Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0037150 | OGI:01103810 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:34957068-34960152 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCACCACCAGCAGCTCAAACCGGGCGAGGCCGCCTCGCTCCCGCGCCACCTCCTCGAGGCCCACGTCGTCGCGCTCGTCCGCCGATGCTGCCCGGGCCTCCTCGCGCTCCGCGCCGCACACGCGCGCCTCATCAGGCTCCGCCTCCCTCGCCTCACAGCCGCCTTCGCGCTCTCCAAGCTCCTCGCCTCCTCCTCCTCCTCCTCCTCCTCCTGCGGCGCCGCGCCATCCTACGCCCGCAACCTGTTCGACCAAATCCCCGAGCCGACCGCCTTCTGCTACAACTCCCTCATCCGCGCGCTCTCCTCCGCCGCCGGCGCCACCCCGGCCGCGGACACCGTCCTGGTCTACCGCCGAATGCTGCGCGCCGGGTCCCCGCTCCCCAACTCCTTCACGCTCGCGTTCGCGCTCAAGGCGTGCTCCGTCGTGCCGGCTCTCGGGGAGGGCCGGCAGCTGCATTCGCAGGCTTTCCGCCGGGGGCTTGAACCGAGCCCCTACGTGCAGACCGGGCTGCTTAACCTCTATGCCAAGTGCGAGGAGGTTGCGCTCGCCAGGACAGTGTTCGATGGCATGGTTGGGGACAAGAATTTGGCCGCGTGGAGTGCCATGATCGGCGGGTACTCCAGGGTGGGGATGGTTAACGAGGCTTTGGGGCTGTTCCGAGAGATGCAGGCAGCAGATGTGAACCCGGATGAGGTCACCATGGTTAGTGTCATTTCGGCATGCGCCAAGGCAGGGGCGCTTGATTTGGGGAGATGGGTGCATGCTTTTATCGATAGGAAAGGTATCACAGTCGATCTTGAGCTGAGCACAGCATTAATTGATATGTATGCAAAGTGTGGGTTGATAGAGCGGGCAAAGGGAGTGTTTGATGCAATGGCGGAGAGAGATACAAAGGCATGGAGTGCAATGATCGTTGGATTGGCGATACATGGTCTTGTAGAGGTTGCCTTGAAGCTTTTCTCAAGAATGCTAGAGCTTAAGGTAAAAAGATCGTTTTACTGATGTATCTGTAGTGACTGTTAATTGGTTTTGGTGATGATTTTTTCATATACATTTACTTGGACGTGAAAATGTAAAACCCATTAAATATGGGTGTCAAAAGAAACTAATTTATATTCGCAATGATGTAGTTCCTTAAAATTCATGTTCTTTGTTTAGCATATATTTTGTCTTTTGTACCATGCTACCATAAAACTTAGCTCATGGGTGCAAAATTTGTTGGTTCCATACATGATATCTTCTGGGATAGTGACATTGCTACATGAAGGTTTGAAATAGGGAGGGTTTTGCATTCGCGAAAAATAGGGAGGGTTTCTACATTGTCCTCTATGTATTAGTTCACATGTTCAACTTAGTTTCCAACAAAATGGTAGAATTCATGCAGTCTTTACAAATATATGGTAAGTCTATAACCATTCTAATAGCTCTAATTAAATTCTTGTAAACTGCAAATATGTCAGGTGAGGCCTAACAATGTCACCTTTATAGGTGTGTTGTCAGCCTGTGCTCACAGTGGGTTAGTGAATGAAGGCCGACGATATTGGTCTACTATGCAAGAATTGGGTATCAAACCTTCAATGGAGAACTATGGTTGCATGGTTGACCTTTTCTGTCGTTCTAGCCTTTTGGATGAAGCATATTCATTTGTTACTGGCATGGCTATCCCTCCAAATTCAGTAATTTGGAGGACTCTTCTTGTTGCCAGTAAGAACTCAAATAGATTTGATATAGTGCAATCAGCATCAAAGAAGCTCCTTGAGTTAGAACCTTGCAATCCAGAAAACTATGTTCTACTCTCAAATTTGTACGCATCGAATTCCCAGTGGGATAGAGTAAGCTATATGAGGAAAAAGATGAAGGAAAACAATGTTAATGTTGTTGCTGGCTGTAGTTCGATTGAAATTAATGGTTACCTTCACAAGTTTGTGGTGAGTGATGATTCACACCCTGAAATAAAGGAGATAAGACTGTTACTGAGGGAAATAGCTGACCGTGTGGTACGTGCTGGCCACAAGCCTTGGACTGCAGCCGTGCTTCATGATGTTGGTGAAGAGGAAAAAGAAGTTGCACTTTGTGAGCACAGTGAAAGGTTAGCCATTGCATATGGTTTGTTGAAGACAAAAGCGCCTCACGTCATTCGGGTGGTAAAGAATTTGAGATTCTGTCCAGATTGCCATGAAGTAGCAAAAATAGTAAGCAAGTCATATGATAGAGAAATCATTGTTAGGGACCGTGTTCGTTTCCATAGATTTGTTGAGGGAAGTTGTTCTTGCAAGGACTTTTGGTGATTCCTCAACCGATTGAATATTGTCCCACAGCTGGGGGTGAGGGATGTGGCGTTGAAACTCTTTGGAGTCCATCACCAAACAATAATGACTACTGATCACTGAGCATAATTTGGTATCCAGATAAAAAGGAATCCTGGAACTGACTGGACCCTCTTGCCCTGATACAAGTATACAACCTCTCAAGGTATTGAACTCCACTTGATTTTACTTTGTTTTTTATGCAATGTTCGTTGTCTTAGTGCTGCTATGAACGGGAAAGAAATCATATTAGTGATGGAGTAGATGTTCTATACAACCAACAGAACCTAAAAGGAGAAGGCTACTTTCCTGCTATTGTTTGTTAAAACGTGCCTATCATGGTTTGTTGTCCATACATTAATAGCAACATTGGTTGCATTATGCATTACACAACTTATGCAAGTTGGTCATTTTAAACACTTAATTTAGTTGGATACGTACGCAATTCATTGTTTGGTTAGTGTTTGTTTGTTGCTTTATGCCAAGTAGACGTCACGGCAAAAGCATTAACATAGCAGTTCAAAACATTAACATAGCATTGCCACTAATCACATAGACATGGACCACATGGTGCATCCAAAAGGTAAAAAGATCGTTCAGAGCCTCAGAGCCAGAGGTCGGAACTGTGGAATGTCATGCATATTTACGTTATCCACGTATTGGACCATATCTTTTTTTGTTTCAGGCATGGTTCATGGCTTCCCGCTCTAACTGGTAATGCAACTACAATGTCAATTGTTGGCGTCTACTGCACAGCAAGACAGATTTTCCGTTAA
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| CDS seq | ATGCACCACCAGCAGCTCAAACCGGGCGAGGCCGCCTCGCTCCCGCGCCACCTCCTCGAGGCCCACGTCGTCGCGCTCGTCCGCCGATGCTGCCCGGGCCTCCTCGCGCTCCGCGCCGCACACGCGCGCCTCATCAGGCTCCGCCTCCCTCGCCTCACAGCCGCCTTCGCGCTCTCCAAGCTCCTCGCCTCCTCCTCCTCCTCCTCCTCCTCCTGCGGCGCCGCGCCATCCTACGCCCGCAACCTGTTCGACCAAATCCCCGAGCCGACCGCCTTCTGCTACAACTCCCTCATCCGCGCGCTCTCCTCCGCCGCCGGCGCCACCCCGGCCGCGGACACCGTCCTGGTCTACCGCCGAATGCTGCGCGCCGGGTCCCCGCTCCCCAACTCCTTCACGCTCGCGTTCGCGCTCAAGGCGTGCTCCGTCGTGCCGGCTCTCGGGGAGGGCCGGCAGCTGCATTCGCAGGCTTTCCGCCGGGGGCTTGAACCGAGCCCCTACGTGCAGACCGGGCTGCTTAACCTCTATGCCAAGTGCGAGGAGGTTGCGCTCGCCAGGACAGTGTTCGATGGCATGGTTGGGGACAAGAATTTGGCCGCGTGGAGTGCCATGATCGGCGGGTACTCCAGGGTGGGGATGGTTAACGAGGCTTTGGGGCTGTTCCGAGAGATGCAGGCAGCAGATGTGAACCCGGATGAGGTCACCATGGTTAGTGTCATTTCGGCATGCGCCAAGGCAGGGGCGCTTGATTTGGGGAGATGGGTGCATGCTTTTATCGATAGGAAAGGTATCACAGTCGATCTTGAGCTGAGCACAGCATTAATTGATATGTATGCAAAGTGTGGGTTGATAGAGCGGGCAAAGGGAGTGTTTGATGCAATGGCGGAGAGAGATACAAAGGCATGGAGTGCAATGATCGTTGGATTGGCGATACATGGTCTTGTAGAGGTTGCCTTGAAGCTTTTCTCAAGAATGCTAGAGCTTAAGGTGAGGCCTAACAATGTCACCTTTATAGGTGTGTTGTCAGCCTGTGCTCACAGTGGGTTAGTGAATGAAGGCCGACGATATTGGTCTACTATGCAAGAATTGGGTATCAAACCTTCAATGGAGAACTATGGTTGCATGGTTGACCTTTTCTGTCGTTCTAGCCTTTTGGATGAAGCATATTCATTTGTTACTGGCATGGCTATCCCTCCAAATTCAGTAATTTGGAGGACTCTTCTTGTTGCCAGTAAGAACTCAAATAGATTTGATATAGTGCAATCAGCATCAAAGAAGCTCCTTGAGTTAGAACCTTGCAATCCAGAAAACTATGTTCTACTCTCAAATTTGTACGCATCGAATTCCCAGTGGGATAGAGTAAGCTATATGAGGAAAAAGATGAAGGAAAACAATGTTAATGTTGTTGCTGGCTGTAGTTCGATTGAAATTAATGGTTACCTTCACAAGTTTGTGGTGAGTGATGATTCACACCCTGAAATAAAGGAGATAAGACTGCATGGTTCATGGCTTCCCGCTCTAACTGGTAATGCAACTACAATGTCAATTGTTGGCGTCTACTGCACAGCAAGACAGATTTTCCGTTAA
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| Protein seq | MHHQQLKPGEAASLPRHLLEAHVVALVRRCCPGLLALRAAHARLIRLRLPRLTAAFALSKLLASSSSSSSSCGAAPSYARNLFDQIPEPTAFCYNSLIRALSSAAGATPAADTVLVYRRMLRAGSPLPNSFTLAFALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLELEPCNPENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGYLHKFVVSDDSHPEIKEIRLHGSWLPALTGNATTMSIVGVYCTARQIFR |
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| Function | Pentatricopeptide repeat-containing protein At2g02980, chloroplastic [UniProtKB/Swiss-Prot:Q8LK93] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0037150 | OsARC_01g0037150.01 | Chr01 | 34957068 | 34960152 | + | NAM | ||
| CDS seq | ATGCACCACCAGCAGCTCAAACCGGGCGAGGCCGCCTCGCTCCCGCGCCACCTCCTCGAGGCCCACGTCGTCGCGCTCGTCCGCCGATGCTGCCCGGGCCTCCTCGCGCTCCGCGCCGCACACGCGCGCCTCATCAGGCTCCGCCTCCCTCGCCTCACAGCCGCCTTCGCGCTCTCCAAGCTCCTCGCCTCCTCCTCCTCCTCCTCCTCCTCCTGCGGCGCCGCGCCATCCTACGCCCGCAACCTGTTCGACCAAATCCCCGAGCCGACCGCCTTCTGCTACAACTCCCTCATCCGCGCGCTCTCCTCCGCCGCCGGCGCCACCCCGGCCGCGGACACCGTCCTGGTCTACCGCCGAATGCTGCGCGCCGGGTCCCCGCTCCCCAACTCCTTCACGCTCGCGTTCGCGCTCAAGGCGTGCTCCGTCGTGCCGGCTCTCGGGGAGGGCCGGCAGCTGCATTCGCAGGCTTTCCGCCGGGGGCTTGAACCGAGCCCCTACGTGCAGACCGGGCTGCTTAACCTCTATGCCAAGTGCGAGGAGGTTGCGCTCGCCAGGACAGTGTTCGATGGCATGGTTGGGGACAAGAATTTGGCCGCGTGGAGTGCCATGATCGGCGGGTACTCCAGGGTGGGGATGGTTAACGAGGCTTTGGGGCTGTTCCGAGAGATGCAGGCAGCAGATGTGAACCCGGATGAGGTCACCATGGTTAGTGTCATTTCGGCATGCGCCAAGGCAGGGGCGCTTGATTTGGGGAGATGGGTGCATGCTTTTATCGATAGGAAAGGTATCACAGTCGATCTTGAGCTGAGCACAGCATTAATTGATATGTATGCAAAGTGTGGGTTGATAGAGCGGGCAAAGGGAGTGTTTGATGCAATGGCGGAGAGAGATACAAAGGCATGGAGTGCAATGATCGTTGGATTGGCGATACATGGTCTTGTAGAGGTTGCCTTGAAGCTTTTCTCAAGAATGCTAGAGCTTAAGGTGAGGCCTAACAATGTCACCTTTATAGGTGTGTTGTCAGCCTGTGCTCACAGTGGGTTAGTGAATGAAGGCCGACGATATTGGTCTACTATGCAAGAATTGGGTATCAAACCTTCAATGGAGAACTATGGTTGCATGGTTGACCTTTTCTGTCGTTCTAGCCTTTTGGATGAAGCATATTCATTTGTTACTGGCATGGCTATCCCTCCAAATTCAGTAATTTGGAGGACTCTTCTTGTTGCCAGTAAGAACTCAAATAGATTTGATATAGTGCAATCAGCATCAAAGAAGCTCCTTGAGTTAGAACCTTGCAATCCAGAAAACTATGTTCTACTCTCAAATTTGTACGCATCGAATTCCCAGTGGGATAGAGTAAGCTATATGAGGAAAAAGATGAAGGAAAACAATGTTAATGTTGTTGCTGGCTGTAGTTCGATTGAAATTAATGGTTACCTTCACAAGTTTGTGGTGAGTGATGATTCACACCCTGAAATAAAGGAGATAAGACTGCATGGTTCATGGCTTCCCGCTCTAACTGGTAATGCAACTACAATGTCAATTGTTGGCGTCTACTGCACAGCAAGACAGATTTTCCGTTAA
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| Protein seq | MHHQQLKPGEAASLPRHLLEAHVVALVRRCCPGLLALRAAHARLIRLRLPRLTAAFALSKLLASSSSSSSSCGAAPSYARNLFDQIPEPTAFCYNSLIRALSSAAGATPAADTVLVYRRMLRAGSPLPNSFTLAFALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLELEPCNPENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGYLHKFVVSDDSHPEIKEIRLHGSWLPALTGNATTMSIVGVYCTARQIFR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0814300 | RBH | 0.443782 | 0.101284 | 0.241390 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g59890 | RBH | 0.299624 | 0.068012 | 0.062038 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0814300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0037900 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0037340 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0037750 | RBH | 0.0 | 0.000000 | 0.417992 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018500 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0036860 | RBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0573300 | RBH | 0.4506335 | 0.741234 | 0.475286 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0036540 | RBH | 0.0 | 0.092075 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0569400 | RBH | 0.7658795 | 1.0492035 | 3.9425845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0036740 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0036800 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037040 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037100 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0036870 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G037390 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037080 | RBH | 0.0 | 0.000000 | 0.000000 |
