGGCACTGGAAGCATTTCACTCCATGCTAAAGGACAAGATCAAGCCGGACGAGTTCACCATGGCAGGTGTTCTCTCTGCCTGCGCACAGCTCGGTTCGCTAGAGCAAGCGAGAAAGGTTCACAATTTCATCATCCAGCACCGTATCCGGAAGAACCAGTTCGTTATGAATGGCCTGGTTGACATGTTCGCCAAGTGCGGTGACCTCGCTTTCGCACGAAATATCTTCGACAACATGCAATGGAGGAACACCGAATGCTGGAACTCGATGATCTCTGCACTTTCCAGCCATGGACAGAGCATTGAGGCTATTCGGTTGTTCTCCAAGATGGAGTGTTCGGAGCAGAAGCCTAATGAGATCACACTTCTTGCCGTACTCGGAGCTTGCACACACGGAGGATTTGTAGATGAAGGACTAAGAATCTTCAGCAAATTCGATATTTACGGGGTTGCTGCTGCAGTAGAGCATTACGGCTGCCTGGTTGATCTCTTGGGCCGTTCTGGAAGATTGAGGGAAGCTTATGAGATTGTCAAGAACATGCTTGTTGAACCCAATGAGGTGATCTGGGGCTCCCTGCTCGGAGCTTGCAGGGTGCATGGCGATGCAGAGATGTCTGAACTCGTATCAAGTGAGATCCACCAATTGCACTCCCGTCGTGTGTCAACCAACGATGCAGAGTACATCTTGCTGTCAAATATCATGGCCTCGTCGGAGAGGTGGGAGCAGGCTGAACGCATGAGGAGAAAGATGGCGCTCCATGGAGTTGGGAAGACCCCAGGGTGCAGTTCAGTGGAGCTCGAGATTACTGAACACCAAGTATGTGCAGGCAGTGGTACGTTATCCCAGCTACACTGA
More
|
||||||||||
| Protein seq | MAASRARQLHALYLTRGCRDPDMWANLAKVYASNSFLREAAIIYSKLLPHRTHHLPLVIVLLKATASRADPVLGRALHAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRNAVTCNAMLAGYAAAGDMVSAEALFAGMGSRTPVTWATLIRGFAGKGDMAETRRWFEAMPLGMQNVVTWTVAVQAYVAAGDMETARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFDKIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALSSHGQSIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKFDIYGVAAAVEHYGCLVDLLGRSGRLREAYEIVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQLHSRRVSTNDAEYILLSNIMASSERWEQAERMRRKMALHGVGKTPGCSSVELEITEHQVCAGSGTLSQLH |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At3g21470 [UniProtKB/Swiss-Prot:Q9LVF9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0041850 | OsARC_01g0041850.01 | Chr01 | 38634147 | 38636207 | - | NAM | ||
| CDS seq | ATGGCGGCTAGCCGAGCGAGGCAACTCCACGCTCTCTACCTGACGAGAGGATGCCGTGACCCAGACATGTGGGCCAACCTCGCCAAGGTCTACGCCTCCAACTCCTTCCTCCGGGAGGCCGCTATCATCTACTCGAAACTACTGCCCCATCGTACTCACCACCTGCCCCTTGTCATCGTCCTCCTCAAGGCAACCGCCTCCCGCGCGGATCCCGTCCTCGGCAGGGCCCTCCACGCGGAGGCCGTGAAATCCGCCAACGCCCACGACCGCCTCGTGGGGACGACGCTGGTGTCCGTGTACTGCAAGTGCGGCCTCCTGGCCGACGCGCGCAGGGTGTTCGACGGAATGCTGGACCGGAACGCCGTGACGTGCAACGCCATGCTCGCCGGGTACGCGGCGGCGGGAGACATGGTGAGCGCGGAGGCGCTGTTCGCCGGCATGGGCTCACGGACTCCCGTCACGTGGGCAACGCTGATCCGGGGGTTCGCGGGGAAGGGCGACATGGCGGAAACGCGGCGGTGGTTTGAGGCCATGCCGCTGGGCATGCAGAACGTCGTCACGTGGACCGTGGCCGTGCAGGCCTACGTTGCCGCGGGGGACATGGAGACCGCGAGGGAGCTGTTCAACAAGATGCCTGCGCGGAACGCGTTTGTGTGGTCGTCGATGGTCACCGGGAACTTCAAGGCTGGCAATGCCGACGAAGCGCAAGCGGTGTTCGACAAAATCCCCGTGCGCAACTTGGTGAACTGGAACGCACTAATAGCAGGGTATGCCAAAATGGGATGCTGCGAGAAGGCACTGGAAGCATTTCACTCCATGCTAAAGGACAAGATCAAGCCGGACGAGTTCACCATGGCAGGTGTTCTCTCTGCCTGCGCACAGCTCGGTTCGCTAGAGCAAGCGAGAAAGGTTCACAATTTCATCATCCAGCACCGTATCCGGAAGAACCAGTTCGTTATGAATGGCCTGGTTGACATGTTCGCCAAGTGCGGTGACCTCGCTTTCGCACGAAATATCTTCGACAACATGCAATGGAGGAACACCGAATGCTGGAACTCGATGATCTCTGCACTTTCCAGCCATGGACAGAGCATTGAGGCTATTCGGTTGTTCTCCAAGATGGAGTGTTCGGAGCAGAAGCCTAATGAGATCACACTTCTTGCCGTACTCGGAGCTTGCACACACGGAGGATTTGTAGATGAAGGACTAAGAATCTTCAGCAAATTCGATATTTACGGGGTTGCTGCTGCAGTAGAGCATTACGGCTGCCTGGTTGATCTCTTGGGCCGTTCTGGAAGATTGAGGGAAGCTTATGAGATTGTCAAGAACATGCTTGTTGAACCCAATGAGGTGATCTGGGGCTCCCTGCTCGGAGCTTGCAGGGTGCATGGCGATGCAGAGATGTCTGAACTCGTATCAAGTGAGATCCACCAATTGCACTCCCGTCGTGTGTCAACCAACGATGCAGAGTACATCTTGCTGTCAAATATCATGGCCTCGTCGGAGAGGTGGGAGCAGGCTGAACGCATGAGGAGAAAGATGGCGCTCCATGGAGTTGGGAAGACCCCAGGGTGCAGTTCAGTGGAGCTCGAGATTACTGAACACCAAGTATGTGCAGGCAGTGGTACGTTATCCCAGCTACACTGA
More
|
|||||||
| Protein seq | MAASRARQLHALYLTRGCRDPDMWANLAKVYASNSFLREAAIIYSKLLPHRTHHLPLVIVLLKATASRADPVLGRALHAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRNAVTCNAMLAGYAAAGDMVSAEALFAGMGSRTPVTWATLIRGFAGKGDMAETRRWFEAMPLGMQNVVTWTVAVQAYVAAGDMETARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFDKIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALSSHGQSIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKFDIYGVAAAVEHYGCLVDLLGRSGRLREAYEIVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQLHSRRVSTNDAEYILLSNIMASSERWEQAERMRRKMALHGVGKTPGCSSVELEITEHQVCAGSGTLSQLH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0880900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g65840 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0880900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0042480 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0042040 | RBH | 0.0 | 0.0 | 0.155824 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0042380 | RBH | 0.0 | 0.0 | 0.321251 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0019380 | SBH | 0.0 | 0.064915 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0041400 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0629000 | RBH | 0.2532875 | 0.5208455 | 0.217957 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041040 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0629500 | RBH | 0.2148355 | 0.4269905 | 1.7976155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0041410 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0041350 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0041600 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0041570 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0041420 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G041830 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0041520 | RBH | 0.0 | 0.0 | 0.381396 |
