Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0004630 | OGI:01012860 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:3392975-3393886 | ||||||||
| Gene Symbol | OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61, OsMYB61a, MYB61a | ||||||||||
| DNA seq | ATGATCATGGGGAGAGCAGTGGAGCAGCAGCAGGGTGGATGCTGCTCGGAGAAGAAGAAGAAGCTGAGGAAAGGGCTATGGTCGCCGGAGGAGGACGAGCGGCTGGCGACGCACATCGCGCGGTTCGGCGTCAGCTGCTGGAGCTCGGTGCCCGACCTCGCCGGGCTGCAGCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCCGCTTCTCCCACCACGAGGAGGAGCTCATCTTGGCTCTCCATGACAAGCTCGGCAACAGGTAGCTAGATTATTGCTCGATTAATTGTTTGCTGGATTAATCATGAAACGATTGATTTGATCAATGGAGTTCGTGTTCATCGTCCGTGCGTGTTGCCGTGTTGTGCAGCTGGTCACAGATCGCGGCGAGGCTGCCGGGGAGGTCGGACAACGAGATCAAGAACTTCTGGAACGCGCGGCTGCGCAAGAAGCTCCGGCAGACGGAGTCGTCGTCGTCGGCGACGACGGCGGCGGGGGCGGCGGCGACCGGACACCGCCGCGGCGAGGCTGACCGGAGTCGACCGCCGCCGCCGCCGCCGCCGCCGCCTGCATCGTTCAACACCTTCTCTCACGACGACCGGACGACTCCTGCTCCTGCCGCCCACATTGCCGCCGCCGCCGCCGTCGAAGCACCCGCAGCGATGACGACGACGGGCGGCGCCGTCGGCGGCGGTGTTCTCGTGGACAACAGTGGTGGTCACCGTGATGCGGTGGCGGAGGCGGCGCGGGGACACGTCGGCGGCGGCGACGACGATGGCTTCTTGGCCGTGCTGCTTGGGGAGTACTACCTCGACGCCGGCGGCCACGGCGACGGATTCAGCTTCTTGGGCGGCGGCGGCGGCGGCCACGTGTTCAGCTAA
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| CDS seq | ATGATCATGGGGAGAGCAGTGGAGCAGCAGCAGGGTGGATGCTGCTCGGAGAAGAAGAAGAAGCTGAGGAAAGGGCTATGGTCGCCGGAGGAGGACGAGCGGCTGGCGACGCACATCGCGCGGTTCGGCGTCAGCTGCTGGAGCTCGGTGCCCGACCTCGCCGGGCTGCAGCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCCGCTTCTCCCACCACGAGGAGGAGCTCATCTTGGCTCTCCATGACAAGCTCGGCAACAGCTGGTCACAGATCGCGGCGAGGCTGCCGGGGAGGTCGGACAACGAGATCAAGAACTTCTGGAACGCGCGGCTGCGCAAGAAGCTCCGGCAGACGGAGTCGTCGTCGTCGGCGACGACGGCGGCGGGGGCGGCGGCGACCGGACACCGCCGCGGCGAGGCTGACCGGAGTCGACCGCCGCCGCCGCCGCCGCCGCCGCCTGCATCGTTCAACACCTTCTCTCACGACGACCGGACGACTCCTGCTCCTGCCGCCCACATTGCCGCCGCCGCCGCCGTCGAAGCACCCGCAGCGATGACGACGACGGGCGGCGCCGTCGGCGGCGGTGTTCTCGTGGACAACAGTGGTGGTCACCGTGATGCGGTGGCGGAGGCGGCGCGGGGACACGTCGGCGGCGGCGACGACGATGGCTTCTTGGCCGTGCTGCTTGGGGAGTACTACCTCGACGCCGGCGGCCACGGCGACGGATTCAGCTTCTTGGGCGGCGGCGGCGGCGGCCACGTGTTCAGCTAA
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| Protein seq | MIMGRAVEQQQGGCCSEKKKKLRKGLWSPEEDERLATHIARFGVSCWSSVPDLAGLQRCGKSCRLRWMNYLRPDLKRGRFSHHEEELILALHDKLGNSWSQIAARLPGRSDNEIKNFWNARLRKKLRQTESSSSATTAAGAAATGHRRGEADRSRPPPPPPPPPASFNTFSHDDRTTPAPAAHIAAAAAVEAPAAMTTTGGAVGGGVLVDNSGGHRDAVAEAARGHVGGGDDDGFLAVLLGEYYLDAGGHGDGFSFLGGGGGGHVFS |
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| Function | Transcription factor MYB86 [UniProtKB/Swiss-Prot:Q8LPH6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0004630 | OsARC_01g0004630.01 | Chr01 | 3392975 | 3393886 | + | NAM | ||
| CDS seq | ATGATCATGGGGAGAGCAGTGGAGCAGCAGCAGGGTGGATGCTGCTCGGAGAAGAAGAAGAAGCTGAGGAAAGGGCTATGGTCGCCGGAGGAGGACGAGCGGCTGGCGACGCACATCGCGCGGTTCGGCGTCAGCTGCTGGAGCTCGGTGCCCGACCTCGCCGGGCTGCAGCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCCGCTTCTCCCACCACGAGGAGGAGCTCATCTTGGCTCTCCATGACAAGCTCGGCAACAGCTGGTCACAGATCGCGGCGAGGCTGCCGGGGAGGTCGGACAACGAGATCAAGAACTTCTGGAACGCGCGGCTGCGCAAGAAGCTCCGGCAGACGGAGTCGTCGTCGTCGGCGACGACGGCGGCGGGGGCGGCGGCGACCGGACACCGCCGCGGCGAGGCTGACCGGAGTCGACCGCCGCCGCCGCCGCCGCCGCCGCCTGCATCGTTCAACACCTTCTCTCACGACGACCGGACGACTCCTGCTCCTGCCGCCCACATTGCCGCCGCCGCCGCCGTCGAAGCACCCGCAGCGATGACGACGACGGGCGGCGCCGTCGGCGGCGGTGTTCTCGTGGACAACAGTGGTGGTCACCGTGATGCGGTGGCGGAGGCGGCGCGGGGACACGTCGGCGGCGGCGACGACGATGGCTTCTTGGCCGTGCTGCTTGGGGAGTACTACCTCGACGCCGGCGGCCACGGCGACGGATTCAGCTTCTTGGGCGGCGGCGGCGGCGGCCACGTGTTCAGCTAA
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| Protein seq | MIMGRAVEQQQGGCCSEKKKKLRKGLWSPEEDERLATHIARFGVSCWSSVPDLAGLQRCGKSCRLRWMNYLRPDLKRGRFSHHEEELILALHDKLGNSWSQIAARLPGRSDNEIKNFWNARLRKKLRQTESSSSATTAAGAAATGHRRGEADRSRPPPPPPPPPASFNTFSHDDRTTPAPAAHIAAAAAVEAPAAMTTTGGAVGGGVLVDNSGGHRDAVAEAARGHVGGGDDDGFLAVLLGEYYLDAGGHGDGFSFLGGGGGGHVFS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.118348 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0285300 | SBH | 0.0 | 0.0 | 3.076899 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g07450 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0285300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005030 | RBH | 0.0 | 3.304958 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004730 | RBH | 0.0 | 1.116692 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0004970 | RBH | 0.0 | 1.391671 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004850 | RBH | 0.0 | 3.029875 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0062600 | RBH | 0.010636 | 1.1026285 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004780 | RBH | 0.0 | 0.272322 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0063700 | RBH | 0 | 0.0299805 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0004610 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004790 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004850 | RBH | 0.0 | 7.879553 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004810 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0004780 | RBH | 0.0 | 0.786264 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004850 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004740 | RBH | 0.0 | 0.000000 | 0.0 |
