Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0542200 | OGI:12056690 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:21711496-21713941 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAATATCCTTCAAATTGGGGCGGCGGCGGTGATGCATAGGAGTGACTTAAGATCGGCGGTAGAATGATTAGCTCCTCAGGGGCTGGAGGAGGCAACGATGGTGCCGGTGGCGGAGGCGATGGGACGACTGGTGGCGGTGGGGATAAGACGGGTGGTGGTGGGGAATGTACTGGTGGAGGCGGTGAGATCATTGGAGAAGGAGGTGGGGGTGAATGTACTGGTGGAGGTGGAGAACTTACAGGCGCCGGTGGGGGAGGAGACTTTACAGGAGGAGGCGGTGAGCTTACTGGTGCAGGTGGTGGTGGGGATTCCATAGGTGGAGGTGGAGAACTGACCGGCGCAGGAGGTGGAGGAGATTTTACTGGTGGTGGTGGAGAGCTCACTGGTGCCGGGGGCGGTGGGAATTTTACTGGTGGCGGTGGAGAGATCACCGGCGCGGGTGGTGGTGGGGATTTTATCAGTGGGGGTGGAGAGCTCACCGGTGCGGGCGGTGGTGGGGATTTTAATGGTGGAGGAGGAGAGTGGACTGGTGCTGGGGGTGGAGGAGGTTTTACTGGTGGAGGTGGAGAGTGGACTGGTGCTGGGGGTGGAGGAGGTTTTACCGGTGGCGGTGGAGAGTGGACTGGTGCAGGTGGTGGAGGGGATTTTACCGGTGGCGGTGGAGAGCTCACAGGTGCTGGGGGTGGAGGGGATCTTACTAGTGGAGGAGGAGAGTAGACTGGTGCGGGGGGTGGAGGGGATTTTACTGGTGGCGGTGGAGAGTGGATTGGTGCGGGGGGTGGAGGGGATTTTACCGGTGGCGGTGGAGAGCTCACGGGTGCTGGCGGTGGAGGGGATTTGACTGGTGGGGGTGGAGAGCTCACCGGTGCAGGCGGTGGTGGGGATTTTAACGGTGGGGGAGGGGAGCTCACCGGTGCTGGCGGTGGAGAGCTCACTGGTGCCGGTGGTGGTGGGGATTTCACTGGTGGAGGAGGATAGCTCACTGGTACCGGTGGCAGCGGGAATTTGACCGGTGGAGGTGAGCTCTTAGGAGGCTCTATGTATGGTGATGGTGACGGTGTCTCCTCCTTTGGGCTGATCAACGGCGGAGGCGCCAGAGTGGGCGGCGTGGGTGTAATCTTCTTCGGAGCCGGCTTCGACGACGACGGCAGCGCCGAGCAGGTGTTCGTCCGGCAGTCGATGGGGCGCTTGAGCAGGGGCGCGCACTCGAGCGACGTCTTCTGCTCCGGTCGCCCGCCGCCGAGGCAGTTGCCCTTGTCGTCGAGCTCGACCATGGCGGTCTCCGCCGGGACGCACGCTGGCGGCTCCACGCTGAAGTAGTTGTACGCGAAGCTGAAGTTGGCGAGCGACGGGAGCTTGCAGACGGGCTCCGGCACGGCGCCGGCGAGCAGGTTCCTCGACACGTCGAGCTGCTCGAGCTTGCCCATCTTGGCGAGCTCCTCCGGCAGCAAGCCGACGAGCATGTTCCCGCCGACGTCCACCACCTCGGCGTCGGCGAGCTCGCCGATCTCCGGCGGGATGCACCCGTCAAGGCGGTTGTTGAGGAGCAGGAGCTCGTTGAGCGTCCCCTTCATCCGCCCGACGCTGCGCGGGATGCAGCCGACGAAGTGGTTGTTGGCGAGCACCACCACCGTCGCCGTCGAGCCGCCGATGCTGTCCGGGATGCGTCCGACGAAGCGGTTGCTGTTGAGGAAGATGGCGTCGAGGCCCTTGTCGAACAGCTGCGGCGGCAGCTCGCCCTCGAAGTCGTTGAACCTGATGTCGAGGTACTTGAGCACGGCCATGTCGAGCACCACCTCCGGGAACCCGCCGACGAGGCGGTTGTTGCTGACGTCGAGCTCGTGCAGCAGCGCCAGCCGCGAGAAGCTCTTGGGGATGACGCCGCAGAAGCGGTTGGAGTTGACGTGGAACAGCGCGAGGTCGGTCATGAGGCCGAGCTCGGCGGGGAGGTACCCGGCGATGTCGCCGCCGTTGAGGTCGACGCCGGCGACGACGGTGACGGCCGGGTCGTCGAGCGCCGCCGCGCACGTGATGCCGAAGTAGGAGCAGACATCGGCGCCGACCCAGCCGCCGGTGAAGTTCTTGGGGTCGGAGTAGATCGCCTGCCGGAGCGCCTGCAGGCCGACGTAGGCGCGGCGGAGGCGGTCGTTGGCGAAGGTGACGTCGACGTGGATGTCGAACTCGAAGTCGTCGGGGAGCTCGCCGTTGCCGCCGCCCTCCTTGAGGGACAGCAGCTGCCGCCCCGCGATGTACGACGCCTCGGCGTCGGAGAGCGCCGCGGCGGTGACCACGGTCACCGCGAGCAGGGCGACGGCGGCGGCGGCCACGGCGAGGCGGCGCGCGGCGGCGGCGGCGGCCTCCATGGCTGGAGGTGGGGGAGGAGAGGGCCGGGGGGTGGGGGAGGAGGCACGAGGTGGGCCACCACCGGCGACGGTGCCTGCCTGC
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| CDS seq | GCAGGCAGGCACCGTCGCCGGTGGTGGCCCACCTCGTGCCTCCTCCCCCACCCCCCGGCCCTCTCCTCCCCCACCTCCAGCCATGGAGGCCGCCGCCGCCGCCGCGCGCCGCCTCGCCGTGGCCGCCGCCGCCGTCGCCCTGCTCGCGGTGACCGTGGTCACCGCCGCGGCGCTCTCCGACGCCGAGGCGTCCTCCCCGACGACTTCGAGTTCGACATCCACGTCGACGTCACCTTCGCCAACGACCGCCTCCGCCGCGCCTACGTCGGCCTGCAGGCGCTCCGGCAGGCGATCTACTCCGACCCCAAGAACTTCACCGGCGGCTGGGTCGGCGCCGATGTCTGCTCCTACTTCGGCATCACGTGCGCGGCGGCGCTCGACGACCCGGCCGTCACCGTCGTCGCCGGCGTCGACCTCAACGGCGGCGACATCGCCGGGTACCTCCCCGCCGAGCTCGGCCTCATGACCGACCTCGCGCTGTTCCACGTCAACTCCAACCGCTTCTGCGGCGTCATCCCCAAGAGCTTCTCGCGGCTGGCGCTGCTGCACGAGCTCGACGTCAGCAACAACCGCCTCGTCGGCGGGTTCCCGGAGGTGGTGCTCGACATGGCCGTGCTCAAGTACCTCGACATCAGGTTCAACGACTTCGAGGGCGAGCTGCCGCCGCAGCTGTTCGACAAGGGCCTCGACGCCATCTTCCTCAACAGCAACCGCTTCGTCGGACGCATCCCGGACAGCATCGGCGGCTCGACGGCGACGGTGGTGGTGCTCGCCAACAACCACTTCGTCGGCTGCATCCCGCGCAGCGTCGGGCGGATGAAGGGGACGCTCAACGAGCTCCTGCTCCTCAACAACCGCCTTGACGGGTGCATCCCGCCGGAGATCGGCGAGCTCGCCGACGCCGAGGTGGTGGACGTCGGCGGGAACATGCTCGTCGGCTTGCTGCCGGAGGAGCTCGCCAAGATGGGCAAGCTCGAGCAGCTCGACGTGTCGAGGAACCTGCTCGCCGGCGCCGTGCCGGAGCCCGTCTGCAAGCTCCCGTCGCTCGCCAACTTCAGCTTCGCGTACAACTACTTCAGCGTGGAGCCGCCAGCGTGCGTCCCGGCGGAGACCGCCATGGTCGAGCTCGACGACAAGGGCAACTGCCTCGGCGGCGGGCGACCGGAGCAGAAGACGTCGCTCGAGTGCGCGCCCCTGCTCAAGCGCCCCATCGACTGCCGGACGAACACCTGCTCGGCGCTGCCGTCGTCGTCGAAGCCGGCTCCGAAGAAGATTACACCCACGCCGCCCACTCTGGCGCCTCCGCCGTTGATCAGCCCAAAGGAGGAGACACCGTCACCATCACCATACATAGAGCCTCCTAAGAGCTCACCTCCACCGGTCAAATTCCCGCTGCCACCGGTACCAGTGAGCTATCCTCCTCCACCAGTGAAATCCCCACCACCACCGGCACCAGTGAGCTCTCCACCGCCAGCACCGGTGAGCTCCCCTCCCCCACCGTTAAAATCCCCACCACCGCCTGCACCGGTGAGCTCTCCACCCCCACCAGTCAAATCCCCTCCACCGCCAGCACCCGTGAGCTCTCCACCGCCACCGGTAAAATCCCCTCCACCCCCCGCACCAATCCACTCTCCACCGCCACCAGTAAAATCCCCTCCACCCCCCGCACCAGTCTACTCTCCTCCTCCACTAGTAAGATCCCCTCCACCCCCAGCACCTGTGAGCTCTCCACCGCCACCGGTAAAATCCCCTCCACCACCTGCACCAGTCCACTCTCCACCGCCACCGGTAAAACCTCCTCCACCCCCAGCACCAGTCCACTCTCCACCTCCACCAGTAAAACCTCCTCCACCCCCAGCACCAGTCCACTCTCCTCCTCCACCATTAAAATCCCCACCACCGCCCGCACCGGTGAGCTCTCCACCCCCACTGATAAAATCCCCACCACCACCCGCGCCGGTGATCTCTCCACCGCCACCAGTAAAATTCCCACCGCCCCCGGCACCAGTGAGCTCTCCACCACCACCAGTAAAATCTCCTCCACCTCCTGCGCCGGTCAGTTCTCCACCTCCACCTATGGAATCCCCACCACCACCTGCACCAGTAAGCTCACCGCCTCCTCCTGTAAAGTCTCCTCCCCCACCGGCGCCTGTAAGTTCTCCACCTCCACCAGTACATTCACCCCCACCTCCTTCTCCAATGATCTCACCGCCTCCACCAGTACATTCCCCACCACCACCCGTCTTATCCCCACCGCCACCAGTCGTCCCATCGCCTCCGCCACCGGCACCATCGTTGCCTCCTCCAGCCCCTGAGGAGCTAATCATTCTACCGCCGATCTTAAGTCACTCCTATGCATCACCGCCGCCGCCCCAATTTGAAGGATATTAA
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| Protein seq | AGRHRRRWWPTSCLLPHPPALSSPTSSHGGRRRRRAPPRRGRRRRRPARGDRGHRRGALRRRGVLPDDFEFDIHVDVTFANDRLRRAYVGLQALRQAIYSDPKNFTGGWVGADVCSYFGITCAAALDDPAVTVVAGVDLNGGDIAGYLPAELGLMTDLALFHVNSNRFCGVIPKSFSRLALLHELDVSNNRLVGGFPEVVLDMAVLKYLDIRFNDFEGELPPQLFDKGLDAIFLNSNRFVGRIPDSIGGSTATVVVLANNHFVGCIPRSVGRMKGTLNELLLLNNRLDGCIPPEIGELADAEVVDVGGNMLVGLLPEELAKMGKLEQLDVSRNLLAGAVPEPVCKLPSLANFSFAYNYFSVEPPACVPAETAMVELDDKGNCLGGGRPEQKTSLECAPLLKRPIDCRTNTCSALPSSSKPAPKKITPTPPTLAPPPLISPKEETPSPSPYIEPPKSSPPPVKFPLPPVPVSYPPPPVKSPPPPAPVSSPPPAPVSSPPPPLKSPPPPAPVSSPPPPVKSPPPPAPVSSPPPPVKSPPPPAPIHSPPPPVKSPPPPAPVYSPPPLVRSPPPPAPVSSPPPPVKSPPPPAPVHSPPPPVKPPPPPAPVHSPPPPVKPPPPPAPVHSPPPPLKSPPPPAPVSSPPPLIKSPPPPAPVISPPPPVKFPPPPAPVSSPPPPVKSPPPPAPVSSPPPPMESPPPPAPVSSPPPPVKSPPPPAPVSSPPPPVHSPPPPSPMISPPPPVHSPPPPVLSPPPPVVPSPPPPAPSLPPPAPEELIILPPILSHSYASPPPPQFEGY |
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| Function | Pollen-specific leucine-rich repeat extensin-like protein 1 [UniProtKB/Swiss-Prot:Q9LJ64] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0542200 | Os12t0542200-00 | Chr12 | 21711496 | 21713941 | - | irgsp1_rep | ||
| CDS seq | GCAGGCAGGCACCGTCGCCGGTGGTGGCCCACCTCGTGCCTCCTCCCCCACCCCCCGGCCCTCTCCTCCCCCACCTCCAGCCATGGAGGCCGCCGCCGCCGCCGCGCGCCGCCTCGCCGTGGCCGCCGCCGCCGTCGCCCTGCTCGCGGTGACCGTGGTCACCGCCGCGGCGCTCTCCGACGCCGAGGCGTCCTCCCCGACGACTTCGAGTTCGACATCCACGTCGACGTCACCTTCGCCAACGACCGCCTCCGCCGCGCCTACGTCGGCCTGCAGGCGCTCCGGCAGGCGATCTACTCCGACCCCAAGAACTTCACCGGCGGCTGGGTCGGCGCCGATGTCTGCTCCTACTTCGGCATCACGTGCGCGGCGGCGCTCGACGACCCGGCCGTCACCGTCGTCGCCGGCGTCGACCTCAACGGCGGCGACATCGCCGGGTACCTCCCCGCCGAGCTCGGCCTCATGACCGACCTCGCGCTGTTCCACGTCAACTCCAACCGCTTCTGCGGCGTCATCCCCAAGAGCTTCTCGCGGCTGGCGCTGCTGCACGAGCTCGACGTCAGCAACAACCGCCTCGTCGGCGGGTTCCCGGAGGTGGTGCTCGACATGGCCGTGCTCAAGTACCTCGACATCAGGTTCAACGACTTCGAGGGCGAGCTGCCGCCGCAGCTGTTCGACAAGGGCCTCGACGCCATCTTCCTCAACAGCAACCGCTTCGTCGGACGCATCCCGGACAGCATCGGCGGCTCGACGGCGACGGTGGTGGTGCTCGCCAACAACCACTTCGTCGGCTGCATCCCGCGCAGCGTCGGGCGGATGAAGGGGACGCTCAACGAGCTCCTGCTCCTCAACAACCGCCTTGACGGGTGCATCCCGCCGGAGATCGGCGAGCTCGCCGACGCCGAGGTGGTGGACGTCGGCGGGAACATGCTCGTCGGCTTGCTGCCGGAGGAGCTCGCCAAGATGGGCAAGCTCGAGCAGCTCGACGTGTCGAGGAACCTGCTCGCCGGCGCCGTGCCGGAGCCCGTCTGCAAGCTCCCGTCGCTCGCCAACTTCAGCTTCGCGTACAACTACTTCAGCGTGGAGCCGCCAGCGTGCGTCCCGGCGGAGACCGCCATGGTCGAGCTCGACGACAAGGGCAACTGCCTCGGCGGCGGGCGACCGGAGCAGAAGACGTCGCTCGAGTGCGCGCCCCTGCTCAAGCGCCCCATCGACTGCCGGACGAACACCTGCTCGGCGCTGCCGTCGTCGTCGAAGCCGGCTCCGAAGAAGATTACACCCACGCCGCCCACTCTGGCGCCTCCGCCGTTGATCAGCCCAAAGGAGGAGACACCGTCACCATCACCATACATAGAGCCTCCTAAGAGCTCACCTCCACCGGTCAAATTCCCGCTGCCACCGGTACCAGTGAGCTATCCTCCTCCACCAGTGAAATCCCCACCACCACCGGCACCAGTGAGCTCTCCACCGCCAGCACCGGTGAGCTCCCCTCCCCCACCGTTAAAATCCCCACCACCGCCTGCACCGGTGAGCTCTCCACCCCCACCAGTCAAATCCCCTCCACCGCCAGCACCCGTGAGCTCTCCACCGCCACCGGTAAAATCCCCTCCACCCCCCGCACCAATCCACTCTCCACCGCCACCAGTAAAATCCCCTCCACCCCCCGCACCAGTCTACTCTCCTCCTCCACTAGTAAGATCCCCTCCACCCCCAGCACCTGTGAGCTCTCCACCGCCACCGGTAAAATCCCCTCCACCACCTGCACCAGTCCACTCTCCACCGCCACCGGTAAAACCTCCTCCACCCCCAGCACCAGTCCACTCTCCACCTCCACCAGTAAAACCTCCTCCACCCCCAGCACCAGTCCACTCTCCTCCTCCACCATTAAAATCCCCACCACCGCCCGCACCGGTGAGCTCTCCACCCCCACTGATAAAATCCCCACCACCACCCGCGCCGGTGATCTCTCCACCGCCACCAGTAAAATTCCCACCGCCCCCGGCACCAGTGAGCTCTCCACCACCACCAGTAAAATCTCCTCCACCTCCTGCGCCGGTCAGTTCTCCACCTCCACCTATGGAATCCCCACCACCACCTGCACCAGTAAGCTCACCGCCTCCTCCTGTAAAGTCTCCTCCCCCACCGGCGCCTGTAAGTTCTCCACCTCCACCAGTACATTCACCCCCACCTCCTTCTCCAATGATCTCACCGCCTCCACCAGTACATTCCCCACCACCACCCGTCTTATCCCCACCGCCACCAGTCGTCCCATCGCCTCCGCCACCGGCACCATCGTTGCCTCCTCCAGCCCCTGAGGAGCTAATCATTCTACCGCCGATCTTAAGTCACTCCTATGCATCACCGCCGCCGCCCCAATTTGAAGGATATTAA
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| Protein seq | AGRHRRRWWPTSCLLPHPPALSSPTSSHGGRRRRRAPPRRGRRRRRPARGDRGHRRGALRRRGVLPDDFEFDIHVDVTFANDRLRRAYVGLQALRQAIYSDPKNFTGGWVGADVCSYFGITCAAALDDPAVTVVAGVDLNGGDIAGYLPAELGLMTDLALFHVNSNRFCGVIPKSFSRLALLHELDVSNNRLVGGFPEVVLDMAVLKYLDIRFNDFEGELPPQLFDKGLDAIFLNSNRFVGRIPDSIGGSTATVVVLANNHFVGCIPRSVGRMKGTLNELLLLNNRLDGCIPPEIGELADAEVVDVGGNMLVGLLPEELAKMGKLEQLDVSRNLLAGAVPEPVCKLPSLANFSFAYNYFSVEPPACVPAETAMVELDDKGNCLGGGRPEQKTSLECAPLLKRPIDCRTNTCSALPSSSKPAPKKITPTPPTLAPPPLISPKEETPSPSPYIEPPKSSPPPVKFPLPPVPVSYPPPPVKSPPPPAPVSSPPPAPVSSPPPPLKSPPPPAPVSSPPPPVKSPPPPAPVSSPPPPVKSPPPPAPIHSPPPPVKSPPPPAPVYSPPPLVRSPPPPAPVSSPPPPVKSPPPPAPVHSPPPPVKPPPPPAPVHSPPPPVKPPPPPAPVHSPPPPLKSPPPPAPVSSPPPLIKSPPPPAPVISPPPPVKFPPPPAPVSSPPPPVKSPPPPAPVSSPPPPMESPPPPAPVSSPPPPVKSPPPPAPVSSPPPPVHSPPPPSPMISPPPPVHSPPPPVLSPPPPVVPSPPPPAPSLPPPAPEELIILPPILSHSYASPPPPQFEGY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0542200 | RBH | 0.0 | 0.0 | 13.389353 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g35710 | RBH | 0.0 | 0.0 | 3.567463 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016320 | RBH | 0.0 | 0.0 | 4.717769 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016440 | RBH | 0.0 | 0.0 | 13.846230 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0016780 | RBH | 0.0 | 0.0 | 28.470722 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016120 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0015610 | RBH | 0.0 | 0.0 | 3.476371 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0286100 | RBH | 0.003285 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015710 | RBH | 0.0 | 0.0 | 8.642675 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0318500 | RBH | 0 | 0 | 0.002117 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0015870 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016100 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016090 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016070 | RBH | 0.0 | 0.0 | 1.695747 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016310 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016130 | RBH | 0.0 | 0.0 | 2.470299 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0015810 | RBH | 0.0 | 0.0 | 24.707714 |
