Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0024300 | OGI:01075140 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:24493423-24496073 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAAGGGAAAATCATGTACATTGATTGGACACAAATTAATGTATAGTACAGAAGTAATCACAAAGTGCCAATGGTAAAATAGAGATTACATAATAATAAAAGGTGAATTCTTGTTAGTAACTGAATCTCAATGCTTACCTTTGCTTCTATTTGCCATAGCTAAGATTTCACTTTATATATAGCAAAACTCATAATCTGACACTGGCCATACAATGGAAAGTTTAATCTTCTCAAGCCAGCTCTTGATCCTTATCCTGTGGAACTTAAATTAGGATTCTCCGCGTCAATGGGACTGTCACTTCCCAAAGATTTCATGCCAACTAGTATGTCATATGTTGTATCATCTGGCATAATTTTCCTTTCAAGCATTTCATCATGCAACCGGAACGCTTCTTGCAGCTTTCCATTACGGAGGTATCCGTTTATCAACATGTTGTACATCAAAACATTAGGGCGTATATCTAACCTATTCATTTCATCCAATAATTTTCTAGCATCATCGATATCTCCGTTGCGGCAAAGACCATGTGTTAATGCTGTGAAAGTAATATGATCAGGAATATTACCCTTAGCCACCATCTCTGAGTATAGTTTCAATGCAAAGGTTACATTGCCATCTTTTGAGAACCCATCAATTAAGGTAGTGTAGGTTGCTGTATCAAGATCAATTCCTTCTTTAATCATTTTCTCGTACAATCTCAAAGCTTCTTCCATCATTTTCAAATTCTTGTACCCTGTAATGAAACTGTTGTAGACTGAAATATTTGGTAAAAGACCATCTTTCAGCATAAGGACAAGAACTTGCAGTGCATGAGACATATTCCCCTCTTGGCAAAACCCAAATATTAAGGAATTATATGCAGCGATATCAGGTCGAAGGCCTTTGCACCTGACATCATTTAGCATCTTCAGTGCCAGGTCACAGCAACTAGTCTTACAGTATCCATCAATGAAACTGGTATATGTTACTATGTTGGGAGGTATGCCTTTTGCACACATCTGCTGATACACAGCAAATGCTGAGCCCATCATGCCAGCTTTTATAAATCCATTGATGATACTATTGTATGTCATTGCAGTTGGAACAAAACCTTCAGTTTCAAATCTCTTCAGCATTTCACCAACTTCACAAACTCGGCCAACCACACAAAGGCCATTTATGAGAGTGTTGTATGTATAATCATTGCAAGAGACTCCATTCTGTTTCATTTCAGCAAGGAGGGCATAAGCCTTGTCAAAAGCAGCCTTATTTATGTGCCCTTTCATCAGCGTTGTGTAAGTGACAACATTAGGTGTGAACCCTTTTCCAGGCATCTCAGTGTACAGCTTGACTGCTTCATCCATGCACCCATTCACACAATAACACAACAACAAGCTGTGGTATGTCACGATATATGGTTTCACTCCTGTTTCATTCATCTTTTCCCACAAGTTAAGCGCTTCGCGAATTTTGCGACGCTGACAGAGCCAGTGAATTAGTATATTGTATGTGAAGGCATCTGGTATCCCAGAATCAGCCATCTCCTTGAACAAGCTTACAGCATCCTTCCACAATTTATCATTCAAAAGGCCCTTGATAACCATATTGAACTCATTTGTGCTCGGCAACAATCCATGATCTCTCATCTGGCGGCACAGCTCATAGGCCTTCTCTGGCATCCCCTCTTCAGTACAACCTCTGATCAGCACCGTATATGTTACATCGGTTGGTACCAGACCGTCCCTTAGTGTCTCCTCGAATATATCCAGCGCTTTCCTAACCTCCCGTTGCAAGCAATAGCCGTGCATCAACGTTGTTGCGAGAACCACACTCATTTTCTTCCCCGTAGCAAGCAACTCATCCTTTATGTGCAGCGCCTCCTCCATCCTCCCTCCCTTCACGAGCACATCCACCACGGAGTTGAACGTGAAGTCCCACGGCACGAACCCCGCATCCTGCATCTTCCTCAGCACCAGCAGAGCACGGTTGGCGTCACGCAGCTTGCATAGGGACGCGATAGCGACAGAGCACACGCGCTGGTCGGGCTCGATCTCAGAGGCAGGCATTTCGTCGAACAGCCTGACCGCGTCGTCGTACATCCCTTCCTTGAAGCAAGCGCGCATCACCACGTCGAACATCCACGCGTCCAAGGGGCGCCCCTTCCCCCGCATCTCGGCGAGCAGCGCGAGGGCGTCCGCGGCCGACGCGCTCCGCGCCGTGACGGCGAGGAGGTCGGTGCGGGACTTGGCGTCCGGGGTGACCCCGCGCGCCTCCATGCTGGCGTAGGCGGCGGCGGCCGCGCCAGCGCGGCCGGCGCGGCACAGGGAGGCGAGGAGGCGGCTGAGGAGCGCGGTGGCCTGCCGTGACCCCGGGCCGCCCACGGCGGAGAGGACGGCGTCGACGAGCGCGTCCGGCGCGAGGCGGGCGTCGAAGGCGGCGGACTTGAGGAGCGGGTACGCGCGGCTGTGGGAGGACGGGGAGGCGGCGAGGATCGCGCGGAGCACCGAGGAGAGGTCCCTCACCACGGCCGGGGCGCGCGAGAGGGGCCGGCCGTTGGTGAAGTGGGCGGAGAGCGGCTCGCTCGGCTGGGAGGCGGACGCCGCAGCAGCCGTGCAGTTGGAGCGCCATGAGAGCGGGCGCGAGGTGGCGGCGCGGAGCTGTGGCTGGCGCAT
More
|
||||||||||
| CDS seq | ATGCGCCAGCCACAGCTCCGCGCCGCCACCTCGCGCCCGCTCTCATGGCGCTCCAACTGCACGGCTGCTGCGGCGTCCGCCTCCCAGCCGAGCGAGCCGCTCTCCGCCCACTTCACCAACGGCCGGCCCCTCTCGCGCGCCCCGGCCGTGGTGAGGGACCTCTCCTCGGTGCTCCGCGCGATCCTCGCCGCCTCCCCGTCCTCCCACAGCCGCGCGTACCCGCTCCTCAAGTCCGCCGCCTTCGACGCCCGCCTCGCGCCGGACGCGCTCGTCGACGCCGTCCTCTCCGCCGTGGGCGGCCCGGGGTCACGGCAGGCCACCGCGCTCCTCAGCCGCCTCCTCGCCTCCCTGTGCCGCGCCGGCCGCGCTGGCGCGGCCGCCGCCGCCTACGCCAGCATGGAGGCGCGCGGGGTCACCCCGGACGCCAAGTCCCGCACCGACCTCCTCGCCGTCACGGCGCGGAGCGCGTCGGCCGCGGACGCCCTCGCGCTGCTCGCCGAGATGCGGGGGAAGGGGCGCCCCTTGGACGCGTGGATGTTCGACGTGGTGATGCGCGCTTGCTTCAAGGAAGGGATGTACGACGACGCGGTCAGGCTGTTCGACGAAATGCCTGCCTCTGAGATCGAGCCCGACCAGCGCGTGTGCTCTGTCGCTATCGCGTCCCTATGCAAGCTGCGTGACGCCAACCGTGCTCTGCTGGTGCTGAGGAAGATGCAGGATGCGGGGTTCGTGCCGTGGGACTTCACGTTCAACTCCGTGGTGGATGTGCTCGTGAAGGGAGGGAGGATGGAGGAGGCGCTGCACATAAAGGATGAGTTGCTTGCTACGGGGAAGAAAATGAGTGTGGTTCTCGCAACAACGTTGATGCACGGCTATTGCTTGCAACGGGAGGTTAGGAAAGCGCTGGATATATTCGAGGAGACACTAAGGGACGGTCTGGTACCAACCGATGTAACATATACGGTGCTGATCAGAGGTTGTACTGAAGAGGGGATGCCAGAGAAGGCCTATGAGCTGTGCCGCCAGATGAGAGATCATGGATTGTTGCCGAGCACAAATGAGTTCAATATGGTTATCAAGGGCCTTTTGAATGATAAATTGTGGAAGGATGCTGTAAGCTTGTTCAAGGAGATGGCTGATTCTGGGATACCAGATGCCTTCACATACAATATACTAATTCACTGGCTCTGTCAGCGTCGCAAAATTCGCGAAGCGCTTAACTTGTGGGAAAAGATGAATGAAACAGGAGTGAAACCATATATCGTGACATACCACAGCTTGTTGTTGTGTTATTGTGTGAATGGGTGCATGGATGAAGCAGTCAAGCTGTACACTGAGATGCCTGGAAAAGGGTTCACACCTAATGTTGTCACTTACACAACGCTGATGAAAGGGCACATAAATAAGGCTGCTTTTGACAAGGCTTATGCCCTCCTTGCTGAAATGAAACAGAATGGAGTCTCTTGCAATGATTATACATACAACACTCTCATAAATGGCCTTTGTGTGGTTGGCCGAGTTTGTGAAGTTGGTGAAATGCTGAAGAGATTTGAAACTGAAGGTTTTGTTCCAACTGCAATGACATACAATAGTATCATCAATGGATTTATAAAAGCTGGCATGATGGGCTCAGCATTTGCTGTGTATCAGCAGATGTGTGCAAAAGGCATACCTCCCAACATAGTAACATATACCAGTTTCATTGATGGATACTGTAAGACTAGTTGCTGTGACCTGGCACTGAAGATGCTAAATGATGTCAGGTGCAAAGGCCTTCGACCTGATATCGCTGCATATAATTCCTTAATATTTGGGTTTTGCCAAGAGGGGAATATGTCTCATGCACTGCAAGTTCTTGTCCTTATGCTGAAAGATGGTCTTTTACCAAATATTTCAGTCTACAACAGTTTCATTACAGGGTACAAGAATTTGAAAATGATGGAAGAAGCTTTGAGATTGTACGAGAAAATGATTAAAGAAGGAATTGATCTTGATACAGCAACCTACACTACCTTAATTGATGGGTTCTCAAAAGATGGCAATGTAACCTTTGCATTGAAACTATACTCAGAGATGGTGGCTAAGGGTAATATTCCTGATCATATTACTTTCACAGCATTAACACATGGTCTTTGCCGCAACGGAGATATCGATGATGCTAGAAAATTATTGGATGAAATGAATAGGTTAGATATACGCCCTAATGTTTTGATGTACAACATGTTGATAAACGGATACCTCCGTAATGGAAAGCTGCAAGAAGCGTTCCGGTTGCATGATGAAATGCTTGAAAGGAAAATTATGCCAGATGATACAACATATGACATACTAGTTGGCATGAAATCTTTGGGAAGTGACAGTCCCATTGACGCGGAGAATCCTAATTTAAGTTCCACAGGATAA
More
|
||||||||||
| Protein seq | MRQPQLRAATSRPLSWRSNCTAAAASASQPSEPLSAHFTNGRPLSRAPAVVRDLSSVLRAILAASPSSHSRAYPLLKSAAFDARLAPDALVDAVLSAVGGPGSRQATALLSRLLASLCRAGRAGAAAAAYASMEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGRPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGMKSLGSDSPIDAENPNLSSTG |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At3g54980, mitochondrial [UniProtKB/Swiss-Prot:Q9SV46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0024300 | OsARC_01g0024300.01 | Chr01 | 24493423 | 24496073 | - | NAM | ||
| CDS seq | ATGCGCCAGCCACAGCTCCGCGCCGCCACCTCGCGCCCGCTCTCATGGCGCTCCAACTGCACGGCTGCTGCGGCGTCCGCCTCCCAGCCGAGCGAGCCGCTCTCCGCCCACTTCACCAACGGCCGGCCCCTCTCGCGCGCCCCGGCCGTGGTGAGGGACCTCTCCTCGGTGCTCCGCGCGATCCTCGCCGCCTCCCCGTCCTCCCACAGCCGCGCGTACCCGCTCCTCAAGTCCGCCGCCTTCGACGCCCGCCTCGCGCCGGACGCGCTCGTCGACGCCGTCCTCTCCGCCGTGGGCGGCCCGGGGTCACGGCAGGCCACCGCGCTCCTCAGCCGCCTCCTCGCCTCCCTGTGCCGCGCCGGCCGCGCTGGCGCGGCCGCCGCCGCCTACGCCAGCATGGAGGCGCGCGGGGTCACCCCGGACGCCAAGTCCCGCACCGACCTCCTCGCCGTCACGGCGCGGAGCGCGTCGGCCGCGGACGCCCTCGCGCTGCTCGCCGAGATGCGGGGGAAGGGGCGCCCCTTGGACGCGTGGATGTTCGACGTGGTGATGCGCGCTTGCTTCAAGGAAGGGATGTACGACGACGCGGTCAGGCTGTTCGACGAAATGCCTGCCTCTGAGATCGAGCCCGACCAGCGCGTGTGCTCTGTCGCTATCGCGTCCCTATGCAAGCTGCGTGACGCCAACCGTGCTCTGCTGGTGCTGAGGAAGATGCAGGATGCGGGGTTCGTGCCGTGGGACTTCACGTTCAACTCCGTGGTGGATGTGCTCGTGAAGGGAGGGAGGATGGAGGAGGCGCTGCACATAAAGGATGAGTTGCTTGCTACGGGGAAGAAAATGAGTGTGGTTCTCGCAACAACGTTGATGCACGGCTATTGCTTGCAACGGGAGGTTAGGAAAGCGCTGGATATATTCGAGGAGACACTAAGGGACGGTCTGGTACCAACCGATGTAACATATACGGTGCTGATCAGAGGTTGTACTGAAGAGGGGATGCCAGAGAAGGCCTATGAGCTGTGCCGCCAGATGAGAGATCATGGATTGTTGCCGAGCACAAATGAGTTCAATATGGTTATCAAGGGCCTTTTGAATGATAAATTGTGGAAGGATGCTGTAAGCTTGTTCAAGGAGATGGCTGATTCTGGGATACCAGATGCCTTCACATACAATATACTAATTCACTGGCTCTGTCAGCGTCGCAAAATTCGCGAAGCGCTTAACTTGTGGGAAAAGATGAATGAAACAGGAGTGAAACCATATATCGTGACATACCACAGCTTGTTGTTGTGTTATTGTGTGAATGGGTGCATGGATGAAGCAGTCAAGCTGTACACTGAGATGCCTGGAAAAGGGTTCACACCTAATGTTGTCACTTACACAACGCTGATGAAAGGGCACATAAATAAGGCTGCTTTTGACAAGGCTTATGCCCTCCTTGCTGAAATGAAACAGAATGGAGTCTCTTGCAATGATTATACATACAACACTCTCATAAATGGCCTTTGTGTGGTTGGCCGAGTTTGTGAAGTTGGTGAAATGCTGAAGAGATTTGAAACTGAAGGTTTTGTTCCAACTGCAATGACATACAATAGTATCATCAATGGATTTATAAAAGCTGGCATGATGGGCTCAGCATTTGCTGTGTATCAGCAGATGTGTGCAAAAGGCATACCTCCCAACATAGTAACATATACCAGTTTCATTGATGGATACTGTAAGACTAGTTGCTGTGACCTGGCACTGAAGATGCTAAATGATGTCAGGTGCAAAGGCCTTCGACCTGATATCGCTGCATATAATTCCTTAATATTTGGGTTTTGCCAAGAGGGGAATATGTCTCATGCACTGCAAGTTCTTGTCCTTATGCTGAAAGATGGTCTTTTACCAAATATTTCAGTCTACAACAGTTTCATTACAGGGTACAAGAATTTGAAAATGATGGAAGAAGCTTTGAGATTGTACGAGAAAATGATTAAAGAAGGAATTGATCTTGATACAGCAACCTACACTACCTTAATTGATGGGTTCTCAAAAGATGGCAATGTAACCTTTGCATTGAAACTATACTCAGAGATGGTGGCTAAGGGTAATATTCCTGATCATATTACTTTCACAGCATTAACACATGGTCTTTGCCGCAACGGAGATATCGATGATGCTAGAAAATTATTGGATGAAATGAATAGGTTAGATATACGCCCTAATGTTTTGATGTACAACATGTTGATAAACGGATACCTCCGTAATGGAAAGCTGCAAGAAGCGTTCCGGTTGCATGATGAAATGCTTGAAAGGAAAATTATGCCAGATGATACAACATATGACATACTAGTTGGCATGAAATCTTTGGGAAGTGACAGTCCCATTGACGCGGAGAATCCTAATTTAAGTTCCACAGGATAA
More
|
|||||||
| Protein seq | MRQPQLRAATSRPLSWRSNCTAAAASASQPSEPLSAHFTNGRPLSRAPAVVRDLSSVLRAILAASPSSHSRAYPLLKSAAFDARLAPDALVDAVLSAVGGPGSRQATALLSRLLASLCRAGRAGAAAAAYASMEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGRPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGMKSLGSDSPIDAENPNLSSTG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.094152 | 0.022251 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0611900 | RBH | 0.757685 | 0.498632 | 2.085559 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g42620 | RBH | 0.599257 | 0.330418 | 0.511192 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0611900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024990 | RBH | 0.107018 | 1.544859 | 2.560776 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0024610 | RBH | 0.048459 | 2.427249 | 0.783056 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024940 | RBH | 0.378729 | 0.801964 | 1.066221 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0024030 | RBH | 1.958727 | 5.210253 | 2.131286 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0406600 | RBH | 2.2246655 | 3.6307245 | 8.601881 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023710 | RBH | 0.216811 | 0.151261 | 0.349445 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0395000 | RBH | 1.501673 | 1.211079 | 6.653884 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023960 | RBH | 0.031250 | 0.045835 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023950 | RBH | 0.068804 | 1.113173 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0024190 | RBH | 2.221548 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0024210 | RBH | 0.139061 | 0.124641 | 0.259366 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0024080 | RBH | 0.133610 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G024330 | RBH | 0.366394 | 0.0 | 0.641588 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0024070 | RBH | 0.537220 | 1.461529 | 1.183350 |
