Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0638300 | OGI:12070370 | 11/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:27359469-27361454 | ||||||||
| Gene Symbol | PTR | ||||||||||
| DNA seq | GAGGAGGAAGAAGAGATTATAGTGTTTTTGCGTCTGATACATACAGATATTATACTCCTACTGTGTATGGTGATGCATCGATCGATGACGTACCTCTAAATCTATCTACCATCTACAGTAGAGTGATCGATTGTGATAATAAAATTAATTAAACCTTGGAGGCTATGGTGTTGGCGGTTCCGGGCTGATGATGATGATAATCCGGCAGCTCGACGTGGTCGGCGATGGTGGTGTTCTTGAACCTGTACCAGCGGGCGCAGAGGAGGAAGTAGCAGACGTTGGCCGCCGCGATGGCCGCGACGGTTAGGTAGAAGAGGTCGAGGCGGGCGTGGTTCAGATCCTGCGCCAGCCACCCCGTGGTCCGGTGCACCGCCGCCACCATGAAGCCGCTCGCGTAGTTGGCCAGCGCGAACGCCAGGAAGAAGAGCGCCCCCGCCACGCTCCTCATGTTCTCCGGGAACTGCCTGTAGTACAGCTCCGTCTGCCCGATCGCCGCGAACGCCTCCGACATCCCCGCCGCCACCTGCTGCGGCACCAGCCACAGGAACGACATCTTCACTCCCACCGCGCCCAGCCGGCGCCGCCGCTGCTCCACCGCCGCCGCCACCACCATCGTCGCCACCGACAGCACCAGCCCCACCCCGATGCGCTGCAGCTGGCTGATCCCGCCCTCCTTCCCCGTCACCCGCCGCAGCGCCGGCACCACCACCCGGTCGTACACCGGGATCCACACCGTCATCGCCATCATGTTGAACACCACCATCGACCCCGCCGGCACCTCGAACGCCCACCACCTCGTCAGCCGCCGGTCCATCTGCAGCGCCTGGAGCACCACGAACGTGCCCAGCTGCGTTACCACGATGAAGTACACGATCCCCGCCGACCACACCGGGATGATCCGCGCCAGGCACTTCACCTCCTCCACCTGCTGCACCGTGCACAGCCGCCACGGGCTCGATCTCGACTCCGGCGTCACCACGGCGGCCTTGTCCAGGCACCGGAACTGGTCCGTGTACGCGATCTTGGCCACCAGCTTGCTCTGGTGCGGCGGGTCGAACAGGTCGTCGGCGGAGGCCGGTGCGGGGACGCGGCGCTTGCGGACGGCGGCGACGATGACCCGGGCGAAGCTGGTGAAGGGGCTGCCCTCGGGGCGGACGCGGACGTAGAGGCGGGTGCCCATGAAGAAGAGCGCGCAGGAGATGGCCATGAGGGCGGCGGGGACGGCGAGTCCGATCGCCCAGCTGACGTTGCTCTGGAGGTAGATGATGAGGGTGGCGGAGAGCATCATGGCGACGGTGAAGGTGAAGTAGTACCAGTTGAAGAAGCTGGCAATGCCGCGGCGGCCGGAGTCGGTGCGCGGGTCGAACTGGTCGGCGCCGAAGGCGAGGTTGCAGGGGCGGATGCCGCCGGCGCCGACGACGAGGAAGGCGAAGGCGGCGAGGAGAGCGGCGAGCTGGCCGTGTGTGGGGCCCTGGCACGACGACGAGGAAGAGGAGGCAGTGCAAGGTGGGGGGTGGAGAGATGGGATGGCGGCGGTGAGGGTAAGCACAAGCATGCCGAGGCAGGAGGCGAGGGAGGCGGCGGCGATGGTGGTGTAGCGGCCGAGGAAGGTGTCGGAGAGGAAGGCGCCGAGGAGGGGGGCGAGGTTGGTGGTGCCGGAGAAGAAGTTGAGGAGGGTGGCGGCGCGGACGCTGGGGAGGTGGTAGACGGTGGTGAGGTACACCAGCAGGTTGGCGGTGGTGCCGATGGTGCCCAGCTTCTCGAACGTCTCGTTCCCTATCACGTATGGCATCGACTTCCATCCTCGGTACCGGACGCTGCTGATCACCTCCTCCTCCTCCTCCTCCTCGCCGCCGGTGATCTTCTTCTCGCCCGGCTGCTGCTGCTTCTCCATGGCTGCTGCTGCGTCCATGATAGATCTTGATCTTGATCGAGTAGAGTAGAGTAGCTAGCTAGATAGAGGAGCTTGCATGCAGGGAGGAGTGC
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| CDS seq | ATGGACGCAGCAGCAGCCATGGAGAAGCAGCAGCAGCCGGGCGAGAAGAAGATCACCGGCGGCGAGGAGGAGGAGGAGGAGGAGGTGATCAGCAGCGTCCGGTACCGAGGATGGAAGTCGATGCCATACGTGATAGGGAACGAGACGTTCGAGAAGCTGGGCACCATCGGCACCACCGCCAACCTGCTGGTGTACCTCACCACCGTCTACCACCTCCCCAGCGTCCGCGCCGCCACCCTCCTCAACTTCTTCTCCGGCACCACCAACCTCGCCCCCCTCCTCGGCGCCTTCCTCTCCGACACCTTCCTCGGCCGCTACACCACCATCGCCGCCGCCTCCCTCGCCTCCTGCCTCGGCATGCTTGTGCTTACCCTCACCGCCGCCATCCCATCTCTCCACCCCCCACCTTGCACTGCCTCCTCTTCCTCGTCGTCGTGCCAGGGCCCCACACACGGCCAGCTCGCCGCTCTCCTCGCCGCCTTCGCCTTCCTCGTCGTCGGCGCCGGCGGCATCCGCCCCTGCAACCTCGCCTTCGGCGCCGACCAGTTCGACCCGCGCACCGACTCCGGCCGCCGCGGCATTGCCAGCTTCTTCAACTGGTACTACTTCACCTTCACCGTCGCCATGATGCTCTCCGCCACCCTCATCATCTACCTCCAGAGCAACGTCAGCTGGGCGATCGGACTCGCCGTCCCCGCCGCCCTCATGGCCATCTCCTGCGCGCTCTTCTTCATGGGCACCCGCCTCTACGTCCGCGTCCGCCCCGAGGGCAGCCCCTTCACCAGCTTCGCCCGGGTCATCGTCGCCGCCGTCCGCAAGCGCCGCGTCCCCGCACCGGCCTCCGCCGACGACCTGTTCGACCCGCCGCACCAGAGCAAGCTGGTGGCCAAGATCGCGTACACGGACCAGTTCCGGTGCCTGGACAAGGCCGCCGTGGTGACGCCGGAGTCGAGATCGAGCCCGTGGCGGCTGTGCACGGTGCAGCAGGTGGAGGAGGTGAAGTGCCTGGCGCGGATCATCCCGGTGTGGTCGGCGGGGATCGTGTACTTCATCGTGGTAACGCAGCTGGGCACGTTCGTGGTGCTCCAGGCGCTGCAGATGGACCGGCGGCTGACGAGGTGGTGGGCGTTCGAGGTGCCGGCGGGGTCGATGGTGGTGTTCAACATGATGGCGATGACGGTGTGGATCCCGGTGTACGACCGGGTGGTGGTGCCGGCGCTGCGGCGGGTGACGGGGAAGGAGGGCGGGATCAGCCAGCTGCAGCGCATCGGGGTGGGGCTGGTGCTGTCGGTGGCGACGATGGTGGTGGCGGCGGCGGTGGAGCAGCGGCGGCGCCGGCTGGGCGCGGTGGGAGTGAAGATGTCGTTCCTGTGGCTGGTGCCGCAGCAGGTGGCGGCGGGGATGTCGGAGGCGTTCGCGGCGATCGGGCAGACGGAGCTGTACTACAGGCAGTTCCCGGAGAACATGAGGAGCGTGGCGGGGGCGCTCTTCTTCCTGGCGTTCGCGCTGGCCAACTACGCGAGCGGCTTCATGGTGGCGGCGGTGCACCGGACCACGGGGTGGCTGGCGCAGGATCTGAACCACGCCCGCCTCGACCTCTTCTACCTAACCGTCGCGGCCATCGCGGCGGCCAACGTCTGCTACTTCCTCCTCTGCGCCCGCTGGTACAGGTTCAAGAACACCACCATCGCCGACCACGTCGAGCTGCCGGATTATCATCATCATCAGCCCGGAACCGCCAACACCATAGCCTCCAAGGTTTAA
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| Protein seq | MDAAAAMEKQQQPGEKKITGGEEEEEEEVISSVRYRGWKSMPYVIGNETFEKLGTIGTTANLLVYLTTVYHLPSVRAATLLNFFSGTTNLAPLLGAFLSDTFLGRYTTIAAASLASCLGMLVLTLTAAIPSLHPPPCTASSSSSSCQGPTHGQLAALLAAFAFLVVGAGGIRPCNLAFGADQFDPRTDSGRRGIASFFNWYYFTFTVAMMLSATLIIYLQSNVSWAIGLAVPAALMAISCALFFMGTRLYVRVRPEGSPFTSFARVIVAAVRKRRVPAPASADDLFDPPHQSKLVAKIAYTDQFRCLDKAAVVTPESRSSPWRLCTVQQVEEVKCLARIIPVWSAGIVYFIVVTQLGTFVVLQALQMDRRLTRWWAFEVPAGSMVVFNMMAMTVWIPVYDRVVVPALRRVTGKEGGISQLQRIGVGLVLSVATMVVAAAVEQRRRRLGAVGVKMSFLWLVPQQVAAGMSEAFAAIGQTELYYRQFPENMRSVAGALFFLAFALANYASGFMVAAVHRTTGWLAQDLNHARLDLFYLTVAAIAAANVCYFLLCARWYRFKNTTIADHVELPDYHHHQPGTANTIASKV |
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| Function | Protein NRT1/ PTR FAMILY 2.11 [UniProtKB/Swiss-Prot:Q9LV10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0638300 | Os12t0638300-01 | Chr12 | 27359469 | 27361454 | - | irgsp1_rep | ||
| CDS seq | ATGGACGCAGCAGCAGCCATGGAGAAGCAGCAGCAGCCGGGCGAGAAGAAGATCACCGGCGGCGAGGAGGAGGAGGAGGAGGAGGTGATCAGCAGCGTCCGGTACCGAGGATGGAAGTCGATGCCATACGTGATAGGGAACGAGACGTTCGAGAAGCTGGGCACCATCGGCACCACCGCCAACCTGCTGGTGTACCTCACCACCGTCTACCACCTCCCCAGCGTCCGCGCCGCCACCCTCCTCAACTTCTTCTCCGGCACCACCAACCTCGCCCCCCTCCTCGGCGCCTTCCTCTCCGACACCTTCCTCGGCCGCTACACCACCATCGCCGCCGCCTCCCTCGCCTCCTGCCTCGGCATGCTTGTGCTTACCCTCACCGCCGCCATCCCATCTCTCCACCCCCCACCTTGCACTGCCTCCTCTTCCTCGTCGTCGTGCCAGGGCCCCACACACGGCCAGCTCGCCGCTCTCCTCGCCGCCTTCGCCTTCCTCGTCGTCGGCGCCGGCGGCATCCGCCCCTGCAACCTCGCCTTCGGCGCCGACCAGTTCGACCCGCGCACCGACTCCGGCCGCCGCGGCATTGCCAGCTTCTTCAACTGGTACTACTTCACCTTCACCGTCGCCATGATGCTCTCCGCCACCCTCATCATCTACCTCCAGAGCAACGTCAGCTGGGCGATCGGACTCGCCGTCCCCGCCGCCCTCATGGCCATCTCCTGCGCGCTCTTCTTCATGGGCACCCGCCTCTACGTCCGCGTCCGCCCCGAGGGCAGCCCCTTCACCAGCTTCGCCCGGGTCATCGTCGCCGCCGTCCGCAAGCGCCGCGTCCCCGCACCGGCCTCCGCCGACGACCTGTTCGACCCGCCGCACCAGAGCAAGCTGGTGGCCAAGATCGCGTACACGGACCAGTTCCGGTGCCTGGACAAGGCCGCCGTGGTGACGCCGGAGTCGAGATCGAGCCCGTGGCGGCTGTGCACGGTGCAGCAGGTGGAGGAGGTGAAGTGCCTGGCGCGGATCATCCCGGTGTGGTCGGCGGGGATCGTGTACTTCATCGTGGTAACGCAGCTGGGCACGTTCGTGGTGCTCCAGGCGCTGCAGATGGACCGGCGGCTGACGAGGTGGTGGGCGTTCGAGGTGCCGGCGGGGTCGATGGTGGTGTTCAACATGATGGCGATGACGGTGTGGATCCCGGTGTACGACCGGGTGGTGGTGCCGGCGCTGCGGCGGGTGACGGGGAAGGAGGGCGGGATCAGCCAGCTGCAGCGCATCGGGGTGGGGCTGGTGCTGTCGGTGGCGACGATGGTGGTGGCGGCGGCGGTGGAGCAGCGGCGGCGCCGGCTGGGCGCGGTGGGAGTGAAGATGTCGTTCCTGTGGCTGGTGCCGCAGCAGGTGGCGGCGGGGATGTCGGAGGCGTTCGCGGCGATCGGGCAGACGGAGCTGTACTACAGGCAGTTCCCGGAGAACATGAGGAGCGTGGCGGGGGCGCTCTTCTTCCTGGCGTTCGCGCTGGCCAACTACGCGAGCGGCTTCATGGTGGCGGCGGTGCACCGGACCACGGGGTGGCTGGCGCAGGATCTGAACCACGCCCGCCTCGACCTCTTCTACCTAACCGTCGCGGCCATCGCGGCGGCCAACGTCTGCTACTTCCTCCTCTGCGCCCGCTGGTACAGGTTCAAGAACACCACCATCGCCGACCACGTCGAGCTGCCGGATTATCATCATCATCAGCCCGGAACCGCCAACACCATAGCCTCCAAGGTTTAA
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| Protein seq | MDAAAAMEKQQQPGEKKITGGEEEEEEEVISSVRYRGWKSMPYVIGNETFEKLGTIGTTANLLVYLTTVYHLPSVRAATLLNFFSGTTNLAPLLGAFLSDTFLGRYTTIAAASLASCLGMLVLTLTAAIPSLHPPPCTASSSSSSCQGPTHGQLAALLAAFAFLVVGAGGIRPCNLAFGADQFDPRTDSGRRGIASFFNWYYFTFTVAMMLSATLIIYLQSNVSWAIGLAVPAALMAISCALFFMGTRLYVRVRPEGSPFTSFARVIVAAVRKRRVPAPASADDLFDPPHQSKLVAKIAYTDQFRCLDKAAVVTPESRSSPWRLCTVQQVEEVKCLARIIPVWSAGIVYFIVVTQLGTFVVLQALQMDRRLTRWWAFEVPAGSMVVFNMMAMTVWIPVYDRVVVPALRRVTGKEGGISQLQRIGVGLVLSVATMVVAAAVEQRRRRLGAVGVKMSFLWLVPQQVAAGMSEAFAAIGQTELYYRQFPENMRSVAGALFFLAFALANYASGFMVAAVHRTTGWLAQDLNHARLDLFYLTVAAIAAANVCYFLLCARWYRFKNTTIADHVELPDYHHHQPGTANTIASKV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0638300 | RBH | 10.590193 | 14.283925 | 1.468480 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g44110 | RBH | 7.068457 | 9.456318 | 0.377905 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0687000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0022250 | RBH | 1.683071 | 2.540770 | 3.475188 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0022330 | RBH | 0.504040 | 0.0 | 2.661386 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0022690 | RBH | 3.539762 | 1.249252 | 4.207969 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0021660 | SBH | 10.499086 | 0.0 | 6.198365 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0368700 | RBH | 11.527115 | 1.9926575 | 0.9134115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0401100 | RBH | 10.373641 | 0.2146475 | 0.0791205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0021780 | SBH | 1.032452 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0022030 | RBH | 1.403181 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0021880 | RBH | 10.849084 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0022000 | RBH | 2.265980 | 0.0 | 1.522580 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G021680 | RBH | 0.632689 | 0.0 | 3.503530 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0021410 | RBH | 4.690251 | 6.777990 | 1.578851 |
