Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0007260 | OGI:01018780 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:5619405-5621787 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATACAAACACCCAGCACAACAATTTTAGGGTTTCCTCCCCTACTCCTACAAAGCTCCTTCCCCGCCGCCGCACGAGCAACACTAAACCCCCCATCTCCGCCGCTCCCGCCTCCCCCTCGCCGCCGCCGCCTCCCAGATCTCGCCATGGTGAGAGGCGCGCCGCCTTGCCGTCGGCGACGTCTTCTCCTCGATTCGTTCTTCTGTCCGCTCGGGCGCGCGTGGTTTTGATGCGTTTTCTTTTGGTTGGTTTCTGTGCTCGCAGGCGTCGGAGAAGAAGCAGGCGAACCCGATGCGGGAGATCAAGGTGCAGAAGCTTGTCCTCAACATCTCCGTCGGCGAGAGCGGAGATCGCCTCACCCGCGCCTCGAAGGTAATAATCACGATGCACCTGTTCATGTCATGTCAGATTCGGCTTGGTTTAGTCATGTAGAGCTGTACGGTTTGTTGGTTTCAGATAGGCTGAGTGCAATGGTGAGCTTTCCAGTCCGGATTGTGTAGCGGCTAGCTATTGTTTGGTTCTGGGCATTTTTATTCTTTGATTGATGTGTGTCCAATCTAGCTGTTGTCTGGTTGCTCGTGGATGGTTTATAAAGTTGTGTTACTGATGCTGCTAGCATGAAGCCATTACGATTAGAAGCTGGTTTGGACTTTCAATTTATTCCATTTGTCGAATTTGTAGATTGGGCATGATTAGTCCAGCCTCATTGGCCTCAAATGAACATTTTGTTTTGACTTTGAGTTTTATGCATCATGTTTTCGATCGTCCATACTCAAATGTATGTAAATTCTGCTGTTTGTTCTGTTAGGTGCTGGAGCAGCTGAGTGGGCAGTCACCGGTGTTCTCCAAGGGTAAATTCTGAAGTCTGGCCTGTTATTATCAGTGGTATGTGGTTTATTGCTGGCTTTCAGACTTGGAGTGACGATGATGCGATATTGCAGCGAGGTACACTGTGAGGTCGTTCGGCATCCGGCGTAATGAGAAGATCGCGTGCTACGTGACAGTGCGTGGTGAGAAGGCAATGCAGCTCCTGGAGAGTGGCCTGAAGGTGAAGGAGTACGAGCTGCTGAGGAGGAACTTCAGTGAGACTGGATGCTTTGGTTTTGGTATCCAGGAGCACATTGATCTTGGCATCAAGTAAGATTATATAATCCCATAATCTTGTATTATTTCAATGTAGAGCATTTGTTACTAAACTTCCTTTTCAACGCCCAAATGTAGTTACTTTTCTTCATGCGTAGATTTTTATTTGGGTGAAATGTAGTTTTTAAAATCAGTTTGATCTGTGTATTTACTACATTTGTTGTTTCTGTATCAAAATCCTCACTTCAAATCTCAAATGCTACTCATCTTTCAACATTTGTAATGTTTGATGTATAACAGAAACAGTCGTGCTATGCATTGGTTCCTAAATTTTGTTCAGTGTATGTTTCATGCGACGTAGTTGATCATCCAATGTTGCACTAGTGTGCTAGCCTCTTGGACTCGTAGCAGGTTATTGAGTATCTTCTTTTACTACGATATGCTCTTGCTTTTAGTACGATATGCTCTCGTGCACTGTTGCAAAATGTTTGCTAGTGTTTTCCAGCTAATGTATCATTGTATTGTTATTGTTTGATATGTTCTTGGAATCCCATGTTAACTAATTATATTCACAGTATTTGTCAAGGCACATTGTTCTATTGATAGTAGTTCCTTGATGTACATAGACCTGCTGACACATTGTCTGTTTTTTTTGTTGACTGCACACTAACCCCTCAATATCACCCCATCATCATCATTGAATGAAGTTATGTATTCACAAGTAAATTGACCTATCTGTTGCCTTTCAGGTATGACCCATCCACTGGTATTTACGGTATGGACTTCTACGTCGTTCTTGAGCGTGCTGGGTACCGTGTTGCGCGGCGCCGTAGGTGCAAGTCCCGTGTTGGTATCCAGCACAGGGTCACCAAGGAGGATGCCATGAAGTGGTTCCAGGTCAAGTACGAGGGTGTCATCCTCAACAAGGCCCAAGCCAACACCTCCTAAGCGTCACTAGTGCCTAGTTCTCTTTAGAACTTGAGTTATTTGGATGTTGGATTTGTATGCTTCTTAAAACTAAAGATGTTTTGTTATTTTGTCAACTTTGAGTTGGATCAGTTTTGGTGGTATGTACTTTCATCTTAATGCTCAGATCTATTTACTCTCTTAGCAGAGATAGATATATGATTTGACATATGCTACGAACTGCTGTCAATGTTGATAAAATGAAAAGAGAATGGTTTAGAAAAAGAAAATGTCACTACAGATGTTTCTTTGGCAATGATCCAATAAATGTAACTCAGAAAGTTCAAACCCTTCTGGCAATTTAGTAGAATACCAGGAATCCCCATGGTAATCGTG
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| CDS seq | ATGGCGTCGGAGAAGAAGCAGGCGAACCCGATGCGGGAGATCAAGGTGCAGAAGCTTGTCCTCAACATCTCCGTCGGCGAGAGCGGAGATCGCCTCACCCGCGCCTCGAAGGTGCTGGAGCAGCTGAGTGGGCAGTCACCGGTGTTCTCCAAGGCGAGGTACACTGTGAGGTCGTTCGGCATCCGGCGTAATGAGAAGATCGCGTGCTACGTGACAGTGCGTGGTGAGAAGGCAATGCAGCTCCTGGAGAGTGGCCTGAAGGTGAAGGAGTACGAGCTGCTGAGGAGGAACTTCAGTGAGACTGGATGCTTTGGTTTTGGTATCCAGGAGCACATTGATCTTGGCATCAAGTATGACCCATCCACTGGTATTTACGGTATGGACTTCTACGTCGTTCTTGAGCGTGCTGGGTACCGTGTTGCGCGGCGCCGTAGGTGCAAGTCCCGTGTTGGTATCCAGCACAGGGTCACCAAGGAGGATGCCATGAAGTGGTTCCAGGTCAAGTACGAGGGTGTCATCCTCAACAAGGCCCAAGCCAACACCTCCTAA
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| Protein seq | MASEKKQANPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQANTS |
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| Function | 60S ribosomal protein L11 [UniProtKB/Swiss-Prot:Q0DK10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0007260 | OsARC_01g0007260.01 | Chr01 | 5619405 | 5621787 | + | NAM | ||
| CDS seq | ATGGCGTCGGAGAAGAAGCAGGCGAACCCGATGCGGGAGATCAAGGTGCAGAAGCTTGTCCTCAACATCTCCGTCGGCGAGAGCGGAGATCGCCTCACCCGCGCCTCGAAGGTGCTGGAGCAGCTGAGTGGGCAGTCACCGGTGTTCTCCAAGGCGAGGTACACTGTGAGGTCGTTCGGCATCCGGCGTAATGAGAAGATCGCGTGCTACGTGACAGTGCGTGGTGAGAAGGCAATGCAGCTCCTGGAGAGTGGCCTGAAGGTGAAGGAGTACGAGCTGCTGAGGAGGAACTTCAGTGAGACTGGATGCTTTGGTTTTGGTATCCAGGAGCACATTGATCTTGGCATCAAGTATGACCCATCCACTGGTATTTACGGTATGGACTTCTACGTCGTTCTTGAGCGTGCTGGGTACCGTGTTGCGCGGCGCCGTAGGTGCAAGTCCCGTGTTGGTATCCAGCACAGGGTCACCAAGGAGGATGCCATGAAGTGGTTCCAGGTCAAGTACGAGGGTGTCATCCTCAACAAGGCCCAAGCCAACACCTCCTAA
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| Protein seq | MASEKKQANPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQANTS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.248179 | 5.323066 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0205500 | RBH | 6.411821 | 4.778243 | 15.460777 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g10820 | RBH | 5.180185 | 4.596479 | 4.497075 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0205500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0007770 | RBH | 1.963054 | 60.950958 | 10.324612 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0007410 | RBH | 0.235324 | 31.573040 | 7.549445 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0007740 | RBH | 2.636818 | 79.622612 | 25.180283 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0007040 | RBH | 1.016626 | 6.063046 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0007410 | RBH | 16.199852 | 127.719604 | 38.464767 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0094800 | RBH | 74.211548 | 76.981945 | 85.5909655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0007320 | RBH | 1.666552 | 8.419974 | 4.270289 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0094900 | RBH | 69.428379 | 84.7256925 | 189.093468 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0007180 | RBH | 0.918674 | 1.110192 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0007370 | RBH | 1.301672 | 92.771362 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0007370 | RBH | 11.480171 | 59.892769 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0007370 | RBH | 1.941100 | 9.701195 | 3.126401 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0007290 | RBH | 0.344216 | 49.124496 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G007380 | RBH | 1.329411 | 66.432739 | 10.670709 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007190 | RBH | 4.021594 | 98.656586 | 38.059948 |
