Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0022310 | OGI:01070450 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:22845643-22848497 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACGGATGAAAGATGTATCAGCTTATTTAATTTAAAATACACAAAACAAGGCCATGAAATATTGATTTGTCATTGATAGCAAGCCGTGTTGCCAAGATCAGTTTGCGATCAGATCGGCTGTTGCTCCCAAAACAATCAAATGCAAAATTCACATCAGTTCCACGGATCGTATGGATGATCCAGGCAGTACAGTGTATCAATAATAGAACCAAAACTCGGCTTTACGCCATAACAAACTGTAAGACCATCATTGATCTGTCGACAAGGAATCAGCTGTCAGGGGGCATGATCCATTACTCTCAATCCTTTGCAACCAATCTAATGCGCTTGCCATCAACAGAAAACCTGGAGCTTGAAGAAATCTGCGACATAGTAATAGTTCATCATTTTCTGTCACTTATCAACAGCACATCTTGACAAATACTGAAGGAGAACAAGTTAATTACAGGCAAGTAAGCTACAATTTTTTTGACATTGTACTACCTTATCCATCAAGATAGCGTGCATCTGCTCCTTATCTTCTGTCAGACCACATTCCAGAAGTTCCTTAGTTACTAGCTTTTGTAGCTTCTTTAACTTCAGAACTCCATCTGGATTCTGAAAGGGTAAAAGGAGAACTGTCAACCGCCGGATAATTTAAGCACAAACACAAAACAAAAGTAGAGCAGTGTTTGTTGTATAGAAGTCCTACCGTCTGAAGTACTTTGGTAATAATTTTCTTCCACTTGATTTTCTGCTTTTTACTGCCTTTAAGGTTGGCACTACTAACTAATTCATCTTTAGTACCCTTGCTCTTTGCTTTGGTTTCTGCCTCTTCATTTGAAGATTGTACCACTTCTCCACTGTTCACGCTCAAGTTGTTCGGTCTTTTCGTGTTATCTGGCTCTTCTGAGGTCGTATCATTTGCTCTCTTTCTCTTTGCTGCATCGTTGTCCACACCTCTTTCATTTTCAGTACTCCTCTCATTGTTTACTTGTGCTGATTCTGTCACAGGTGCACCAACAGTTTCCTTGGGAGTTTGTTCAACTCCATTTGCTTGCTTCTGAGAAGCATGATAGGCTTTTGCTTTTGCCCTGTGCTTCTTGCCATCTGCATGTGATAAGAGTGTTTGCTTGCTAGTGGTTGTCGTCTTGCAAAGGCTGTGATACAAATCCACAATAAGTGCAAAGTTTTTAAACGTTTCCACAGAGTATTTGAATTAAGACCTAATAAATATCGACCCAGAACAATGAATACTAGTGAATGCTGCTTCAGCTGATATGGCCTGGCTACAAGGACAAACACGAGATTGTTTATCTAAAGAATGATGACCTATTTTTTTTGTAACTCTGACATTGTCTTTCCAAAATAATTGGATGACCAATACTAGCTCTAAGAGTAAGTGTTATACGGTTGTAGCTACAACCAGTAGAACAAACAAGGACAAAAATGATGTTAAGCGTAGACAATTGCAGCTTAAAAAAACATCACATTTGTTTCATTAGTGTTATAGACACAATCACACCTCACATACTAAAGAATCACCTTAATAACAAAGCAAGGTGTTTCTCTATGGTTGCACCAATGCACGTAAAACACAAGGTACAAACATTAATCATACTCTACACCTTAACATTTTAAAATATAGAATGTCCAGAGCTAACATGATGGGACATGGCTTCCGCTGTTTCCACAGTTCCACTACAGAACCATCTGCAAATGTAACTATTAATATGTTGCACGGTGAAATTAGCAAACCTGCAGAACCAAGGGGGATATGTCGACAGCCCGACATTGATATCAACATCAGCATTTGGCTTTGGCTTGTCTTGCTTGCCCTGTGCATTGTTGGATGCTTTGTTCTGTCCCTTGGGACCATACTTCTCCTGAAAGGGAATGCAGCATTAAGATTCAAAGCACAATTTACACATGAATCTATAGCCAATCTGAACAAATAGAATCATCTCCGAGAGTTAAACATCCCTCAAAGAATTCAGATAAGACCTGTGTGATGTGGAGCTCAACTGCTCAGTAAATTTTGACGGAACATACTCTTAGTACAGACCTACTCAGTGTCTGAGTGGATTACATTAATAGACTTTCAAAGCATAAGACAGCGTTTGACCGATCGATTTCACAATAATCAGATCCAATCCCAACCAAATAGAACCAAATCACCCTGATCTCTGTAGTTTACTAATTAGAACATAATGAAATTGTCAGAATTCACAAATTCCACCTTAATCCCTACTATCCACTAAATCGAATGAAAGAAATGAAAGCAATTCGACCTGGCCTCACCATACAAGCAATAGCATGAAACATTTCCAATCCAATACCATTCAATTCGACACTAATTCAAACACAGGTTACATGTGCAAACCAAACGAATCACGTTTCGCTAGTACTTAATGAGCAATCAAGAAACGGGCATATGGGGAAGGTGTACTCACAGCCTCGGAGATGCACTGGGTGTGGCCCTGGACGGTCTCCTGGGTGAAGAACTCGCCGCAGTCGATGCAGGAGAGCTGCCGCCGCAACACAAAAATCGCAAACAAATCAATCACAATCCACCACTTCTCTCACCTCGAGACGATCAAGAGACTCTGCTCACTTCGGAGACGAGCAAGATCAGCGAGAGGGGGGGAGGGAGAGCAAACCCTGTAGGCGGAGCAGGAGCGGAAGTGGCCGGCGAGCTTGGGCTTCTTGAGGTCGTCGCCGCAGTCCTCGCACTGGAACCACACCATTGTCGACGCTGCCGCCGCCGCCGCCGCCTCTTCACCTCCGACGAGCGGGCGGCGCTAGGGTTTTGGGTGCGAGGCGAGGCGAAGGACGCAGCGGCAATTGGGATTTGTCCCTCGCAAGACACGCGACC
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| CDS seq | ATGGTGTGGTTCCAGTGCGAGGACTGCGGCGACGACCTCAAGAAGCCCAAGCTCGCCGGCCACTTCCGCTCCTGCTCCGCCTACAGGCTCTCCTGCATCGACTGCGGCGAGTTCTTCACCCAGGAGACCGTCCAGGGCCACACCCAGTGCATCTCCGAGGCTGAGAAGTATGGTCCCAAGGGACAGAACAAAGCATCCAACAATGCACAGGGCAAGCAAGACAAGCCAAAGCCAAATGCTGATGTTGATATCAATGTCGGGCTGTCGACATATCCCCCTTGGTTCTGCAGCCTTTGCAAGACGACAACCACTAGCAAGCAAACACTCTTATCACATGCAGATGGCAAGAAGCACAGGGCAAAAGCAAAAGCCTATCATGCTTCTCAGAAGCAAGCAAATGGAGTTGAACAAACTCCCAAGGAAACTGTTGGTGCACCTGTGACAGAATCAGCACAAGTAAACAATGAGAGGAGTACTGAAAATGAAAGAGGTGTGGACAACGATGCAGCAAAGAGAAAGAGAGCAAATGATACGACCTCAGAAGAGCCAGATAACACGAAAAGACCGAACAACTTGAGCGTGAACAGTGGAGAAGTGGTACAATCTTCAAATGAAGAGGCAGAAACCAAAGCAAAGAGCAAGGGTACTAAAGATGAATTAGTTAGTAGTGCCAACCTTAAAGGCAGTAAAAAGCAGAAAATCAAGTGGAAGAAAATTATTACCAAAGTACTTCAGACGAATCCAGATGGAGTTCTGAAGTTAAAGAAGCTACAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACAGAAGATAAGGAGCAGATGCACGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGCAAGCGCATTAGATTGGTTGCAAAGGATTGA
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| Protein seq | MVWFQCEDCGDDLKKPKLAGHFRSCSAYRLSCIDCGEFFTQETVQGHTQCISEAEKYGPKGQNKASNNAQGKQDKPKPNADVDINVGLSTYPPWFCSLCKTTTTSKQTLLSHADGKKHRAKAKAYHASQKQANGVEQTPKETVGAPVTESAQVNNERSTENERGVDNDAAKRKRANDTTSEEPDNTKRPNNLSVNSGEVVQSSNEEAETKAKSKGTKDELVSSANLKGSKKQKIKWKKIITKVLQTNPDGVLKLKKLQKLVTKELLECGLTEDKEQMHAILMDKISSSSRFSVDGKRIRLVAKD |
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| Function | UBP1-associated proteins 1C [UniProtKB/Swiss-Prot:O64571] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0022310 | OsARC_01g0022310.01 | Chr01 | 22845643 | 22848497 | - | NAM | ||
| CDS seq | ATGGTGTGGTTCCAGTGCGAGGACTGCGGCGACGACCTCAAGAAGCCCAAGCTCGCCGGCCACTTCCGCTCCTGCTCCGCCTACAGGCTCTCCTGCATCGACTGCGGCGAGTTCTTCACCCAGGAGACCGTCCAGGGCCACACCCAGTGCATCTCCGAGGCTGAGAAGTATGGTCCCAAGGGACAGAACAAAGCATCCAACAATGCACAGGGCAAGCAAGACAAGCCAAAGCCAAATGCTGATGTTGATATCAATGTCGGGCTGTCGACATATCCCCCTTGGTTCTGCAGCCTTTGCAAGACGACAACCACTAGCAAGCAAACACTCTTATCACATGCAGATGGCAAGAAGCACAGGGCAAAAGCAAAAGCCTATCATGCTTCTCAGAAGCAAGCAAATGGAGTTGAACAAACTCCCAAGGAAACTGTTGGTGCACCTGTGACAGAATCAGCACAAGTAAACAATGAGAGGAGTACTGAAAATGAAAGAGGTGTGGACAACGATGCAGCAAAGAGAAAGAGAGCAAATGATACGACCTCAGAAGAGCCAGATAACACGAAAAGACCGAACAACTTGAGCGTGAACAGTGGAGAAGTGGTACAATCTTCAAATGAAGAGGCAGAAACCAAAGCAAAGAGCAAGGGTACTAAAGATGAATTAGTTAGTAGTGCCAACCTTAAAGGCAGTAAAAAGCAGAAAATCAAGTGGAAGAAAATTATTACCAAAGTACTTCAGACGAATCCAGATGGAGTTCTGAAGTTAAAGAAGCTACAAAAGCTAGTAACTAAGGAACTTCTGGAATGTGGTCTGACAGAAGATAAGGAGCAGATGCACGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGCAAGCGCATTAGATTGGTTGCAAAGGATTGA
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| Protein seq | MVWFQCEDCGDDLKKPKLAGHFRSCSAYRLSCIDCGEFFTQETVQGHTQCISEAEKYGPKGQNKASNNAQGKQDKPKPNADVDINVGLSTYPPWFCSLCKTTTTSKQTLLSHADGKKHRAKAKAYHASQKQANGVEQTPKETVGAPVTESAQVNNERSTENERGVDNDAAKRKRANDTTSEEPDNTKRPNNLSVNSGEVVQSSNEEAETKAKSKGTKDELVSSANLKGSKKQKIKWKKIITKVLQTNPDGVLKLKKLQKLVTKELLECGLTEDKEQMHAILMDKISSSSRFSVDGKRIRLVAKD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.079650 | 0.217135 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0583200 | RBH | 0.000000 | 1.104669 | 1.871644 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g40110 | RBH | 0.000000 | 0.702992 | 0.456289 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0583200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0022990 | RBH | 0.337859 | 4.798290 | 3.427931 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0022590 | RBH | 0.0 | 1.701328 | 1.022843 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0022920 | RBH | 0.313013 | 6.650145 | 2.692651 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022040 | RBH | 0.000000 | 9.143867 | 3.362280 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0378200 | RBH | 2.3047455 | 3.793409 | 2.824311 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0021990 | RBH | 0.072044 | 0.624449 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0367400 | RBH | 2.047959 | 3.5357535 | 13.32241 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0021960 | RBH | 0.092891 | 0.090611 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0021900 | RBH | 0.262696 | 4.388128 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022170 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022240 | RBH | 0.137249 | 0.734571 | 0.342828 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0022020 | RBH | 0.000000 | 4.999076 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022330 | RBH | 0.172793 | 7.315416 | 0.260717 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0022010 | RBH | 0.225637 | 11.781597 | 2.341281 |
