Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0024900 | OGI:01076640 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:25028710-25029123 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCTCGGAAGCAAGAAGGCGTCGTAGAGAGAGGAGGAGATGGCAAGGTGGTATGGGACATGGGGAGCTCGCTGTACGACTCCTACGAGCTGGCCTCGCTGTGCCGAATCCTGGACAGGCACATCGGCACCGACCTGCCGTCGTTGCACGGCGAGCCACGGCAGGAGGGGCTCGCCGCCGGAGCGCCGCCGCCGCCGCCTACGGAGAGGAACGGGCAGCAGGTCGTGGTGCTCAGGGACGACCGCCGAGGCAGGACCGGGACCGGCAGGAAGGTGACGCTGCGAACGCTGTTCAGGGCAGCGGCGTCATGGGCGATCAGGCAGAGGAAGGCGCATGACTGTGCCTGTGTTGGCGCAGCTACCACTGGAGCAATCCAACCGGTTGTCTCTCCGGGCCGGCCGGTAAAACTTTGA
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| CDS seq | ATGTCTCGGAAGCAAGAAGGCGTCGTAGAGAGAGGAGGAGATGGCAAGGTGGTATGGGACATGGGGAGCTCGCTGTACGACTCCTACGAGCTGGCCTCGCTGTGCCGAATCCTGGACAGGCACATCGGCACCGACCTGCCGTCGTTGCACGGCGAGCCACGGCAGGAGGGGCTCGCCGCCGGAGCGCCGCCGCCGCCGCCTACGGAGAGGAACGGGCAGCAGGTCGTGGTGCTCAGGGACGACCGCCGAGGCAGGACCGGGACCGGCAGGAAGGTGACGCTGCGAACGCTGTTCAGGGCAGCGGCGTCATGGGCGATCAGGCAGAGGAAGGCGCATGACTGTGCCTGTGTTGGCGCAGCTACCACTGGAGCAATCCAACCGGTTGTCTCTCCGGGCCGGCCGGTAAAACTTTGA
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| Protein seq | MSRKQEGVVERGGDGKVVWDMGSSLYDSYELASLCRILDRHIGTDLPSLHGEPRQEGLAAGAPPPPPTERNGQQVVVLRDDRRGRTGTGRKVTLRTLFRAAASWAIRQRKAHDCACVGAATTGAIQPVVSPGRPVKL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0024900 | OsARC_01g0024900.01 | Chr01 | 25028710 | 25029123 | + | NAM | ||
| CDS seq | ATGTCTCGGAAGCAAGAAGGCGTCGTAGAGAGAGGAGGAGATGGCAAGGTGGTATGGGACATGGGGAGCTCGCTGTACGACTCCTACGAGCTGGCCTCGCTGTGCCGAATCCTGGACAGGCACATCGGCACCGACCTGCCGTCGTTGCACGGCGAGCCACGGCAGGAGGGGCTCGCCGCCGGAGCGCCGCCGCCGCCGCCTACGGAGAGGAACGGGCAGCAGGTCGTGGTGCTCAGGGACGACCGCCGAGGCAGGACCGGGACCGGCAGGAAGGTGACGCTGCGAACGCTGTTCAGGGCAGCGGCGTCATGGGCGATCAGGCAGAGGAAGGCGCATGACTGTGCCTGTGTTGGCGCAGCTACCACTGGAGCAATCCAACCGGTTGTCTCTCCGGGCCGGCCGGTAAAACTTTGA
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| Protein seq | MSRKQEGVVERGGDGKVVWDMGSSLYDSYELASLCRILDRHIGTDLPSLHGEPRQEGLAAGAPPPPPTERNGQQVVVLRDDRRGRTGTGRKVTLRTLFRAAASWAIRQRKAHDCACVGAATTGAIQPVVSPGRPVKL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0621500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g43340 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0621500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0025630 | RBH | 0.0 | 3.180772 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025240 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0025590 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0024650 | RBH | 0.0 | 8.147477 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0415900 | RBH | 0.3401165 | 0.121073 | 0.175953 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024330 | RBH | 0.0 | 0.124147 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0404400 | RBH | 0.4796115 | 0.1718715 | 0.1214825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0024590 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0024590 | RBH | 0.205702 | 7.297197 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0024840 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0024840 | RBH | 0.0 | 0.321105 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0024700 | RBH | 0.0 | 3.859621 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G024980 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0024720 | RBH | 0.0 | 0.0 | 0.0 |
