Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0033530 | OGI:01096030 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:32191112-32197786 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CACGAAAATATCTTTTAAAAGGGGAATAAATTTTCCTCATTTCCTGTGTTATCTTGTGCATCTTGCACATATTTGATGTGAGGCCAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCCCTTGTTACAGTTACAAGGGCAGAAATGATGAGAATTAGCGTAAAAGGATAAACCGATCGCCAGAGAAGGCAACGTAAGTGGAGAGCGAATCAAGTACCTAAATCGCTAAACCCCATCCACACTCTATTCTGTACAATGGTTTGGAAAGGGACGTTGCTCTATCGCCGTACAGAGAAGCTATGCTGCTATACATGGAACCGAGCGCTCAAAAACAACATACTGTATGCTTCATCATAAGCAAACTAGTTCTCAGCTCTGCATTAATTGCCTTTCACGGTAGATTTCCCCAAGCTGCTGATATAAGAATTTCTGCTCCTCAAAGGTTAGATTTCTTAGAATCTGGATGACAAAAGATCGGAAATGCATAAGAATCACACAAGACAATAGTAAACAGGCTCAAATGAAGCATGGTCCTGACCTGTTCCAAGATTAGCTCAACAGAGTAGTTTTGGGGCGATATGAATGATTGGTGATATATGTATGCAAAAACTGCCATAACCATCTGGGGAAAATGAACAGGAACAAGTTTAGCAACTTGCAACATGAAAGCTTGTTAGGATGATAAAAAATAATCATGCATGTCTAATACTGACCAGAATAAATGAATGTGATGTTAGCATCAAACATCTATTTCGGCTTTTCTATGTATATAAGTGACAACTTTGTCATCTTGAACATTTCCATGTCAAATTTGAATGTTCTAAAGCCAGAAAATGAGAAAACTACATGTGGAAGAATATTGTGTAATGTTAAAAAAATAAGAGAGAAATTAAAGGGCAATCATAAGTGCAATGTAGAGAAGTTGAAGTGGGCGAGCGGCAGATTCACAACCAGCACCATCACTAGTATTTCTTTTAAAAGGAGTAAAGATTCTACAGAAGCTATTTTTAAATTCTATTGTTAATACTCGGTATAAAGGACTTATTTGCCATGTACTTGCTTTCTATTAACATTAGTCAGAATAACAGTAAGGTGAAGGAAAATAGGGCTTAAAACTTTGGCACATCTAGCTAGCTCAGAGGGGAAATTCGTAACACAGGGAAATACAAGAAAGCTAGCCAAAAACAACTTGCCACAGTGGAGTTCACAGGCAAATAACTTGACAACAGGCCCCTAACAAATTTCATATAGCTAAAATATGTATATAGAAACACATATCGCTTTCATATGTATGTATATTATATGGGCAGTGACATTTTCTTATAATTAGAATATTCTTCGAGATTACTTACCTGACAATCCATTCGGTCAGTAATCCCACCATGCCCAGGTATGCTGTCTCCAAAATCCTACCACATCAAAAGAGTGATCAACAGAAATAAAAACAGTACAGTTTACATACTTCAAGAAGTAATCCCGAGGAAGCAAAAGGAGGCACTGCTTACCTTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAAACCTCCAAAAGGTGCTATTATTGATGCAAACAAACCTAGTGCTAAAGCATGCCACTGCACAGGCAAAAGAACAACTTCCTTCCAAGGGAACTGTCAACAATACATGTAATAACTTATTAACTTTAGCCAAAAACATCCATTGCTTGGAAAACATGATAAAAAACAAAATTCAAACGAAAAACAAAAACAGATTAATATATACAGTAGGGGGCTCCCCTACTGTTTTCCAGTGGAAAAAAGAACAACTAAAACAGATGACTCATCATGGTCAGGTATCATTAATTCATAAAACAAGGAAATTGAATGGAGTTTCAAAGAAAGTAAATGTGTTGCTTAAGTAGAGTTCATGCAAAGGACATGATTATGGTTGTCTCGCCTTTTTCAAGGACTAAAAAGGGGATAAACTGCATTACTCATTCAAGCATTCATGTGATCACCTGGCATCTTTTTGGTCTCTTATAGACTTTCTACTTGTTCTACATCATTCTTCTTGTATAACGAGAAAGCGGTAATTATTCTGCTGAATGATATGACGAATTTACAGTGCGATAACTAGTGCACAAAATAGTATTAGATAGAAAACCCATTACTTTTTTGAAAGAACAAAGAATATCCCAATAATTCTTATTCCTAAAACTTAGAATACAAAGGCTGGTGCTTTTTCAAGTATAACAGGACGCAGCATCTTGACTTGGAACAAGGAACTTTGCTCCTCTTGTGATTTCAACGGAATTATAAACAAATCAACTAACTCAATTCCATGTTCCCAAGTTTTCCGGTCTATAACCCAAAAAAAAATATCAGTATGATAATGGGTATGAGAACTGAAAACTTTCCTTGGCCACATTGATAATATTCATGGTTAGGCTTTACCTTAGGAACTTAACCTAGAGGGGTAACGTAAACAACCTATAACAGCGAAAGTAAAATAAATAAATTGAACAGAATAATGTTCAATGTTCTTACCCCCTTTGGCACCCATTCTCCCAAAGAATAATGTTCTGGCTTAAACATAGGACCAGGGTCACAACAAAGCCACCCTGTCGACAGGTCCTGAAATCATTTGCGTGATAAATATAAGAAAAGAATCACAGTAGCAAATTGTGTAGACAACTCACAATCACATTCCAAAGGAAATGATATCTCACTTTTCTTGGGCATGTCAACCATTGGAAACGGCCCATTACATTTGCTAACTGCCAAAAAAAAAGGGAGTGAAAAACAGTGTCAAATATAACTAGAAATATAATGTCCAGATATCATCTTTTGCATGAAAAACTGAAATGAATTATTATTTAAAGCTACCCCTTGAAGTGGCATAGTAGTCTTGCGTGAAAATAAACCATGCTAACTGACATAGACTAGCATAGTTAGAGAACTACAACAACAATTAACAGAAGCTTTCATCTCACCACAAAAGCAGATATGATAGTTGTCACAGATGCACCAATAAAACCTTCCCAAGTTTTCTTTGGAGATAACTTGATCAGAGGTGTTCTCCCAAGAAAGAACCCAAATAGATAGGCAGCAATGTCGTTAATCACAATGAGAGAAGCAGGCAACAGAAACCTGTGTAAGTAGCATTACAAAGGAATTATATGGAGTTTGTCAAATGGTGTCTATAATGTAATCTGTTTCTAGATAAATAGCATGCACATAATATGACAAGTTCTCTACAATCTACAGTACATCATTTACTGATGTGTGGATGACATTGGATAGTTCGACCCAAAAAAAGAACTCTACCTGCTCATAATTGGTACGGTGCAAAAAGGAAATAGCAAGGCACAAACATACTGTGTATGACTGTTTCATTTTTGCAAATGGTGCTCCTAAGATTTTCTGCTTTTTCCCTGATGGAGTACTGAGCATCCCAAAATTGGTAGGTCCATGGTGCAAACAGATATATAAATAGGTCAAATATGGCTGGCCCAGTGACTATATCATTGTTACAGTTAATATTCCTTTTAAGTTGAAGAGGATCAGGGTAAATTGTTTTTTGCAGCTGCCAGACAAGTTGGGCAGCATGATGTTACTACTGTAGAATTCTGCAAAGTTAAGCATAGAGCACAGAGGATTTAGAGTCTCAGAAAATTTTTGTGGTGTTTTTTGTTTAACTTCTATACATGAGGAAACTTCTGAATGATTAATTACCTAATAAAAAACATGTTAGAGTCACTATTAAATTAAAATTGCTACAAGAAATCATGCATCTAATTTTTTTTTAACACAGAGGTGTTAGCAAGGAAATATATGGCTTACCAGAACATCCCTTCAAATATATTTGCCACGGTAAAAGAAGATTGTGCAAAAACCGTTAAAAGGATCATGTGCGTCCAGGCATATTGTTTGAACTGATACTTGTATGTCTTTTTCTTCAGAGTCAAAATAAACCAGACAAATCCTGGATCATGGCAGTTTACATTATACTTTTTGCCAGACAAGAACTAGATATCGCCAAGATGACAGATTACCAAAGTAGGACTGTATATAGCATAACTAATCCAATCGAGTGAATGGAAAAAATTGTCAAAGAAACAAGCATGTGCACATTAGATCCTTTTTGAACACTTAGGCAGGTCTGCAATGTTATACAAGCACTGAGCTCTGAACATTTGAAAAGGGCTCATGGGATGATGCCAAGTCCAAAACAATTGAAATGAAGTGGATTCTCTGCCAACCGGTTCAAATCAATAAAACAAAGAGGAACCAAGAAGTTCGCATGAATACTTGTTTTAATGCCAGAGATAAAACTATACTCAAGACAACTAAAAAGATGAAAACTAAATAATGAATGCAGAAACTGTTCTCTAGATAATATTCAGTTGGTGTTTTAATGCCAGTGCTATAGATGAAATGATACCACTCAAGACAACTGAAATCATGAAAAACTAAATAATGACTGCGGAAGTTGGCTGTGGGATTCTTTAGCAGCGCAGGGGGCCATAGATGATATGGGTACAATGTAGTTAGTTTGGACAAGCTCTTTAAAGCTATGATCATGTAAGAAACACATAACTATTCTTGAGTCTTTTTAAACACAATGAAATTCTTAATGAATAGTTATTGTTTCAAATTAATTGCACACTGTACTTACCAGCAATGTAAAGAAAATAGCAAATGAACATCTGATACTTTATGAGACCACTGACAACCTTATACAATAAGTGATCTGAAGTTACTGTGTTAACAAGCTGTCGACTAAGAAAACGCCCATAAGTAAACAACATTGCTGTGAAAAAGAAGTGCCTGCAAAAAAAATACCCTTACATAAAGAACTTGAACAGAATAGGCATACTTTTGAAAAGCATTGCATTGATGGCATCTACGAGATTAAAAAAAATTCCAGCTCAAATCATAGTACAATTGAAATGACCTACCAATTCAGTAGCCTGAAACCTGGTAGTTGTTTTTCTTCACTGGATTTTCTGAGTAGGTTAAAAAGCTCTTTGGCCATGAATATTTGAATAACAACCACCATGGCCCAGATATAGAGGTGACCCATATAAACTATCAACACAAAGCCTCCAATCATCCATACTGTAGAATATGTACGGATAAGCATTGACTTATACTTATTCTGATCATTGACAAGCAAAGCTGGTCCATTGGTTCTATTCCCATCTGCAGTAGCCTGAACAAAAAGGTATCAATAAGCTCCAAAAAATGTGTGCCAGGTGTAACACAAAACAAGTTGTTGCTTTAGCTTTGCATCGTGCTCCTGTTTCAGTGACTCGGAAAACTCAAAAAATAATAAAAAGGAAGAATGAAGAGATGGAAGAGTAAATAAATGTAGTAACAACAGAGCAAACAATTTTTATTCACATCAACAACTCACCCTACAGGTATGGTTATGAGAAGTCCAAAATAATCGAGAAAGTAAAGTTAAAAGATAGGCATTTTGGTTACACAATAGCACAGCAAGCTCACTATACAAACAAAATAAATGAACCACTCTTCCCAACCACAAGGGTCTGCCCAACCACAAAAATAAATAAACACGGAGATATGAAGGCAATGCATACTGAGAAACCAAGGGGCCTTTCTGTTTGCTAAAATTTGTCATAATGAAATAGCCTACCTCAGTAGGACGTCTTCGCTGCCTGGCACGTCCTACATGAGAAGCAGAAACATCACTAGAGCTTGTGTCCCTTTCCATCGCTGCTATTTGATCTATATAAAATCATAGTAGTCAATCAGACCGGATTCAATAAGAACACATACTGACTATAGCGAGTAACTCATAGAATACACAGTAAACAGAACTTTACAATTTAGAGATGGTTCTGATAAGTAGAATGTGCAACAATTGGAGATCACAGTACAAAGCTCGCTCTAACACTAAACTGCCATAACAACAAGTAACTCGGCAAACTAGCAGTTCGTGCGTGTGAAATGATTAGACGACAAGAAGCCAACCATGCAAACTTCCTTGCTGTGGCACGGCAAGCGCCCCCCTTTGCCCCACACCTACAACACTTATCCAACGTCCACGCAATAAACTAAACACATCGCTGTCACGATTATTGATTCCTGCTCGCAGCCGCTCATCTGCAGGCCGTTCCCCAACTCATCTCTCTTAATAACAATTTGGTTCGAGAGAATACCTCCAGCTAACCAACTAAAAATCATTCGCAACAGCAGCATTCCATGGCCAGCTAAAAAGCCAGGGCGTAATATTCCCCCCGGAATTCGTTTTTAAAACGAAAAGCAATCACTAGCCCACTGTGCCGCATCAATCACAACCCCAGAGTCACGCACGAACACCTGATAACGAATCCCTCAACAACACAAACATCAAACAAGCCCACCCCTAAAACTAGCACGGAACTGCTTGCAATCCAACCAGCAACCAGCAAAGTAAGCGAAAGGGACGAGCGGCTGAGATTGAGACCTCACCGCGAAGCGAGCCCTCGGGCCGGAGGAGGGCGCCGTCGCCGGAGAAAGGCCCCGAGCTCGCCGGAACCCTAACTCGGCGAGGCGCGCGGCGCGGGGAGAGGAGGCGGCGGCAGCGTGCTTCGAGAAGGGGGAGGAGAGAGACTAGAGAGGGAGAGGGAGTTGTGGACTTGCGGAGCTGTGCGTGGTGGCTGGCTCTGCTTCGTAATTATCGTGGGGGAAATTCC
More
|
||||||||||
| CDS seq | ATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTATAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATATCTGCTTTTGTGTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAAGACCTGTCGACAGGGTGGCTTTGTTGTGACCCTGGTCCTATGTTTAAGCCAGAACATTATTCTTTGGGAGAATGGGTGCCAAAGGGGTTCCCTTGGAAGGAAGTTGTTCTTTTGCCTGTGCAGTGGCATGCTTTAGCACTAGGTTTGTTTGCATCAATAATAGCACCTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAGGATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGATTGTCAGATGGTTATGGCAGTTTTTGCATACATATATCACCAATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTGGGGAAATCTACCGTGAAAGGCAATTAATGCAGAGCTGA
More
|
||||||||||
| Protein seq | MERDTSSSDVSASHVGRARQRRRPTEATADGNRTNGPALLVNDQNKYKSMLIRTYSTVWMIGGFVLIVYMGHLYIWAMVVVIQIFMAKELFNLLRKSSEEKQLPGFRLLNWHFFFTAMLFTYGRFLSRQLVNTVTSDHLLYKVVSGLIKYQMFICYFLYIAGFVWFILTLKKKTYKYQFKQYAWTHMILLTVFAQSSFTVANIFEGMFWFLLPASLIVINDIAAYLFGFFLGRTPLIKLSPKKTWEGFIGASVTTIISAFVLANVMGRFQWLTCPRKDLSTGWLCCDPGPMFKPEHYSLGEWVPKGFPWKEVVLLPVQWHALALGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFISPQNYSVELILEQILRNLTFEEQKFLYQQLGEIYRERQLMQS |
||||||||||
| Function | Phosphatidate cytidylyltransferase 1 [UniProtKB/Swiss-Prot:O04928] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0033530 | OsARC_01g0033530.03 | Chr01 | 32191112 | 32197785 | - | NAM | ||
| CDS seq | ATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATATCTGCTTTTGTGTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAAGACCTGTCGACAGGGTGGCTTTGTTGTGACCCTGGTCCTATGTTTAAGCCAGAACATTATTCTTTGGGAGAATGGGTGCCAAAGGGGTTCCCTTGGAAGGAAGTTGTTCTTTTGCCTGTGCAGTGGCATGCTTTAGCACTAGGTTTGTTTGCATCAATAATAGCACCTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAGGATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGATTGTCAGATGGTTATGGCAGTTTTTGCATACATATATCACCAATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTGGGGAAATCTACCGTGAAAGGCAATTAATGCAGAGCTGA
More
|
|||||||
| Protein seq | MLIRTYSTVWMIGGFVLIVYMGHLYIWAMVVVIQIFMAKELFNLLRKSSEEKQLPGFRLLNWHFFFTAMLFTYGRFLSRQLVNTVTSDHLLYKVVSGLIKYQMFICYFLYIAGFVWFILTLKKKTYKYQFKQYAWTHMILLTVFAQSSFTVANIFEGMFWFLLPASLIVINDIAAYLFGFFLGRTPLIKLSPKKTWEGFIGASVTTIISAFVLANVMGRFQWLTCPRKDLSTGWLCCDPGPMFKPEHYSLGEWVPKGFPWKEVVLLPVQWHALALGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFISPQNYSVELILEQILRNLTFEEQKFLYQQLGEIYRERQLMQS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0033530 | OsARC_01g0033530.02 | Chr01 | 32193497 | 32197786 | - | NAM | ||
| CDS seq | ATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTATAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATATCTGCTTTTGTGTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAAGACCTGTCGACAGGGTGGCTTTGTTGTGACCCTGGTCCTATGTTTAAGCCAGAACATTATTCTTTGGGAGAATGGGTGCCAAAGGGGGTAAGAACATTGAACATTATTCTGTTCAATTTATTTATTTTACTTTCGCTGTTATAG
More
|
|||||||
| Protein seq | MERDTSSSDVSASHVGRARQRRRPTEATADGNRTNGPALLVNDQNKYKSMLIRTYSTVWMIGGFVLIVYMGHLYIWAMVVVIQIFMAKELFNLLRKSSEEKQLPGFRLLNWHFFFTAMLFTYGRFLSRQLVNTVTSDHLLYKVVSGLIKYQMFICYFLYIAGFVWFILTLKKKTYKYQFKQYAWTHMILLTVFAQSSFTVANIFEGMFWFLLPASLIVINDIAAYLFGFFLGRTPLIKLSPKKTWEGFIGASVTTIISAFVLANVMGRFQWLTCPRKDLSTGWLCCDPGPMFKPEHYSLGEWVPKGVRTLNIILFNLFILLSLL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0033530 | OsARC_01g0033530.01 | Chr01 | 32191112 | 32197786 | - | NAM | ||
| CDS seq | ATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTATAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATATCTGCTTTTGTGTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAAGACCTGTCGACAGGGTGGCTTTGTTGTGACCCTGGTCCTATGTTTAAGCCAGAACATTATTCTTTGGGAGAATGGGTGCCAAAGGGGTTCCCTTGGAAGGAAGTTGTTCTTTTGCCTGTGCAGTGGCATGCTTTAGCACTAGGTTTGTTTGCATCAATAATAGCACCTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAGGATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGATTGTCAGATGGTTATGGCAGTTTTTGCATACATATATCACCAATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTGGGGAAATCTACCGTGAAAGGCAATTAATGCAGAGCTGA
More
|
|||||||
| Protein seq | MERDTSSSDVSASHVGRARQRRRPTEATADGNRTNGPALLVNDQNKYKSMLIRTYSTVWMIGGFVLIVYMGHLYIWAMVVVIQIFMAKELFNLLRKSSEEKQLPGFRLLNWHFFFTAMLFTYGRFLSRQLVNTVTSDHLLYKVVSGLIKYQMFICYFLYIAGFVWFILTLKKKTYKYQFKQYAWTHMILLTVFAQSSFTVANIFEGMFWFLLPASLIVINDIAAYLFGFFLGRTPLIKLSPKKTWEGFIGASVTTIISAFVLANVMGRFQWLTCPRKDLSTGWLCCDPGPMFKPEHYSLGEWVPKGFPWKEVVLLPVQWHALALGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFISPQNYSVELILEQILRNLTFEEQKFLYQQLGEIYRERQLMQS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0033530 | OsARC_01g0033530.04 | Chr01 | 32191112 | 32197074 | - | NAM | ||
| CDS seq | ATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTATAAGTCAATGCTTATCCGTACATATTCTACAGTATGGATGATTGGAGGCTTTGTGTTGATAGTTTATATGGGTCACCTCTATATCTGGGCCATGGTGGTTGTTATTCAAATATTCATGGCCAAAGAGCTTTTTAACCTACTCAGAAAATCCAGTGAAGAAAAACAACTACCAGGTTTCAGGCTACTGAATTGGCACTTCTTTTTCACAGCAATGTTGTTTACTTATGGGCGTTTTCTTAGTCGACAGCTTGTTAACACAGTAACTTCAGATCACTTATTGTATAAGGTTGTCAGTGGTCTCATAAAGTATCAGATGTTCATTTGCTATTTTCTTTACATTGCTGGATTTGTCTGGTTTATTTTGACTCTGAAGAAAAAGACATACAAGTATCAGTTCAAACAATATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATATCTGCTTTTGTGTTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAAGACCTGTCGACAGGGTGGCTTTGTTGTGACCCTGGTCCTATGTTTAAGCCAGAACATTATTCTTTGGGAGAATGGGTGCCAAAGGGGTTCCCTTGGAAGGAAGTTGTTCTTTTGCCTGTGCAGTGGCATGCTTTAGCACTAGGTTTGTTTGCATCAATAATAGCACCTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAGGATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGATTGTCAGATGGTTATGGCAGTTTTTGCATACATATATCACCAATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTGGGGAAATCTACCGTGAAAGGCAATTAATGCAGAGCTGA
More
|
|||||||
| Protein seq | MERDTSSSDVSASHVGRARQRRRPTEATADGNRTNGPALLVNDQNKYKSMLIRTYSTVWMIGGFVLIVYMGHLYIWAMVVVIQIFMAKELFNLLRKSSEEKQLPGFRLLNWHFFFTAMLFTYGRFLSRQLVNTVTSDHLLYKVVSGLIKYQMFICYFLYIAGFVWFILTLKKKTYKYQFKQYAWTHMILLTVFAQSSFTVANIFEGMFWFLLPASLIVINDIAAYLFGFFLGRTPLIKLSPKKTWEGFIGASVTTIISAFVLANVMGRFQWLTCPRKDLSTGWLCCDPGPMFKPEHYSLGEWVPKGFPWKEVVLLPVQWHALALGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFISPQNYSVELILEQILRNLTFEEQKFLYQQLGEIYRERQLMQS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr01 | 32196297 | 32197563 | - | OsARC_01g0033530.01,OsARC_01g0033530.02 | OsARC_01g0033530.02,OsARC_01g0033530.01,OsARC_01g0033530.03 | All |
| AF | Chr01 | 32196836 | 32197786 | - | OsARC_01g0033530.04 | OsARC_01g0033530.04,OsARC_01g0033530.02,OsARC_01g0033530.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.401735 | 0.392016 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0758400 | RBH | 4.780081 | 3.490857 | 8.341633 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g55360 | RBH | 3.762595 | 2.327699 | 2.393556 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0758400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0034280 | RBH | 0.862670 | 31.392262 | 10.481584 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0033820 | RBH | 1.377042 | 5.958790 | 5.709926 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0034260 | RBH | 3.988197 | 11.747624 | 16.843819 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0006730 | RBH | 0.038569 | 0.267997 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0033280 | RBH | 14.982630 | 24.613806 | 23.331110 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0528600 | RBH | 7.9805335 | 14.5199855 | 14.086406 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0033010 | RBH | 0.519060 | 1.949156 | 2.676998 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0524700 | RBH | 9.5638105 | 12.0229625 | 6.039043 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0033200 | RBH | 1.156553 | 0.734116 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0033260 | RBH | 2.287332 | 28.150404 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0033490 | RBH | 18.834684 | 38.556087 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0033560 | RBH | 1.978150 | 2.386318 | 3.736015 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0033370 | RBH | 0.875725 | 10.067394 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G033830 | RBH | 1.601329 | 3.498405 | 6.009533 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0033480 | RBH | 3.971910 | 31.487400 | 13.702408 |
