Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0011480 | OGI:01028750 | 14/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:9230528-9233045 | ||||||||
| Gene Symbol | prx4, prx16, OsPOD1, POD1 | ||||||||||
| DNA seq | AGTCCGGCCTACAGCTTCCAGCCGAACCCATAAACAAAGCACGCAACTTGGGAGCGAGCGAGGGGCCGCACAGCTAGCCATCGATCGAGTAGCCAGGCCACCACATCGCCGTCCTCGCTAGCTGGCTGTGTCAACTGCAGCGACGACGAAACGAACGATCGATCTCGCCGGCTGGCTGGCTAGCTGCTCCTCCTATAAATCCCCGGCTCCCAGCCGTCCCCCTCCGATACCGTCATCTCACCACACAAACGCAGGCACACAAACACAGAGAGCAGCCCAAACCGACCAAAATCACTGCAGAGTTCAGGCACTTCTTCAGATAGTTCTCCCCCTCTGTTTCTTTCTCTCTTTATTTCTTTCTCGAGTTCAGTTTGAGAGATGGATTTGGCGTGGTGGTTCGCGGTGGCCGTGGTGGTGTGCGGCCTTGTGGGGGGCGGCAGCGCCGGGCTGCTGGAGACCAACCCGGGTTTGGCGTACAACTTCTACCAGAAGTCGTGCCCCAACGTGGACTCCATCGTCCGCAGCGTCACCTGGGCGCAGGTCGCCGCCAACCCGGCGCTCCCCGGCCGCCTCCTCCGCCTCCACTTCCATGACTGCTTCGTCCAGGTCAGTGCCAGCAAAAATACTCCCGTTTCTTCGCTGCTTCAGCTCTCTCCAAGCCCCCATTTCGCCGTGTCGGCGCCGTGCCGCGCGCCGGCCTAGCTAGCCAGCCATGGCCGGTTTTCTTTCTCCCTGTCTACATCCTGAGAGGAATTAACTGCGAGAGCCACCATTTCGAGCTACCTAGCTCTAGCTACAGTCTAGAGGCCTTCACTGGTCCTGCATTCTTTGCATGGCGTCGATTGGGGACGAAACGAGGCTCAAGTGAACCGGGGTTTTTACCGCGGTGGTTCGTGGCTTTTACTCTGATTTTCACAGTGGCGGGAGGACCAGCCGAGAAGATATTATCTTGCTTTTCGCCTGTGCCTGTACACATATACGTAAGCATTACGGCACCTTTTCCCCGGTTCGCGGCAGCGCGAGGCGAGGGGCGAGGCGGTCGCGACGCGCCAAAGCAACGAGACAAACGGGAAAAATACTGCGTGCCTAGTACAGGGGGGGAGCACGCCGAATCTTGTCGTATTTTTCCCCCCATTTTTTTTCCCCGTGCGGCCCGTGCGTTGCGTTGCCGTGCAGCTCACATGCGGCGCTGAGCCGATGCATCGCGCGCGACAGCTAAGCTTATCAAAGCTGCCGCGCCCTGTACGGCGCCCATGCATGCCATGCATGGGCCATGGCCACACCACCGGCCTTGGCCCCCTTGCTCCCGCGATTTTTTTTCAAACCCTGCAAAGCGCAGCTGTTTGTGGCCGCGTGTCAATGGCGCCTGGCTGACCGGTCGGTTTTCTTCTTTTTGTGTGTGTGGTTTTGCGTGCAGGGGTGCGACGCGTCGATCTTGCTGGACAACGCCGGGAGCGAGAAGACGGCGGGGCCGAACCTATCGGTGGGGGGATACGAGGTGATCGACGCCATCAAGACGCAGCTGGAGCAGGCGTGCCCCGGGGTGGTGTCGTGCGCGGACATCGTGGCGCTCGCCGCGCGCGACGCCGTGTCGTACCAGTTCAAGGCGTCGCTGTGGCAGGTGGAGACCGGGAGGCGCGACGGGCCCGTGTCTCTGGCGTCCAACACCGGCGCGCTGCCGTCGCCGTTCGCCGGGTTCAGCACGCTCCTCCAGAGCTTCGCCAACCGCGGGCTCAACCTGACCGACCTCGTCGCGCTCTCCGGCGCGCACACCATCGGCAAGGCCAGCTGCTCCAGCGTCACGCCGCGGCTGTACCAGGGGAACACCACCTCCCTCGACCCGCTGCTCGACTCCGCCTACGCCAAGGCGCTCATGTCGTCGTGCCCCAACCCGTCGCCGTCGTCGTCCACCATCGACCTCGACGTCGCCACGCCGCTCAAGTTCGACAGCGGTTACTACGCCAACCTGCAGAAGAAGCAGGGCGCGCTGGCGTCCGACGCCGCGCTCACCCAGAACGCCGCCGCGGCGCAGATGGTGGCAGACCTCACCAACCCGATCAAGTTCTACGCCGCGTTCTCCATGTCCATGAAGAAGATGGGACGCATCGACGTGCTCACCGGCAGCAAAGGGAATATCAGGAAGCAGTGCCGCTCCGCCTCCTGAATCCTGACGATCACCATACAAACATATTTTCTTCTTGGTTTCTTGAATTTTTTTTTCTTCTTCTCCTCTCTCGTTTCATCGGCGCTGATCAAAATATATTGTGCGCCATGATGATTAATTAAGGTCCCAAGATCTGTATTAATTTGTTAAGTGCTCGATTCGATCGTTCAAGGTGTGACATTTTGTTCATCTTGGCCTTCGTCGCGCGATCTAATCGAAGAATGAAAGAATGCAGCTCGTTCTTTCCACTGCTGCTTCAAACAAACATGCAGATACTACGCACGTAGGAGTACAAATCTACTGCTACTCCCACTGTTCTTTGTTTAATCCAGCTAAGATGATGGTGACACGAGC
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| CDS seq | ATGGATTTGGCGTGGTGGTTCGCGGTGGCCGTGGTGGTGTGCGGCCTTGTGGGGGGCGGCAGCGCCGGGCTGCTGGAGACCAACCCGGGTTTGGCGTACAACTTCTACCAGAAGTCGTGCCCCAACGTGGACTCCATCGTCCGCAGCGTCACCTGGGCGCAGGTCGCCGCCAACCCGGCGCTCCCCGGCCGCCTCCTCCGCCTCCACTTCCATGACTGCTTCGTCCAGGGGTGCGACGCGTCGATCTTGCTGGACAACGCCGGGAGCGAGAAGACGGCGGGGCCGAACCTATCGGTGGGGGGATACGAGGTGATCGACGCCATCAAGACGCAGCTGGAGCAGGCGTGCCCCGGGGTGGTGTCGTGCGCGGACATCGTGGCGCTCGCCGCGCGCGACGCCGTGTCGTACCAGTTCAAGGCGTCGCTGTGGCAGGTGGAGACCGGGAGGCGCGACGGGCCCGTGTCTCTGGCGTCCAACACCGGCGCGCTGCCGTCGCCGTTCGCCGGGTTCAGCACGCTCCTCCAGAGCTTCGCCAACCGCGGGCTCAACCTGACCGACCTCGTCGCGCTCTCCGGCGCGCACACCATCGGCAAGGCCAGCTGCTCCAGCGTCACGCCGCGGCTGTACCAGGGGAACACCACCTCCCTCGACCCGCTGCTCGACTCCGCCTACGCCAAGGCGCTCATGTCGTCGTGCCCCAACCCGTCGCCGTCGTCGTCCACCATCGACCTCGACGTCGCCACGCCGCTCAAGTTCGACAGCGGTTACTACGCCAACCTGCAGAAGAAGCAGGGCGCGCTGGCGTCCGACGCCGCGCTCACCCAGAACGCCGCCGCGGCGCAGATGGTGGCAGACCTCACCAACCCGATCAAGTTCTACGCCGCGTTCTCCATGTCCATGAAGAAGATGGGACGCATCGACGTGCTCACCGGCAGCAAAGGGAATATCAGGAAGCAGTGCCGCTCCGCCTCCTGA
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| Protein seq | MDLAWWFAVAVVVCGLVGGGSAGLLETNPGLAYNFYQKSCPNVDSIVRSVTWAQVAANPALPGRLLRLHFHDCFVQGCDASILLDNAGSEKTAGPNLSVGGYEVIDAIKTQLEQACPGVVSCADIVALAARDAVSYQFKASLWQVETGRRDGPVSLASNTGALPSPFAGFSTLLQSFANRGLNLTDLVALSGAHTIGKASCSSVTPRLYQGNTTSLDPLLDSAYAKALMSSCPNPSPSSSTIDLDVATPLKFDSGYYANLQKKQGALASDAALTQNAAAAQMVADLTNPIKFYAAFSMSMKKMGRIDVLTGSKGNIRKQCRSAS |
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| Function | Peroxidase 24 [UniProtKB/Swiss-Prot:Q9ZV04] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0011480 | OsARC_01g0011480.01 | Chr01 | 9230528 | 9233045 | + | NAM | ||
| CDS seq | ATGGATTTGGCGTGGTGGTTCGCGGTGGCCGTGGTGGTGTGCGGCCTTGTGGGGGGCGGCAGCGCCGGGCTGCTGGAGACCAACCCGGGTTTGGCGTACAACTTCTACCAGAAGTCGTGCCCCAACGTGGACTCCATCGTCCGCAGCGTCACCTGGGCGCAGGTCGCCGCCAACCCGGCGCTCCCCGGCCGCCTCCTCCGCCTCCACTTCCATGACTGCTTCGTCCAGGGGTGCGACGCGTCGATCTTGCTGGACAACGCCGGGAGCGAGAAGACGGCGGGGCCGAACCTATCGGTGGGGGGATACGAGGTGATCGACGCCATCAAGACGCAGCTGGAGCAGGCGTGCCCCGGGGTGGTGTCGTGCGCGGACATCGTGGCGCTCGCCGCGCGCGACGCCGTGTCGTACCAGTTCAAGGCGTCGCTGTGGCAGGTGGAGACCGGGAGGCGCGACGGGCCCGTGTCTCTGGCGTCCAACACCGGCGCGCTGCCGTCGCCGTTCGCCGGGTTCAGCACGCTCCTCCAGAGCTTCGCCAACCGCGGGCTCAACCTGACCGACCTCGTCGCGCTCTCCGGCGCGCACACCATCGGCAAGGCCAGCTGCTCCAGCGTCACGCCGCGGCTGTACCAGGGGAACACCACCTCCCTCGACCCGCTGCTCGACTCCGCCTACGCCAAGGCGCTCATGTCGTCGTGCCCCAACCCGTCGCCGTCGTCGTCCACCATCGACCTCGACGTCGCCACGCCGCTCAAGTTCGACAGCGGTTACTACGCCAACCTGCAGAAGAAGCAGGGCGCGCTGGCGTCCGACGCCGCGCTCACCCAGAACGCCGCCGCGGCGCAGATGGTGGCAGACCTCACCAACCCGATCAAGTTCTACGCCGCGTTCTCCATGTCCATGAAGAAGATGGGACGCATCGACGTGCTCACCGGCAGCAAAGGGAATATCAGGAAGCAGTGCCGCTCCGCCTCCTGA
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| Protein seq | MDLAWWFAVAVVVCGLVGGGSAGLLETNPGLAYNFYQKSCPNVDSIVRSVTWAQVAANPALPGRLLRLHFHDCFVQGCDASILLDNAGSEKTAGPNLSVGGYEVIDAIKTQLEQACPGVVSCADIVALAARDAVSYQFKASLWQVETGRRDGPVSLASNTGALPSPFAGFSTLLQSFANRGLNLTDLVALSGAHTIGKASCSSVTPRLYQGNTTSLDPLLDSAYAKALMSSCPNPSPSSSTIDLDVATPLKFDSGYYANLQKKQGALASDAALTQNAAAAQMVADLTNPIKFYAAFSMSMKKMGRIDVLTGSKGNIRKQCRSAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 4.238905 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0270300 | RBH | 0.479337 | 0.000000 | 5.622303 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g16450 | RBH | 0.196668 | 0.000000 | 1.176304 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0270300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0011980 | RBH | 0.0 | 11.615199 | 4.626928 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013110 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0017600 | SBH | 0.0 | 7.704223 | 27.618616 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0011540 | RBH | 0.793058 | 178.564529 | 3.616356 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0156300 | RBH | 4.140874 | 45.980679 | 2.890688 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0011520 | RBH | 0.0 | 5.478718 | 0.464254 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0154000 | RBH | 5.297187 | 17.4563235 | 21.279728 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0011520 | RBH | 0.0 | 0.807066 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0011570 | RBH | 0.276365 | 57.990974 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0011500 | RBH | 0.0 | 70.465240 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0011650 | RBH | 0.0 | 3.465770 | 1.007761 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0011480 | RBH | 0.0 | 36.060589 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G011630 | RBH | 0.0 | 45.408928 | 2.613762 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0011480 | RBH | 0.0 | 20.234358 | 4.158488 |
