Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0521300 | OGI:04010500 | 1/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:20304010-20305098 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAGCAACGCCATTAACAGTATAAGAGAAAGTGTTAAATATGCTCGGAGTTCGCAATCACGTGGTCAAAGGTTTGAAGAGATGATTGCTCAAGTGGGAATAAAAACTAACAGACGACCATCGCTTGATGTATCAACGAGATGGAATTCGACATACTTAATGCTCGAGTCATCTTTATTGGTCAGAATGGCCTTTGAAGCCTTGGATCGGCATGACATAAATTATTCGCATCAACCCTTCGATTATCAATGGATAATGGCTGAGAAGCTTTGTGCTTTGTTGAAAGTTTTCTATGAAGCTACTGTTGCAGTATCTGGTACGTTGTACCCAACTTCAACATGCTATTTTCATGAACTTTGGAAGATAAAGATGGTTTTGGACAAGGAGGCTACAAATGAAGATGTCACCATTGCATCTATTGTCAAGGAAATGAAAGAAAAATTTAAGAAGTACTGGGACGCTCAATACTTGCAAATATGTTTCCCGGTTATTTTTGATCCAAGGTATAAGTACAAATTCATTGAGTTTCGTTTGAAGTCTGCATTTGGAGCTGCTGCAACTCCTTACCTTAAGGAAATCAAGAGTAATATGCAGAAATTGTTTGATGAATATTCTGCCAAGTATGGGGGCTCAAACAACATCAATTCTCAGCCCGAAACAAGTGTTGAGCAGAATGTTGATGCAAGTAATCAATTCGCTGATTGGAGACAGTTTCTACATGACAAAAGTAGGAGCAAAGTAAAGAGTGAGCTTAGTCGATATCTTGCTGATATGCCTCAGGAAGGTGATTTCCAAGATGGGCATGATTTTGATATCTTGAACTGGTGGATGGTAAACAAAACAAAGTACCCTGTGATTTCACGAATGGCACGTGATGTTTTGGCTATTCTAGCAACATCAGTGGCATCAGAGGCAGCATTTTCAACTGGAGAAAGGATCATTAGTGACTATAGAAGTAGACTTTCGAGCAGTACTGTAGAGGCATTGATTTGCCTTCAAGATTGGATGAGGGCAGAAGGTTTGGGTGATTTCTTTGCACGTGATCTTGCTGAGAGTGATGACCAAAATGTGCAACATTCAGGTATTTAA
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| CDS seq | ATGAGCAACGCCATTAACAGTATAAGAGAAAGTGTTAAATATGCTCGGAGTTCGCAATCACGTGGTCAAAGGTTTGAAGAGATGATTGCTCAAGTGGGAATAAAAACTAACAGACGACCATCGCTTGATGTATCAACGAGATGGAATTCGACATACTTAATGCTCGAGTCATCTTTATTGGTCAGAATGGCCTTTGAAGCCTTGGATCGGCATGACATAAATTATTCGCATCAACCCTTCGATTATCAATGGATAATGGCTGAGAAGCTTTGTGCTTTGTTGAAAGTTTTCTATGAAGCTACTGTTGCAGTATCTGGTACGTTGTACCCAACTTCAACATGCTATTTTCATGAACTTTGGAAGATAAAGATGGTTTTGGACAAGGAGGCTACAAATGAAGATGTCACCATTGCATCTATTGTCAAGGAAATGAAAGAAAAATTTAAGAAGTACTGGGACGCTCAATACTTGCAAATATGTTTCCCGGTTATTTTTGATCCAAGGTATAAGTACAAATTCATTGAGTTTCGTTTGAAGTCTGCATTTGGAGCTGCTGCAACTCCTTACCTTAAGGAAATCAAGAGTAATATGCAGAAATTGTTTGATGAATATTCTGCCAAGTATGGGGGCTCAAACAACATCAATTCTCAGCCCGAAACAAGTGTTGAGCAGAATGTTGATGCAAGTAATCAATTCGCTGATTGGAGACAGTTTCTACATGACAAAAGTAGGAGCAAAGTAAAGAGTGAGCTTAGTCGATATCTTGCTGATATGCCTCAGGAAGGTGATTTCCAAGATGGGCATGATTTTGATATCTTGAACTGGTGGATGGTAAACAAAACAAAGTACCCTGTGATTTCACGAATGGCACGTGATGTTTTGGCTATTCTAGCAACATCAGTGGCATCAGAGGCAGCATTTTCAACTGGAGAAAGGATCATTAGTGACTATAGAAGTAGACTTTCGAGCAGTACTGTAGAGGCATTGATTTGCCTTCAAGATTGGATGAGGGCAGAAGGTTTGGGTGATTTCTTTGCACGTGATCTTGCTGAGAGTGATGACCAAAATGTGCAACATTCAGGTATTTAA
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| Protein seq | MSNAINSIRESVKYARSSQSRGQRFEEMIAQVGIKTNRRPSLDVSTRWNSTYLMLESSLLVRMAFEALDRHDINYSHQPFDYQWIMAEKLCALLKVFYEATVAVSGTLYPTSTCYFHELWKIKMVLDKEATNEDVTIASIVKEMKEKFKKYWDAQYLQICFPVIFDPRYKYKFIEFRLKSAFGAAATPYLKEIKSNMQKLFDEYSAKYGGSNNINSQPETSVEQNVDASNQFADWRQFLHDKSRSKVKSELSRYLADMPQEGDFQDGHDFDILNWWMVNKTKYPVISRMARDVLAILATSVASEAAFSTGERIISDYRSRLSSSTVEALICLQDWMRAEGLGDFFARDLAESDDQNVQHSGI |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0521300 | Os12t0521300-00 | Chr12 | 20304010 | 20305098 | + | irgsp1_rep | ||
| CDS seq | ATGAGCAACGCCATTAACAGTATAAGAGAAAGTGTTAAATATGCTCGGAGTTCGCAATCACGTGGTCAAAGGTTTGAAGAGATGATTGCTCAAGTGGGAATAAAAACTAACAGACGACCATCGCTTGATGTATCAACGAGATGGAATTCGACATACTTAATGCTCGAGTCATCTTTATTGGTCAGAATGGCCTTTGAAGCCTTGGATCGGCATGACATAAATTATTCGCATCAACCCTTCGATTATCAATGGATAATGGCTGAGAAGCTTTGTGCTTTGTTGAAAGTTTTCTATGAAGCTACTGTTGCAGTATCTGGTACGTTGTACCCAACTTCAACATGCTATTTTCATGAACTTTGGAAGATAAAGATGGTTTTGGACAAGGAGGCTACAAATGAAGATGTCACCATTGCATCTATTGTCAAGGAAATGAAAGAAAAATTTAAGAAGTACTGGGACGCTCAATACTTGCAAATATGTTTCCCGGTTATTTTTGATCCAAGGTATAAGTACAAATTCATTGAGTTTCGTTTGAAGTCTGCATTTGGAGCTGCTGCAACTCCTTACCTTAAGGAAATCAAGAGTAATATGCAGAAATTGTTTGATGAATATTCTGCCAAGTATGGGGGCTCAAACAACATCAATTCTCAGCCCGAAACAAGTGTTGAGCAGAATGTTGATGCAAGTAATCAATTCGCTGATTGGAGACAGTTTCTACATGACAAAAGTAGGAGCAAAGTAAAGAGTGAGCTTAGTCGATATCTTGCTGATATGCCTCAGGAAGGTGATTTCCAAGATGGGCATGATTTTGATATCTTGAACTGGTGGATGGTAAACAAAACAAAGTACCCTGTGATTTCACGAATGGCACGTGATGTTTTGGCTATTCTAGCAACATCAGTGGCATCAGAGGCAGCATTTTCAACTGGAGAAAGGATCATTAGTGACTATAGAAGTAGACTTTCGAGCAGTACTGTAGAGGCATTGATTTGCCTTCAAGATTGGATGAGGGCAGAAGGTTTGGGTGATTTCTTTGCACGTGATCTTGCTGAGAGTGATGACCAAAATGTGCAACATTCAGGTATTTAA
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| Protein seq | MSNAINSIRESVKYARSSQSRGQRFEEMIAQVGIKTNRRPSLDVSTRWNSTYLMLESSLLVRMAFEALDRHDINYSHQPFDYQWIMAEKLCALLKVFYEATVAVSGTLYPTSTCYFHELWKIKMVLDKEATNEDVTIASIVKEMKEKFKKYWDAQYLQICFPVIFDPRYKYKFIEFRLKSAFGAAATPYLKEIKSNMQKLFDEYSAKYGGSNNINSQPETSVEQNVDASNQFADWRQFLHDKSRSKVKSELSRYLADMPQEGDFQDGHDFDILNWWMVNKTKYPVISRMARDVLAILATSVASEAAFSTGERIISDYRSRLSSSTVEALICLQDWMRAEGLGDFFARDLAESDDQNVQHSGI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0521300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g12020 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008530 | SBH | 0.044848 | 2.387684 | 0.868566 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0012720 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0012550 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006430 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0012040 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0247000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0012240 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0492800 | SBH | 0.2501715 | 1.59472 | 1.1322495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0012120 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0012480 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0012290 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0012510 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008270 | SBH | 0.225771 | 0.0 | 2.494105 |
