Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0041460 | OGI:01112510 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:38365147-38368028 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCCAAACATATTACTCTTTATTATCTAAAAAAACAAGCATATTACTCCGGTCATACATAAGTGACATTTTAGATAATGACACAATCATCAATGCACTTGTTTTACAATATAGAACTTATACTACAACAAGTATAGCAAAGTTATAATATTTTGAAAATATTTTTGAGACGAGTCTAACCATATTACTTTTGAATGCTGAATTGAAATATTTAAACAGAAATTGACAATCAAGGTTTAAACATATTGGTTGTACGCATTTCAAAATGTTATTTATTTGTGACCGGAGGGAGTAGTACCCTAAACTGCCGCTACACCTTAATAACATTGCAGAATGCCAGAAAGAAAAAACCCTGAAGATCCAATTCTCACTAAAAGCATCGGAGGACACTTCATATCAATATATCATCACGACTGCCCTTCAGAATGCACACTTTGCTACTTCTTGAATCTTCTTGGTTTAAGCTATGTTGATAGTGTGACAGACGAGAAGAATTGAGTAGGCAGCTGTTTGATGACTCAGTATAGCTTGCACATAACCACGCACTTGGTATCAAAATGTGGGTTGGTACTTGGTTAGATACTACTCCTTGCTCTTCTAGAACCTTGAACGGCTACTGATACAAAATTACAGTCCTAGCACTAGACTACAACATTAACCAAACTGAAGAGGCAGTACATCTCACGTATGCTATATCTAGCCCAGGGCATGAGTGACTTGGGGGAAAACGACTGTAATGCTGGCAATGCGATTTCTACTCTGCATCTATAATGAACTGCATTTCTGAAATGATACTACAACAATAGGCCGCTAAAAGAAGAATAACTTATCAGGAATCCCGTAGCAAGGAGTTATTTGATGGATCCAAGAATACACTAATTTCCTCTGCAAAAAGAAGAAGAATATACTAATTTCAGTTTACTCCTAGAACCAACCACACCAAAAAGATTGACTTCACAAGTTTCTGCATATAGCCAAGGTGATCCAGGTACTCTGAGTTGGGCAAGTAAATTCATCTATTTAATGGCCAGTGTAGAAAGATTTCCATTTTCATATTTTTACCAGAAAGGATATGTTACAAAATTCTCTGAAAAAAAAACTAAAAAAATACCAAAACAAGTGAACGGCACAATCAGAGTGACAGGAACTAGCTATTTCTAACTAATATTTCAACTACCAACTCCTCGTTTTTATTGAATTTACATAGAGATTGTGATGAAGAAACATGGTCGGTACAGAATTTGAGTTTTACCTGATATTCTGCCCTTCGTTAAATTTAAGGATGAAGTCAGACAAAACACTGCTGTCGTTGCAAGAGTCCCTTGTGGATAACCATCTGTCATCAAGCTGAACTTTTACATCCCTGTGCTAGGAGAAAGCATAAGTTCATTTGCTATTAGGAGTGCTACCTACACTTCAAGATAGACTTGATAAAAGAAACTGTAGGTAAGCTCTGCAGCTCAGTAGGGCATTAAACCATCTATATGGCAACAAAGAATGAAGACATTAAGTACTTATAACAATGTAGGACAACCAGACATAAGATTTGAATATTCATGATTACTGAAAAAAGCATACCTCTTCAAGCTGAGAACTTCATAATTTTTCCGCAGGTAATCTGCATGCTTAACTAGAGCATCCTGGGCATAGTCCTTGCCAACAGTTCTAACTGCAGCTGTATTAAGCAAATTTTCCAATGAACCATGTTTCTTTAGAAGTTTCACTGCAGTTTTCCGACCAAAACCAGGAACAAGGTGCTGTATTCCTGGAATACCATCTGCTTCATCACCTATGAAGCACCCTGTGCAGAATAGCTTCGATGCATCAGTTAGCTAGATTTCCTAATAATGATAAAATTAACTTTACATTGTAGGATAATACATAAAATATAGACATATACTCACTGAGGCTCAAATCTGCGGTTGGGTCACACTTGTACTGTGCAACATAATGCCTCAGCGTATAAAAGGACCAACGGCCAATCTCAGGAATGGGCATAACTAACTGAACATCTTCAGATATCAGCTGCTTGAAGTCTTTATCTGGTGAGCCAATGACAACTCTAAAACCTTTCTGTAAAACTTGCTCTGTTAAGGTAGCCACTACATCATCTGCCTCATACCCATCGACTCTGACGACCTGAATTTGCCGTTTGCAGATTTGTTCAGCGTCAGAAACTCAGAGCTCTACCTAAGAAAACGTTGCCGATTTCTCGATTTTAGTAATCTGTATATAAAAGATCTGGTTCACCTACCGGAACATTGCACTCGCGAAGAACATCGATAACGCGCGAATCGGCGCCTGTACCAGGGCCACGAGGTCGGTGCGCCTTGTAGGACGGTAGCAGCCGCCGCCGGTACTCGTTCCCGCCCTCCCCGTCCAAAACCTAACACGAAGCAGAGATAATTTCATAAGTGACTAGCTGAGAGGAGCATGTAAGGACGATTCCTTCGTTGGGGTCTGGGAGTGCGTGCTCACGGCGACGACGGGGTCGCGGAGGCTGACGTGCGCGAAGAAGAGCGCGAGCCAGCGCGCGAAGGCGCCGAGGCTGCGCTGGGATCCGCGGAAGCAGAGAGGGTTGACGTCGAGGAAGAACACCCGAGGTTTCGCGGGCTTCGCGGGGGCGCCGTCCCTGCCCACCAGCTGCTTGCGGGAATGCCTCGCTGGAGGCGGCGGTGGGATGGAGACGGCGAAGGTGGAAGGGGAGGACGACGAGGATACGGAGGCGTACGGGGTCACGCGGAGGCGGAGCGAGCGAGGTCTACGGGGCGCCGCCGCCGCCGCCGATGACGACGACGCGACGACCGGAGCTACCGGCGCCGTGCTCACGGCGGGAGGTGGCATCGCGATGGCGCTCGGTTTGGTGGGAAGCGGAGATGGGGAT
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| CDS seq | ATGCCACCTCCCGCCGTGAGCACGGCGCCGGTAGCTCCGGTCGTCGCGTCGTCGTCATCGGCGGCGGCGGCGGCGCCCCGTAGACCTCGCTCGCTCCGCCTCCGCGTGACCCCGTACGCCTCCGTATCCTCGTCGTCCTCCCCTTCCACCTTCGCCGTCTCCATCCCACCGCCGCCTCCAGCGAGGCATTCCCGCAAGCAGCTGGTGGGCAGGGACGGCGCCCCCGCGAAGCCCGCGAAACCTCGGGTGTTCTTCCTCGACGTCAACCCTCTCTGCTTCCGCGGATCCCAGCGCAGCCTCGGCGCCTTCGCGCGCTGGCTCGCGCTCTTCTTCGCGCACGTCAGCCTCCGCGACCCCGTCGTCGCCGTTTTGGACGGGGAGGGCGGGAACGAGTACCGGCGGCGGCTGCTACCGTCCTACAAGGCGCACCGACCTCGTGGCCCTGGTACAGGCGCCGATTCGCGCGTTATCGATGTTCTTCGCGAGTGCAATGTTCCGGTCGTCAGAGTCGATGGGTATGAGGCAGATGATGTAGTGGCTACCTTAACAGAGCAAGTTTTACAGAAAGGTTTTAGAGTTGTCATTGGCTCACCAGATAAAGACTTCAAGCAGCTGATATCTGAAGATGTTCAGTTAGTTATGCCCATTCCTGAGATTGGCCGTTGGTCCTTTTATACGCTGAGGCATTATGTTGCACAGTACAAGTGTGACCCAACCGCAGATTTGAGCCTCAGGTGCTTCATAGGTGATGAAGCAGATGGTATTCCAGGAATACAGCACCTTGTTCCTGGTTTTGGTCGGAAAACTGCAGTGAAACTTCTAAAGAAACATGGTTCATTGGAAAATTTGCTTAATACAGCTGCAGTTAGAACTGTTGGCAAGGACTATGCCCAGGATGCTCTAGTTAAGCATGCAGATTACCTGCGGAAAAATTATGAAGTTCTCAGCTTGAAGAGGGATGTAAAAGTTCAGCTTGATGACAGATGGTTATCCACAAGGGACTCTTGCAACGACAGCAGTGTTTTGTCTGACTTCATCCTTAAATTTAACGAAGGGCAGAATATCAGAGGAAATTAG
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| Protein seq | MPPPAVSTAPVAPVVASSSSAAAAAPRRPRSLRLRVTPYASVSSSSSPSTFAVSIPPPPPARHSRKQLVGRDGAPAKPAKPRVFFLDVNPLCFRGSQRSLGAFARWLALFFAHVSLRDPVVAVLDGEGGNEYRRRLLPSYKAHRPRGPGTGADSRVIDVLRECNVPVVRVDGYEADDVVATLTEQVLQKGFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCDPTADLSLRCFIGDEADGIPGIQHLVPGFGRKTAVKLLKKHGSLENLLNTAAVRTVGKDYAQDALVKHADYLRKNYEVLSLKRDVKVQLDDRWLSTRDSCNDSSVLSDFILKFNEGQNIRGN |
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| Function | 5'-3' exonuclease [UniProtKB/Swiss-Prot:O67550] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0041460 | OsARC_01g0041460.01 | Chr01 | 38365147 | 38368028 | - | NAM | ||
| CDS seq | ATGCCACCTCCCGCCGTGAGCACGGCGCCGGTAGCTCCGGTCGTCGCGTCGTCGTCATCGGCGGCGGCGGCGGCGCCCCGTAGACCTCGCTCGCTCCGCCTCCGCGTGACCCCGTACGCCTCCGTATCCTCGTCGTCCTCCCCTTCCACCTTCGCCGTCTCCATCCCACCGCCGCCTCCAGCGAGGCATTCCCGCAAGCAGCTGGTGGGCAGGGACGGCGCCCCCGCGAAGCCCGCGAAACCTCGGGTGTTCTTCCTCGACGTCAACCCTCTCTGCTTCCGCGGATCCCAGCGCAGCCTCGGCGCCTTCGCGCGCTGGCTCGCGCTCTTCTTCGCGCACGTCAGCCTCCGCGACCCCGTCGTCGCCGTTTTGGACGGGGAGGGCGGGAACGAGTACCGGCGGCGGCTGCTACCGTCCTACAAGGCGCACCGACCTCGTGGCCCTGGTACAGGCGCCGATTCGCGCGTTATCGATGTTCTTCGCGAGTGCAATGTTCCGGTCGTCAGAGTCGATGGGTATGAGGCAGATGATGTAGTGGCTACCTTAACAGAGCAAGTTTTACAGAAAGGTTTTAGAGTTGTCATTGGCTCACCAGATAAAGACTTCAAGCAGCTGATATCTGAAGATGTTCAGTTAGTTATGCCCATTCCTGAGATTGGCCGTTGGTCCTTTTATACGCTGAGGCATTATGTTGCACAGTACAAGTGTGACCCAACCGCAGATTTGAGCCTCAGGTGCTTCATAGGTGATGAAGCAGATGGTATTCCAGGAATACAGCACCTTGTTCCTGGTTTTGGTCGGAAAACTGCAGTGAAACTTCTAAAGAAACATGGTTCATTGGAAAATTTGCTTAATACAGCTGCAGTTAGAACTGTTGGCAAGGACTATGCCCAGGATGCTCTAGTTAAGCATGCAGATTACCTGCGGAAAAATTATGAAGTTCTCAGCTTGAAGAGGGATGTAAAAGTTCAGCTTGATGACAGATGGTTATCCACAAGGGACTCTTGCAACGACAGCAGTGTTTTGTCTGACTTCATCCTTAAATTTAACGAAGGGCAGAATATCAGAGGAAATTAG
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| Protein seq | MPPPAVSTAPVAPVVASSSSAAAAAPRRPRSLRLRVTPYASVSSSSSPSTFAVSIPPPPPARHSRKQLVGRDGAPAKPAKPRVFFLDVNPLCFRGSQRSLGAFARWLALFFAHVSLRDPVVAVLDGEGGNEYRRRLLPSYKAHRPRGPGTGADSRVIDVLRECNVPVVRVDGYEADDVVATLTEQVLQKGFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCDPTADLSLRCFIGDEADGIPGIQHLVPGFGRKTAVKLLKKHGSLENLLNTAAVRTVGKDYAQDALVKHADYLRKNYEVLSLKRDVKVQLDDRWLSTRDSCNDSSVLSDFILKFNEGQNIRGN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0041460 | OsARC_01g0041460.02 | Chr01 | 38366168 | 38368028 | - | NAM | ||
| CDS seq | ATGCCACCTCCCGCCGTGAGCACGGCGCCGGTAGCTCCGGTCGTCGCGTCGTCGTCATCGGCGGCGGCGGCGGCGCCCCGTAGACCTCGCTCGCTCCGCCTCCGCGTGACCCCGTACGCCTCCGTATCCTCGTCGTCCTCCCCTTCCACCTTCGCCGTCTCCATCCCACCGCCGCCTCCAGCGAGGCATTCCCGCAAGCAGCTGGTGGGCAGGGACGGCGCCCCCGCGAAGCCCGCGAAACCTCGGGTGTTCTTCCTCGACGTCAACCCTCTCTGCTTCCGCGGATCCCAGCGCAGCCTCGGCGCCTTCGCGCGCTGGCTCGCGCTCTTCTTCGCGCACGTCAGCCTCCGCGACCCCGTCGTCGCCGTTTTGGACGGGGAGGGCGGGAACGAGTACCGGCGGCGGCTGCTACCGTCCTACAAGGCGCACCGACCTCGTGGCCCTGGTACAGGCGCCGATTCGCGCGTTATCGATGTTCTTCGCGAGTGCAATGTTCCGGTCGTCAGAGTCGATGGGTATGAGGCAGATGATGTAGTGGCTACCTTAACAGAGCAAGTTTTACAGAAAGGTTTTAGAGTTGTCATTGGCTCACCAGATAAAGACTTCAAGCAGCTGATATCTGAAGATGTTCAGTTAGTTATGCCCATTCCTGAGATTGGCCGTTGGTCCTTTTATACGCTGAGGCATTATGTTGCACAGTACAAGTGTGACCCAACCGCAGATTTGAGCCTCAGGTGCTTCATAGGTGATGAAGCAGATGGTATTCCAGGAATACAGCACCTTGTTCCTGGTTTTGGTCGGAAAACTGCAGTGAAACTTCTAAAGAAACATGGTTCATTGGAAAATTTGCTTAATACAGCTGCAGTTAGAACTGTTGGCAAGGACTATGCCCAGGATGCTCTAGTTAAGCATGCAGATTACCTGCGGAAAAATTATGAAGTTCTCAGCTTGAAGAGATGGTTTAATGCCCTACTGAGCTGCAGAGCTTACCTACAGTTTCTTTTATCAAGTCTATCTTGA
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| Protein seq | MPPPAVSTAPVAPVVASSSSAAAAAPRRPRSLRLRVTPYASVSSSSSPSTFAVSIPPPPPARHSRKQLVGRDGAPAKPAKPRVFFLDVNPLCFRGSQRSLGAFARWLALFFAHVSLRDPVVAVLDGEGGNEYRRRLLPSYKAHRPRGPGTGADSRVIDVLRECNVPVVRVDGYEADDVVATLTEQVLQKGFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCDPTADLSLRCFIGDEADGIPGIQHLVPGFGRKTAVKLLKKHGSLENLLNTAAVRTVGKDYAQDALVKHADYLRKNYEVLSLKRWFNALLSCRAYLQFLLSSLS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0041460 | OsARC_01g0041460.03 | Chr01 | 38366167 | 38368006 | - | NAM | ||
| CDS seq | ATGCCACCTCCCGCCGTGAGCACGGCGCCGGTAGCTCCGGTCGTCGCGTCGTCGTCATCGGCGGCGGCGGCGGCGCCCCGTAGACCTCGCTCGCTCCGCCTCCGCGTGACCCCGTACGCCTCCGTATCCTCGTCGTCCTCCCCTTCCACCTTCGCCGTCTCCATCCCACCGCCGCCTCCAGCGAGGCATTCCCGCAAGCAGCTGGTGGGCAGGGACGGCGCCCCCGCGAAGCCCGCGAAACCTCGGGTGTTCTTCCTCGACGTCAACCCTCTCTGCTTCCGCGGATCCCAGCGCAGCCTCGGCGCCTTCGCGCGCTGGCTCGCGCTCTTCTTCGCGCACGTCAGCCTCCGCGACCCCGTCGTCGCCGTTTTGGACGGGGAGGGCGGGAACGAGTACCGGCGGCGGCTGCTACCGTCCTACAAGGCGCACCGACCTCGTGGCCCTGGTACAGGCGCCGATTCGCGCGTTATCGATGTTCTTCGCGAGTGCAATGTTCCGGTCGTCAGAGTCGATGGGTATGAGGCAGATGATGTAGTGGCTACCTTAACAGAGCAAGTTTTACAGAAAGGTTTTAGAGTTGTCATTGGCTCACCAGATAAAGACTTCAAGCAGCTGATATCTGAAGATGTTCAGTTAGTTATGCCCATTCCTGAGATTGGCCGTTGGTCCTTTTATACGCTGAGGCATTATGTTGCACAGTACAAGTGTGACCCAACCGCAGATTTGAGCCTCACTATTCTGCACAGGGTGCTTCATAGGTGA
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| Protein seq | MPPPAVSTAPVAPVVASSSSAAAAAPRRPRSLRLRVTPYASVSSSSSPSTFAVSIPPPPPARHSRKQLVGRDGAPAKPAKPRVFFLDVNPLCFRGSQRSLGAFARWLALFFAHVSLRDPVVAVLDGEGGNEYRRRLLPSYKAHRPRGPGTGADSRVIDVLRECNVPVVRVDGYEADDVVATLTEQVLQKGFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCDPTADLSLTILHRVLHR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 38366945 | 38367049 | - | OsARC_01g0041460.03 | OsARC_01g0041460.01,OsARC_01g0041460.02,OsARC_01g0041460.03 | All |
| A3 | Chr01 | 38366507 | 38366723 | - | OsARC_01g0041460.02 | OsARC_01g0041460.02,OsARC_01g0041460.01,OsARC_01g0041460.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.343782 | 0.059861 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0874800 | RBH | 1.935129 | 1.613265 | 0.912793 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g65400 | RBH | 1.220987 | 0.940269 | 0.234774 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0874800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0042070 | RBH | 1.443625 | 0.0 | 1.410601 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0041650 | RBH | 0.559267 | 0.000000 | 1.203895 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0041990 | RBH | 2.926915 | 4.062847 | 5.583885 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0041030 | RBH | 12.674045 | 4.150359 | 4.401285 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0623900 | RBH | 10.699376 | 6.4511665 | 2.2821085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0040670 | RBH | 0.858304 | 0.000000 | 0.749107 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0624600 | RBH | 12.7829115 | 4.7997035 | 8.692276 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0041030 | RBH | 0.377435 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040980 | RBH | 0.546455 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0041210 | RBH | 7.025312 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0041180 | RBH | 2.100325 | 0.364358 | 1.717875 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0041040 | RBH | 0.545842 | 1.947970 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G041460 | RBH | 0.568732 | 1.091993 | 1.415162 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0041120 | RBH | 5.055589 | 4.331222 | 4.176079 |
