Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0557900 | OGI:12059160 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:22731572-22732467 | ||||||||
| Gene Symbol | OsFbox667, Os_F0594, OsFbox668, Os_F0389 | ||||||||||
| DNA seq | ATGCTGGAGGAAGTCATTATCGAGGATGCCCCGCTCCTGGAAAGGCTTACACCACCAGTTATATGGCATGAAGGCTTTGTTATTCGGGTTATTCAGGCACCAAAACTGAAGACATTGGGTTATCTAAGCCAGAAAATTTCCACACTTCAGCTTGGAAACATGGTTTTCCAGGTAGCTTCATACACATATACTGCAGGCATTTCTTTCTCTTGATATGTTATTTCTTCACAACATTTCATTCACCATATCTATTTCAGAAACTGGTGCCTGTTAGTCTGTCCAATGTGATGCGCGCTATGAAAATTTTAGCCCTTCACACCGCTCCTGATCTGGATGTTGTTATTGACTTCCTAAAATTCTTTCCGTGCGTGGAGAAGCTATACATCGTGGTGAGAGTTTTTTCTTTGTTAAATTCAGTGAGTACACACTCATTTTGTTCTATTGTGCCATGCCATCGGCCCTCTTCTTGAATCTATGGTTATATCATGTTTCTTTCAACTCTCTTTTCTCCTTGTTAGGCATTAAATCAGGGAAACTTCAAGAATGTACGGCGATATGTTTCACTTGAGTGCCTTGATCTACATCTCAAGATGGTGGAATTTATTAACTATCATGGAAACTTATCAGATTTGAACTTCATCAAGTTCTTCGTGTTAAATGCTCAAGTGCTAGAATGTATAAAGTTTGTAGCCTGTCGTGACAAATGTGATGCAAAATGGATTAAAACACAACATCAGAGGCTACAACTTTATTCCAGAGCTTCACGAGGCGTTACACTTGATTTTCAAGCTGATTATGGGGTGGATAGTTTGGTACACGTGAAGCACATCAGTGATTTGATTACAGATGATCCCTTTGATAGATCGTTCTGTAGATGCCGTGATGAGGAAATATGA
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| CDS seq | ATGCTGGAGGAAGTCATTATCGAGGATGCCCCGCTCCTGGAAAGGCTTACACCACCAGTTATATGGCATGAAGGCTTTGTTATTCGGGTTATTCAGGCACCAAAACTGAAGACATTGGGTTATCTAAGCCAGAAAATTTCCACACTTCAGCTTGGAAACATGGTTTTCCAGAAACTGGTGCCTGTTAGTCTGTCCAATGTGATGCGCGCTATGAAAATTTTAGCCCTTCACACCGCTCCTGATCTGGATGTTGTTATTGACTTCCTAAAATTCTTTCCGTGCGTGGAGAAGCTATACATCGTGGCATTAAATCAGGGAAACTTCAAGAATGTACGGCGATATGTTTCACTTGAGTGCCTTGATCTACATCTCAAGATGGTGGAATTTATTAACTATCATGGAAACTTATCAGATTTGAACTTCATCAAGTTCTTCGTGTTAAATGCTCAAGTGCTAGAATGTATAAAGTTTGTAGCCTGTCGTGACAAATGTGATGCAAAATGGATTAAAACACAACATCAGAGGCTACAACTTTATTCCAGAGCTTCACGAGGCGTTACACTTGATTTTCAAGCTGATTATGGGGTGGATAGTTTGGTACACGTGAAGCACATCAGTGATTTGATTACAGATGATCCCTTTGATAGATCGTTCTGTAGATGCCGTGATGAGGAAATATGA
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| Protein seq | MLEEVIIEDAPLLERLTPPVIWHEGFVIRVIQAPKLKTLGYLSQKISTLQLGNMVFQKLVPVSLSNVMRAMKILALHTAPDLDVVIDFLKFFPCVEKLYIVALNQGNFKNVRRYVSLECLDLHLKMVEFINYHGNLSDLNFIKFFVLNAQVLECIKFVACRDKCDAKWIKTQHQRLQLYSRASRGVTLDFQADYGVDSLVHVKHISDLITDDPFDRSFCRCRDEEI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0557900 | Os12t0557900-00 | Chr12 | 22731572 | 22732467 | + | irgsp1_rep | ||
| CDS seq | ATGCTGGAGGAAGTCATTATCGAGGATGCCCCGCTCCTGGAAAGGCTTACACCACCAGTTATATGGCATGAAGGCTTTGTTATTCGGGTTATTCAGGCACCAAAACTGAAGACATTGGGTTATCTAAGCCAGAAAATTTCCACACTTCAGCTTGGAAACATGGTTTTCCAGAAACTGGTGCCTGTTAGTCTGTCCAATGTGATGCGCGCTATGAAAATTTTAGCCCTTCACACCGCTCCTGATCTGGATGTTGTTATTGACTTCCTAAAATTCTTTCCGTGCGTGGAGAAGCTATACATCGTGGCATTAAATCAGGGAAACTTCAAGAATGTACGGCGATATGTTTCACTTGAGTGCCTTGATCTACATCTCAAGATGGTGGAATTTATTAACTATCATGGAAACTTATCAGATTTGAACTTCATCAAGTTCTTCGTGTTAAATGCTCAAGTGCTAGAATGTATAAAGTTTGTAGCCTGTCGTGACAAATGTGATGCAAAATGGATTAAAACACAACATCAGAGGCTACAACTTTATTCCAGAGCTTCACGAGGCGTTACACTTGATTTTCAAGCTGATTATGGGGTGGATAGTTTGGTACACGTGAAGCACATCAGTGATTTGATTACAGATGATCCCTTTGATAGATCGTTCTGTAGATGCCGTGATGAGGAAATATGA
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| Protein seq | MLEEVIIEDAPLLERLTPPVIWHEGFVIRVIQAPKLKTLGYLSQKISTLQLGNMVFQKLVPVSLSNVMRAMKILALHTAPDLDVVIDFLKFFPCVEKLYIVALNQGNFKNVRRYVSLECLDLHLKMVEFINYHGNLSDLNFIKFFVLNAQVLECIKFVACRDKCDAKWIKTQHQRLQLYSRASRGVTLDFQADYGVDSLVHVKHISDLITDDPFDRSFCRCRDEEI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0557900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g37110 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0558366 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017080 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017200 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017560 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016880 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016480 | RBH | 1.833339 | 3.018726 | 7.084277 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0299300 | RBH | 1.4109745 | 1.8193535 | 4.596795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016380 | RBH | 0.000000 | 0.0 | 0.578007 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0332800 | RBH | 1.3886245 | 2.431487 | 13.8214275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016620 | RBH | 0.087751 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016860 | RBH | 0.204863 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016820 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016800 | RBH | 0.211095 | 0.0 | 0.469031 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016980 | RBH | 0.070422 | 0.829843 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016410 | RBH | 0.0 | 0.0 | 0.0 |
