Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0633501 | OGI:12010220 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:27151981-27152307 | ||||||||
| Gene Symbol | R2R3-MYB, MYB48/59, OsMYB48/59 | ||||||||||
| DNA seq | ATGGACGGCGGAGGACGACGAGCGGCTGCGGTCGTACATCCAGCAGCACGGCACCGGCGGCAACTGGATGGCCTCCGCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGCTCAACTACCTCCGCCCCGGCATCCGCCACGGCGCCTTCTCCGACCACGACGACCGCCTCATCCTCGCCCTCCACGCCGCCGTCGGCACCAGGCCGGTCCTCCTCCTCGCCGCCCACCAGCTGCACGTTGCTAGCACCAGTAGCGGCGGCATGCACGTCGGAGTCGGAGAAGAAGGACGCGGCTACGACGACGTCTTCGCCGCCGGTCATTCGTTGTAG |
||||||||||
| CDS seq | ATGGACGGCGGAGGACGACGAGCGGCTGCGGTCGTACATCCAGCAGCACGGCACCGGCGGCAACTGGATGGCCTCCGCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGCTCAACTACCTCCGCCCCGGCATCCGCCACGGCGCCTTCTCCGACCACGACGACCGCCTCATCCTCGCCCTCCACGCCGCCGTCGGCACCAGGCCGGTCCTCCTCCTCGCCGCCCACCAGCTGCACGTTGCTAGCACCAGTAGCGGCGGCATGCACGTCGGAGTCGGAGAAGAAGGACGCGGCTACGACGACGTCTTCGCCGCCGGTCATTCGTTGTAG |
||||||||||
| Protein seq | MDGGGRRAAAVVHPAARHRRQLDGLRRCGKSCRLRWLNYLRPGIRHGAFSDHDDRLILALHAAVGTRPVLLLAAHQLHVASTSSGGMHVGVGEEGRGYDDVFAAGHSL |
||||||||||
| Function | Transcription factor RAX1 [UniProtKB/Swiss-Prot:Q9FG68] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0633501 | Os12t0633501-00 | Chr12 | 27151981 | 27152307 | + | irgsp1_rep | ||
| CDS seq | ATGGACGGCGGAGGACGACGAGCGGCTGCGGTCGTACATCCAGCAGCACGGCACCGGCGGCAACTGGATGGCCTCCGCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGCTCAACTACCTCCGCCCCGGCATCCGCCACGGCGCCTTCTCCGACCACGACGACCGCCTCATCCTCGCCCTCCACGCCGCCGTCGGCACCAGGCCGGTCCTCCTCCTCGCCGCCCACCAGCTGCACGTTGCTAGCACCAGTAGCGGCGGCATGCACGTCGGAGTCGGAGAAGAAGGACGCGGCTACGACGACGTCTTCGCCGCCGGTCATTCGTTGTAG
More
|
|||||||
| Protein seq | MDGGGRRAAAVVHPAARHRRQLDGLRRCGKSCRLRWLNYLRPGIRHGAFSDHDDRLILALHAAVGTRPVLLLAAHQLHVASTSSGGMHVGVGEEGRGYDDVFAAGHSL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0633501 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g37970 | SBH | 0.593144 | 0.234538 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017680 | SBH | 1.223718 | 2.871046 | 2.081643 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017800 | SBH | 0.561746 | 2.002545 | 1.557791 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018160 | SBH | 2.764634 | 0.000000 | 2.165489 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0005200 | RBH | 0.000000 | 5.357787 | 9.053871 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0308800 | SBH | 4.142112 | 18.5201645 | 2.53917 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0340100 | SBH | 10.184259 | 27.6351365 | 10.9096775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0005000 | SBH | 0.0 | 0.231418 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017460 | SBH | 1.194736 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017400 | SBH | 0.000000 | 68.797737 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017430 | SBH | 1.333439 | 0.0 | 0.333523 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017320 | SBH | 1.382405 | 0.000000 | 0.776462 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016990 | SBH | 1.509915 | 62.827080 | 2.319820 |
