Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsARC_01g0010870 | OGI:01027630 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:8719678-8722121 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ATGCCGAGTTCATCTGTATGTCCTCTCCCTATGGCTGCCAAGACCAACATCGAGTTGCAACACGATTTTGAAGAATGGTAAGTTAGTTGCGAATTTGTCATAGTTCTGTCTAATATTTCAGATTTTATATGCCTGTTACTATTGTGTTCGTGCGTTAAATGAATTTGAAAAGATATTTTTGCGATCTATGTTAAGGACCATGTTAAAGTTTTACAATTTTTTTTCATGAATGTTAGTATACGTGATATCGATTAAAATACAAATTTGTCATAGTTCTGTCTAATATTTCAGATTTTATATGCCTGTTACTATTGTGTTCGTGCGTTAAATGAATTTGAAAAGATATTTTTGCGATCTATGTTAAGGACCATGTTAAAATTTTACAATTTTTTTTCATGAATTTTAGTATACGTGATATCGATTAAAATGAGAATCAGATGACATTGGCTGTAGTAGCACTTTTTTTACATAAAACATAGCATGTGAGTTTTATTACTTAATCTGCATTACTAAAAAATGCCTATACCATATCCTGAGCTGGGATCTTTATCTAAAATTATTTTTAGTCCCTTGCTGTAAATCAATCTCTCCCCACAGTAAACAAAGACCAAGTACATCTCTCCCCAGTAAAAGAGAAAAACAGTCCCGTCACGGCATATCATCTTGATCTACTAGAACCGATCTGGTTTAACGCATGCGGATCCTAATGATGTTAAAGAGAAAATATATTTTGTAAGGAGATATTTATGGCAAGAAGATCAAGGGATCAGAAAATATCACCATGTACAATGGCCAATAGTGTGCTCTCCAAAAGAGCAAACAATGAACCATATTAATATTAATGTGTATGATTTTAAATATAAAAGATGAAGCACGAAATTTCTGTGCTAATTATACACTAAAAATGATATCAATACCTTGTTTTTGTGCTAATTATAAGTTTCAGTAGCTTGTTTTTAGGATATCAGTACCTTAGCTTGTTTTAGTTACAATTGCAGCAGTGGTGGATCCAACATAAACAATTTAGTTATGGTGAAACTATAATGTTCTTGCTTTCTATACAGGGGAGTGGAATCTCGTCCTCCTGGTGGGTTCGTTAATCTTATCAATGCCCCATCAAACCATATGCATCATGTCGCCGAAGGGAGTCCATCACAGCCTATCAATGTTGAGAATGGAGATATCTCTAGGACTAAGAAACGCTTATTATGGACGAACGATGAAGACTTGAGATTGGTAAGTGGCCTGTGTGAGTTATTTATTTGTCAATGTGATGTACATCACTCACATTACTAACACCAGTAAACATCTTTTTCCTAAAAATTGCAGATCAGCGCCTGGCTGAACAACTCAAATGATTCTATAGAATCAAATTTCAAGAAGAATGATAAATATTGGGGCGATGTTGCTGCAGCTTACAACAGCACTACCCCAAAAAGCCGGGTTAGGCAAGTTAAGCAAGTTAAGGATCGTTTTGGTAAAATTAAGAAGAAGGTTGGGAATTTTTGTTGCTCTTGGAAGGAGGCTAATTCATTATATGCTAGTGGGGAGTCTCATGATGATCTGATGGCTAAGGCAGTGAAAATGTATGAGAATGATTTCAAGGATGGTCCATTCTTGTTTATGCCAATTCACCCGTGGTGACTACAAAGTCCCAACAATTATCCTTGAAGCAGTTGCTTCACATGACCTTTGGATTTAGCATGCTTTCTTTGGTGTCGCTGGTTCTAACAACGACATCAACGTGCCGAATCAGTCCCCTCTATTCCTTGAACAAGTTAGAGGGGAGGCTCCTCGGGTTCATTTTTCTGTTAACGGGAATGAGTATAACAATGGGTATTACCTTGCTGATGGTATATACCCATATTGGGCTAGCTTCATAAAATCTATATCACTTCCACAAACAGAGAAGCATAAATTGTTTGCTAAACGTCAAGAAGGGGCAAGGAAAGATGTGGAGCGGGCTTTTGGAGTGTTGCAAGCCCGTTTCAACATTGTGCGCCGTCCAGCGAAGAAGTGGAAACGGAAGAGTGTTGGGAAAATCATGTTAGCTTGTGTGATTCTCCACAATATGATTGTTGAAGATGAGAGAGAGGATGCGATATGTGACATTGACCTCAATAGAATTCCTAGGACATCAATAGTCCTACCTCCTGAAGTAACTTCTGGTGATAATCCATGTTTTACTGATGTGCTACGTAGAAAATCTACTATTCGTGCTCGTTCTGTGCATACCCAACTGAAAACTGATTTAATTGAGCATATTTGGCATCAGTTTAGACATAGGCAACATGCATAAACATGGTAGGGTAATAAGCATGTGGTTTCTTTGCCTTTTATTTGCCGTGTGTAGATTATATCAATTAACCCTTGTGTCTAATTTATTTCAGGAACATGCTCTGCTCAGTATGTCCAAATCATGGTGCTGCACTTCTCAAAGGTAG
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CDS seq | ATGCCGAGTTCATCTGTATGTCCTCTCCCTATGGCTGCCAAGACCAACATCGAGTTGCAACACGATTTTGAAGAATGGGGAGTGGAATCTCGTCCTCCTGGTGGGTTCGTTAATCTTATCAATGCCCCATCAAACCATATGCATCATGTCGCCGAAGGGAGTCCATCACAGCCTATCAATGTTGAGAATGGAGATATCTCTAGGACTAAGAAACGCTTATTATGGACGAACGATGAAGACTTGAGATTGGAACATGCTCTGCTCAGTATGTCCAAATCATGGTGCTGCACTTCTCAAAGGTAG |
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Protein seq | MPSSSVCPLPMAAKTNIELQHDFEEWGVESRPPGGFVNLINAPSNHMHHVAEGSPSQPINVENGDISRTKKRLLWTNDEDLRLEHALLSMSKSWCCTSQR |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsARC_01g0010870 | OsARC_01g0010870.01 | Chr01 | 8719678 | 8722121 | + | NAM | ||
CDS seq | ATGCCGAGTTCATCTGTATGTCCTCTCCCTATGGCTGCCAAGACCAACATCGAGTTGCAACACGATTTTGAAGAATGGGGAGTGGAATCTCGTCCTCCTGGTGGGTTCGTTAATCTTATCAATGCCCCATCAAACCATATGCATCATGTCGCCGAAGGGAGTCCATCACAGCCTATCAATGTTGAGAATGGAGATATCTCTAGGACTAAGAAACGCTTATTATGGACGAACGATGAAGACTTGAGATTGGAACATGCTCTGCTCAGTATGTCCAAATCATGGTGCTGCACTTCTCAAAGGTAG
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Protein seq | MPSSSVCPLPMAAKTNIELQHDFEEWGVESRPPGGFVNLINAPSNHMHHVAEGSPSQPINVENGDISRTKKRLLWTNDEDLRLEHALLSMSKSWCCTSQR |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0527900 | SBH | 0.0 | 0.0 | 1.001779 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g15700 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os01g0373400 | SBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0011370 | RBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0011020 | RBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0011360 | RBH | 0.0 | 0.0 | 0.000000 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0010920 | RBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0148000 | RBH | 0 | 0 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0010910 | RBH | 0.0 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0145800 | RBH | 0 | 0 | 0 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0010920 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0010950 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0010890 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0011040 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0010880 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G011030 | RBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0010890 | RBH | 0.0 | 0.0 | 0.0 |