Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0586000 | OGI:12063330 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:24456516-24459081 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGTGTTCATTGGCATGGTTTAATACAAACCCCGGTATGATCATCTGTAAGTGCAAAGGGAGTTATAATTAGTATGTTGGTGAACTCATTCGGCTCAACGTAGCAACTTGTGTTCATGGTGCCAATTTTAATCAACATAACATTAGAACTTTCTTCGAATTTATTCGCCTTTTTCCTAATTGATCTGAGCAACCCCTTGGATTTTGCGTTAATTGTTTGCCATCAAGATCTGTTCACAAAAGACAGTTGTATTTGATCCTTTGCTGGTTTCTCTGGAAAGGTTTGCATGCTTTATTGTTTTTCATGGTGCTAACATATTTCGTTCTTGTTTCTGTAGGCTACTTCAGCGATAGAGTCTTCTTTGAGACGATCTCGCAGTCCGCAAATCTGGACACTATCAAGATGAAGCTATGGGAGCAGATCAGTGGAAACCTTGTGCTCGGTGCGTACAACCAGATCCCAGAATGGCAACTCAAGTTGGGGCCAAGGGACAAAGGACCTGTTCTTGTTATCCTTGATGATGTCTGGTCTCTCTCACAGCTAGAGGAGCTCATCTTCAAGTTCCCTGGGTGCAAGACACTTGTAGTATCAAGGTTCAAGTTCCCCTCGTTGGTCACCCGGACTTACGAAATGGAGTTGCTCGATGAGGAGGCGGCTCTTTCTGTCTTCTGTCGTGCTGCCTTTGATCAGGAGTCCGTTCCTCGGACCGCTGACAAGAAACTGGTTCGGCAGGTTGCTGCAGAGTGCAGAGGACTTCCTCTAGCACTGAAGGTTATCGGTGCGTCGTTGCGGGATCAGCCTCCTAAGATATGGTTGAGTGCGAAGAACCGGTTGTCGCGAGGAGAGACTATATCTGACTCTCATGAGACCAAACTCCTGGAGAGGATGGCCGCAAGCATCGAGTGCTTGTCAGGGAAGGTTAGAGAATGTTTCCTTGATCTGGGTTGCTTTCCGGAGGATAAGAAGATCCCACTGGATGTGTTGATCAATATATGGATGGAGATTCATGATCTTGATGAGCCGGATGCCTTCGCCATCTTGGTTGAGCTATCAAACAAGAATCTTCTCACCCTAGTTAATGATGCACAGTATGTACAGCTTGCCCTGTATTTCCTTTCAAAGCCTTTAATAATTTGGATGCGACAAAAGGACGGATTTGACATTTGGTTACTCTATGCAGGAACAAAGCCGGCGATTTGTACAGCAGCTACCATGACTTCTCGGTTACACAACATGATGTATTGAGGGATCTAGCGCTTCACATGAGTGGTCGTGATGCTCTGAACAACCGGAGACGGCTGGTGATGCCAAGAAGAGAAGAATCACTACCGAAGGATTGGCAGAGGAATAAGGACACTCCGTTCGAAGCTCAGATAGTTTCCATTCATACAGGTGATTCATTGGCTATTAACTACACTTTCATCTTTTTTTTTCTTGCTATGAGAAAAAAAAATACCATCTAATTTGTTTAACTGATGCTTAATCCTTCAAGGTAATACATAAAGTTCCATTTGTTATTAGTATTACCTGATCTTGTGAAATATTTCCCTTATTTAAAGTTCTATGGTAGTGTTACTTGCAATTATTTGTGTTTCCCCTTTGGACAAAATAATCTGACCAATTGGTTTCAATCTTCAGGTGAGATGAAAGAATCTGACTGGTTCCAGATGAGCTTCCCCAAGGCCGAAGTGCTTATCCTCAACTTCGCGTCAAGTGTATACTATCTCCCACCATTCATTGCAACCATGCAGAACTTGAAAGCCCTGGTGCTGATCAACTATGGCACCATCAGTGCAACCCTTGATAACCTATCCGCCTTCACCACGCTCAGTGACCTGAGGAGCCTTTGGCTTGAGAAGATCACACTTCCACCGCTACCAAAAACCACAATCCCACTGAAGAACCTGCGCAAGATATCCCTTGTCCTCTGTGAGCTGACCAACAGTCTGAGAGGATCAAAGGTGGATCTCTCGATGACATTCCCGCGCCTATCCAACCTCACCATTGACCACTGCATAGACCTGAAGGAGCTACCATCTAGCATATGTGAAATCAGTTCCCTGGAGAGCATCTCCATCTCAAACTGCCATGACCTCACAGAGCTTCCATATGAGCTGGGCAAGCTGCATTGCCTGAGCATCCTAAGGGTATACGCCTGCCCGGCTCTGTGGCGGCTCCCGCCTTCGGTATGCAGCCTGAAGAGGCTGAAATACCTCGACATTTCGCAGTGTGTCAACCTGACGGACCTCCCTGAGGAGCTCGGTCACCTGACAAGCCTGGAGAAGATCGACATGCGAGAATGCTCGCGACTGAGGAGCCTCCCGAGGTCGTCCTCATCGCTCAAGTCCCTCGGGCACGTCGTGTGCGACGAGGAGACGGCGTTGCTGTGGAGGGAAGCTGAGCAGGTCATCCCAGACCTCCGGGTTCAGGTAGCAGAAGAGTGTTATAACCTGGACTGGCTTGTAGACTGATGTTCCTGGATGCTTTTGGCTCCAAGCTCACCTTTGTACAGATGATGTGTATATTTTTCCCTGTCTAATACAGGATGGAGGAACAATCCACTCTGC
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| CDS seq | ATGATCATCTGCTACTTCAGCGATAGAGTCTTCTTTGAGACGATCTCGCAGTCCGCAAATCTGGACACTATCAAGATGAAGCTATGGGAGCAGATCAGTGGAAACCTTGTGCTCGGTGCGTACAACCAGATCCCAGAATGGCAACTCAAGTTGGGGCCAAGGGACAAAGGACCTGTTCTTGTTATCCTTGATGATGTCTGGTCTCTCTCACAGCTAGAGGAGCTCATCTTCAAGTTCCCTGGGTGCAAGACACTTGTAGTATCAAGGTTCAAGTTCCCCTCGTTGGTCACCCGGACTTACGAAATGGAGTTGCTCGATGAGGAGGCGGCTCTTTCTGTCTTCTGTCGTGCTGCCTTTGATCAGGAGTCCGTTCCTCGGACCGCTGACAAGAAACTGGTTCGGCAGGTTGCTGCAGAGTGCAGAGGACTTCCTCTAGCACTGAAGGTTATCGGTGCGTCGTTGCGGGATCAGCCTCCTAAGATATGGTTGAGTGCGAAGAACCGGTTGTCGCGAGGAGAGACTATATCTGACTCTCATGAGACCAAACTCCTGGAGAGGATGGCCGCAAGCATCGAGTGCTTGTCAGGGAAGGTTAGAGAATGTTTCCTTGATCTGGGTTGCTTTCCGGAGGATAAGAAGATCCCACTGGATGTGTTGATCAATATATGGATGGAGATTCATGATCTTGATGAGCCGGATGCCTTCGCCATCTTGGTTGAGCTATCAAACAAGAATCTTCTCACCCTAGTTAATGATGCACAGAACAAAGCCGGCGATTTGTACAGCAGCTACCATGACTTCTCGGTTACACAACATGATGTATTGAGGGATCTAGCGCTTCACATGAGTGGTCGTGATGCTCTGAACAACCGGAGACGGCTGGTGATGCCAAGAAGAGAAGAATCACTACCGAAGGATTGGCAGAGGAATAAGGACACTCCGTTCGAAGCTCAGATAGTTTCCATTCATACAGGTGAGATGAAAGAATCTGACTGGTTCCAGATGAGCTTCCCCAAGGCCGAAGTGCTTATCCTCAACTTCGCGTCAAGTGTATACTATCTCCCACCATTCATTGCAACCATGCAGAACTTGAAAGCCCTGGTGCTGATCAACTATGGCACCATCAGTGCAACCCTTGATAACCTATCCGCCTTCACCACGCTCAGTGACCTGAGGAGCCTTTGGCTTGAGAAGATCACACTTCCACCGCTACCAAAAACCACAATCCCACTGAAGAACCTGCGCAAGATATCCCTTGTCCTCTGTGAGCTGACCAACAGTCTGAGAGGATCAAAGGTGGATCTCTCGATGACATTCCCGCGCCTATCCAACCTCACCATTGACCACTGCATAGACCTGAAGGAGCTACCATCTAGCATATGTGAAATCAGTTCCCTGGAGAGCATCTCCATCTCAAACTGCCATGACCTCACAGAGCTTCCATATGAGCTGGGCAAGCTGCATTGCCTGAGCATCCTAAGGGTATACGCCTGCCCGGCTCTGTGGCGGCTCCCGCCTTCGGTATGCAGCCTGAAGAGGCTGAAATACCTCGACATTTCGCAGTGTGTCAACCTGACGGACCTCCCTGAGGAGCTCGGTCACCTGACAAGCCTGGAGAAGATCGACATGCGAGAATGCTCGCGACTGAGGAGCCTCCCGAGGTCGTCCTCATCGCTCAAGTCCCTCGGGCACGTCGTGTGCGACGAGGAGACGGCGTTGCTGTGGAGGGAAGCTGAGCAGGTCATCCCAGACCTCCGGGTTCAGGTAGCAGAAGAGTGTTATAACCTGGACTGGCTTGTAGACTGA
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| Protein seq | MIICYFSDRVFFETISQSANLDTIKMKLWEQISGNLVLGAYNQIPEWQLKLGPRDKGPVLVILDDVWSLSQLEELIFKFPGCKTLVVSRFKFPSLVTRTYEMELLDEEAALSVFCRAAFDQESVPRTADKKLVRQVAAECRGLPLALKVIGASLRDQPPKIWLSAKNRLSRGETISDSHETKLLERMAASIECLSGKVRECFLDLGCFPEDKKIPLDVLINIWMEIHDLDEPDAFAILVELSNKNLLTLVNDAQNKAGDLYSSYHDFSVTQHDVLRDLALHMSGRDALNNRRRLVMPRREESLPKDWQRNKDTPFEAQIVSIHTGEMKESDWFQMSFPKAEVLILNFASSVYYLPPFIATMQNLKALVLINYGTISATLDNLSAFTTLSDLRSLWLEKITLPPLPKTTIPLKNLRKISLVLCELTNSLRGSKVDLSMTFPRLSNLTIDHCIDLKELPSSICEISSLESISISNCHDLTELPYELGKLHCLSILRVYACPALWRLPPSVCSLKRLKYLDISQCVNLTDLPEELGHLTSLEKIDMRECSRLRSLPRSSSSLKSLGHVVCDEETALLWREAEQVIPDLRVQVAEECYNLDWLVD |
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| Function | Probable disease resistance protein At4g33300 [UniProtKB/Swiss-Prot:Q9SZA7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0586000 | Os12t0586000-01 | Chr12 | 24456516 | 24459081 | + | irgsp1_rep | ||
| CDS seq | ATGATCATCTGCTACTTCAGCGATAGAGTCTTCTTTGAGACGATCTCGCAGTCCGCAAATCTGGACACTATCAAGATGAAGCTATGGGAGCAGATCAGTGGAAACCTTGTGCTCGGTGCGTACAACCAGATCCCAGAATGGCAACTCAAGTTGGGGCCAAGGGACAAAGGACCTGTTCTTGTTATCCTTGATGATGTCTGGTCTCTCTCACAGCTAGAGGAGCTCATCTTCAAGTTCCCTGGGTGCAAGACACTTGTAGTATCAAGGTTCAAGTTCCCCTCGTTGGTCACCCGGACTTACGAAATGGAGTTGCTCGATGAGGAGGCGGCTCTTTCTGTCTTCTGTCGTGCTGCCTTTGATCAGGAGTCCGTTCCTCGGACCGCTGACAAGAAACTGGTTCGGCAGGTTGCTGCAGAGTGCAGAGGACTTCCTCTAGCACTGAAGGTTATCGGTGCGTCGTTGCGGGATCAGCCTCCTAAGATATGGTTGAGTGCGAAGAACCGGTTGTCGCGAGGAGAGACTATATCTGACTCTCATGAGACCAAACTCCTGGAGAGGATGGCCGCAAGCATCGAGTGCTTGTCAGGGAAGGTTAGAGAATGTTTCCTTGATCTGGGTTGCTTTCCGGAGGATAAGAAGATCCCACTGGATGTGTTGATCAATATATGGATGGAGATTCATGATCTTGATGAGCCGGATGCCTTCGCCATCTTGGTTGAGCTATCAAACAAGAATCTTCTCACCCTAGTTAATGATGCACAGAACAAAGCCGGCGATTTGTACAGCAGCTACCATGACTTCTCGGTTACACAACATGATGTATTGAGGGATCTAGCGCTTCACATGAGTGGTCGTGATGCTCTGAACAACCGGAGACGGCTGGTGATGCCAAGAAGAGAAGAATCACTACCGAAGGATTGGCAGAGGAATAAGGACACTCCGTTCGAAGCTCAGATAGTTTCCATTCATACAGGTGAGATGAAAGAATCTGACTGGTTCCAGATGAGCTTCCCCAAGGCCGAAGTGCTTATCCTCAACTTCGCGTCAAGTGTATACTATCTCCCACCATTCATTGCAACCATGCAGAACTTGAAAGCCCTGGTGCTGATCAACTATGGCACCATCAGTGCAACCCTTGATAACCTATCCGCCTTCACCACGCTCAGTGACCTGAGGAGCCTTTGGCTTGAGAAGATCACACTTCCACCGCTACCAAAAACCACAATCCCACTGAAGAACCTGCGCAAGATATCCCTTGTCCTCTGTGAGCTGACCAACAGTCTGAGAGGATCAAAGGTGGATCTCTCGATGACATTCCCGCGCCTATCCAACCTCACCATTGACCACTGCATAGACCTGAAGGAGCTACCATCTAGCATATGTGAAATCAGTTCCCTGGAGAGCATCTCCATCTCAAACTGCCATGACCTCACAGAGCTTCCATATGAGCTGGGCAAGCTGCATTGCCTGAGCATCCTAAGGGTATACGCCTGCCCGGCTCTGTGGCGGCTCCCGCCTTCGGTATGCAGCCTGAAGAGGCTGAAATACCTCGACATTTCGCAGTGTGTCAACCTGACGGACCTCCCTGAGGAGCTCGGTCACCTGACAAGCCTGGAGAAGATCGACATGCGAGAATGCTCGCGACTGAGGAGCCTCCCGAGGTCGTCCTCATCGCTCAAGTCCCTCGGGCACGTCGTGTGCGACGAGGAGACGGCGTTGCTGTGGAGGGAAGCTGAGCAGGTCATCCCAGACCTCCGGGTTCAGGTAGCAGAAGAGTGTTATAACCTGGACTGGCTTGTAGACTGA
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| Protein seq | MIICYFSDRVFFETISQSANLDTIKMKLWEQISGNLVLGAYNQIPEWQLKLGPRDKGPVLVILDDVWSLSQLEELIFKFPGCKTLVVSRFKFPSLVTRTYEMELLDEEAALSVFCRAAFDQESVPRTADKKLVRQVAAECRGLPLALKVIGASLRDQPPKIWLSAKNRLSRGETISDSHETKLLERMAASIECLSGKVRECFLDLGCFPEDKKIPLDVLINIWMEIHDLDEPDAFAILVELSNKNLLTLVNDAQNKAGDLYSSYHDFSVTQHDVLRDLALHMSGRDALNNRRRLVMPRREESLPKDWQRNKDTPFEAQIVSIHTGEMKESDWFQMSFPKAEVLILNFASSVYYLPPFIATMQNLKALVLINYGTISATLDNLSAFTTLSDLRSLWLEKITLPPLPKTTIPLKNLRKISLVLCELTNSLRGSKVDLSMTFPRLSNLTIDHCIDLKELPSSICEISSLESISISNCHDLTELPYELGKLHCLSILRVYACPALWRLPPSVCSLKRLKYLDISQCVNLTDLPEELGHLTSLEKIDMRECSRLRSLPRSSSSLKSLGHVVCDEETALLWREAEQVIPDLRVQVAEECYNLDWLVD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0586000 | RBH | 10.111910 | 10.674196 | 10.030712 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g39620 | RBH | 6.708492 | 6.012537 | 2.447006 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0018900 | RBH | 1.666480 | 36.673992 | 11.772369 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0019010 | RBH | 1.580487 | 7.923304 | 6.370063 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0019360 | RBH | 5.064969 | 24.856379 | 8.726305 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0018680 | RBH | 0.705441 | 0.379143 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018280 | RBH | 9.238751 | 27.216160 | 35.534122 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0325200 | RBH | 13.9933795 | 40.646269 | 21.016642 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018150 | RBH | 1.059961 | 1.551698 | 2.430705 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0329500 | SBH | 0.0688365 | 1.5986185 | 0.025465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0018360 | RBH | 0.786692 | 0.591517 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018620 | RBH | 1.380571 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0018530 | RBH | 10.007730 | 32.714577 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0018560 | RBH | 2.710331 | 0.0 | 3.436944 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0018740 | RBH | 1.109518 | 10.484897 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018430 | RBH | 1.069695 | 3.176962 | 4.124795 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018130 | RBH | 3.122568 | 35.680103 | 14.515279 |
