Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0515300 | OGI:12053380 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:19991402-19994410 | ||||||||
| Gene Symbol | OsMYB46 | ||||||||||
| DNA seq | ATAGATGGGGCCCCTCCCTCTCAATCATTCAACTTGGAAATCAAGGAAAGGCAAGGATGACACATCTTTCATCAGCTCCTCCAAGTCCCACTCTCCCATGACATTCCTGCTCATGTGCTGCTGCTGCTGCTGCAGCATCTGATGCTGCTGCTGCTGTTGTTGGTGGTGACCCTCCCAATAGATCATGTTGCTGCTGCTGTTCATTAGGCTAATGCAGCAGCTGCTGCTGATGTTGTTGTTATTATCACTGTTGTTCTTGTTGCTGTTGCTGTTGTCTGTGATGTTGCTGCTCAGTGTGGCCGCGGTCGTGTTGCTGCCGGTTTTGTTAGGGTGGTCGTCGTCGTCGTCGAGAATGGTTTGGTGGTCTAGGAGAGGTGGCACTGATGCGCCGCCAAAGAGGATGCTGCTGCTGTGATGGTGATGATCTCCTATTAAGCTTGATCCGTCCATGGTGGCGATCGCGTGGTGGTGGTGGTGGGCGCCGGTTGATCCGTAGTATGCTTGCTTGATGGAGATGGAGTGGTCGTGGAAGAACGGCGGTGGCGGCGAGGTGTCGACGCCGCAGACCTGGTCGGGGAGTGGGAGGAGGCCGCCGTAGCTCCTCCCCGCCGCCGCCGCCGCCATTATCGACGGCCGGCTCTGCATCGACGAGGAAGACGACGACGACGACGACGAGGAATCCACCCACATGCTCTTCATGGCAGCATTAGCTGTCCCGACAACGACGTCGTCCGTGGCGCCGCCGCCGCCGGCGAGGTCGACGACGGCGCCGAGCTTGTGCTCCGGCGGGGAGGCGCAGTCGGTGGTGGTGGCCGGAGACGCCGAGGAGGAGGAGATCTTGAGGCGCTTCTTGATGGTGGAGTTCCAGAAGTTCTTGATCTCGTTGTCGGTGCGCCCCGGTAGCCGGGCAGCGATCTGAGACCACCTGCAATAATTCCATGCGTCGTAGTACGGTAGATTTTTCATCAGTGAGCAAACGAGATGTTTCTGTCAAGAATTATTATCCAAGCTTAGCTATAGCTATGGTTGTAGTACAAAAGATTAATTAAATAAAAAGGTTAATTAGCTGCATGCACATATATGTCAATGCGCCTTAATTAATCTTCTTTTTATGCATGCATGCATGCATGCATAAGCGCATAAGCATGATTAATCTAGTATTTACTTCCAAAAAAAAATAAAGATAAAATATATATGATTTTCTCCGTTTCAAATTACTTGTTGTTTTACTTAAAAAAATTACTTGTCGTTATAACTTTGCAGTAAGTCAAACATTTCTAACCTTCATCATCAATTCTCTAGAAATTTATACAGTTATTACCATAATAAGATTTATTTTCTAAATTCATTATATATGAGAAATATTTTCATAATATATAATTCACATGTTAAACTGTATACGAATTTTTGAAAATTTATGATGAATATTTGACTTTATACAAAGCTAAAATGAAAAGGTTTTTTTAGGTAAAACGAAAAGCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGGTTAGTTTTACATGTGAGAAAGTACGTAGAGGTAATTAGTCGATGTCATAATCTCATTTCTGGTAAGACAAGGATTAATCAATAATTATGGATGATTGGATCCGACAAATTTGCATATGTCTTTCAGGGTTAATTAGAACGTATACAAGTATGAAGTATCCCTTTCGGTGTCTTTTCAGGCAACTTTTAGTTTCTACGTTACATATATATCAGTTTTGTAATTATGCATGGTGTACGACATTTCATGCAAAATTAAGCAGAAGAAAAAAAAGAATTAATCAAGAAATATTTTGATTGATATATCCAGGACTCATGTTGTTCTCATAGCCCTTTGAGACTTGAGACACATGTCTGTATATATATTAATATTCTAATAATCAAATTTTTTTAACTTATGTCACATATTATAAATGTATATGCATGCATGAGTATATGCACGTCAACGTTTTGCTGTACGTGATCTGTAATGCTTCAGCTGTAGAATACGGAAATTGTACGCTCACGGTAGATCTACCTAAGACAGTTGTGAACTAGGACAGTGTACATGGGAAAAAAATATCGTACGACGTATTGTGTCAAATTCACGTAATCTCTTATATACTTTTTTTTTGGAGAAATGCATGTGTAGATCAGAGCACCACAGAGAATTATAAACAAAATCAACACCATCTCAAAAAAAAAAGAGAAACCAGAGGAAAACAATTAATACACACCCAGAGAGAGATTTTTTTTTAAAAAAAGAACAGTATATATATCTTTTAATTGCGAGGGAAATTCATTGAAAGATTATGCTACATTACTTGCTAGCCCTATCAACACAATATAACAACATTCCAAACGAGAAAACAAAACAAATTAAACACACACAGAAAAAGCTAGCACTTTGTGAAAAACAAGAAACAAATTAATGTAGGAAGAAGACAAGCAAACTACTTAAGAAAAACCGATGAGAAACGAACGAACAAAGAAGAACACACAATATGAACCCCCACATTACAAAGACAATGAAGTAATTAATGAATCAATCTCCTAATATATTAAAGCTTAATTAATCATGGTAATTAATTAATTAGGTACTACTTAGTCGTAGGAGCTTATAGTTAACTGATTAGCTGCACCTGTTGCCGAGGATGGCGTGGAGGTTGACGATGAGGTCCTCCTCCTGCGGCGAGAAGGCGCCGCGCTTGAGGTCGGGGCGGAGGTAGTTGATCCACCGGAGGCGGCAGCTCTTGCCGCAGCGCTGCAGCCCGGCGTTCCTCGCCACGTCGCTCCACGACCCCTGCCCGCTCCGCAGCATGTACGCCACCAGCTTCTCGTCCTCCTCCGGCGACCACAGCCCCTTCCGAACCTTCCCCCCCACCACCGCCGCATTGTTCCCTCCCGCCACACCCAGAACGCCGCCGCCCTTCGCCGCCCCTCCCCCGCCGCCGCAATCCGGCTTCCTCATTGCCGATCT
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| CDS seq | ATGAGGAAGCCGGATTGCGGCGGCGGGGGAGGGGCGGCGAAGGGCGGCGGCGTTCTGGGTGTGGCGGGAGGGAACAATGCGGCGGTGGTGGGGGGGAAGGTTCGGAAGGGGCTGTGGTCGCCGGAGGAGGACGAGAAGCTGGTGGCGTACATGCTGCGGAGCGGGCAGGGGTCGTGGAGCGACGTGGCGAGGAACGCCGGGCTGCAGCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCGCCTTCTCGCCGCAGGAGGAGGACCTCATCGTCAACCTCCACGCCATCCTCGGCAACAGGTGGTCTCAGATCGCTGCCCGGCTACCGGGGCGCACCGACAACGAGATCAAGAACTTCTGGAACTCCACCATCAAGAAGCGCCTCAAGATCTCCTCCTCCTCGGCGTCTCCGGCCACCACCACCGACTGCGCCTCCCCGCCGGAGCACAAGCTCGGCGCCGTCGTCGACCTCGCCGGCGGCGGCGGCGCCACGGACGACGTCGTTGTCGGGACAGCTAATGCTGCCATGAAGAGCATGTGGGTGGATTCCTCGTCGTCGTCGTCGTCGTCTTCCTCGTCGATGCAGAGCCGGCCGTCGATAATGGCGGCGGCGGCGGCGGGGAGGAGCTACGGCGGCCTCCTCCCACTCCCCGACCAGGTCTGCGGCGTCGACACCTCGCCGCCACCGCCGTTCTTCCACGACCACTCCATCTCCATCAAGCAAGCATACTACGGATCAACCGGCGCCCACCACCACCACCACGCGATCGCCACCATGGACGGATCAAGCTTAATAGGAGATCATCACCATCACAGCAGCAGCATCCTCTTTGGCGGCGCATCAGTGCCACCTCTCCTAGACCACCAAACCATTCTCGACGACGACGACGACCACCCTAACAAAACCGGCAGCAACACGACCGCGGCCACACTGAGCAGCAACATCACAGACAACAGCAACAGCAACAAGAACAACAGTGATAATAACAACAACATCAGCAGCAGCTGCTGCATTAGCCTAATGAACAGCAGCAGCAACATGATCTATTGGGAGGGTCACCACCAACAACAGCAGCAGCAGCATCAGATGCTGCAGCAGCAGCAGCAGCACATGAGCAGGAATGTCATGGGAGAGTGGGACTTGGAGGAGCTGATGAAAGATGTGTCATCCTTGCCTTTCCTTGATTTCCAAGTTGAATGA
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| Protein seq | MRKPDCGGGGGAAKGGGVLGVAGGNNAAVVGGKVRKGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIVNLHAILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKISSSSASPATTTDCASPPEHKLGAVVDLAGGGGATDDVVVGTANAAMKSMWVDSSSSSSSSSSSMQSRPSIMAAAAAGRSYGGLLPLPDQVCGVDTSPPPPFFHDHSISIKQAYYGSTGAHHHHHAIATMDGSSLIGDHHHHSSSILFGGASVPPLLDHQTILDDDDDHPNKTGSNTTAATLSSNITDNSNSNKNNSDNNNNISSSCCISLMNSSSNMIYWEGHHQQQQQQHQMLQQQQQHMSRNVMGEWDLEELMKDVSSLPFLDFQVE |
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| Function | Transcription factor MYB46 [UniProtKB/Swiss-Prot:Q9LXV2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0515300 | Os12t0515300-01 | Chr12 | 19991402 | 19994410 | - | irgsp1_rep | ||
| CDS seq | ATGAGGAAGCCGGATTGCGGCGGCGGGGGAGGGGCGGCGAAGGGCGGCGGCGTTCTGGGTGTGGCGGGAGGGAACAATGCGGCGGTGGTGGGGGGGAAGGTTCGGAAGGGGCTGTGGTCGCCGGAGGAGGACGAGAAGCTGGTGGCGTACATGCTGCGGAGCGGGCAGGGGTCGTGGAGCGACGTGGCGAGGAACGCCGGGCTGCAGCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCGCCTTCTCGCCGCAGGAGGAGGACCTCATCGTCAACCTCCACGCCATCCTCGGCAACAGGTGGTCTCAGATCGCTGCCCGGCTACCGGGGCGCACCGACAACGAGATCAAGAACTTCTGGAACTCCACCATCAAGAAGCGCCTCAAGATCTCCTCCTCCTCGGCGTCTCCGGCCACCACCACCGACTGCGCCTCCCCGCCGGAGCACAAGCTCGGCGCCGTCGTCGACCTCGCCGGCGGCGGCGGCGCCACGGACGACGTCGTTGTCGGGACAGCTAATGCTGCCATGAAGAGCATGTGGGTGGATTCCTCGTCGTCGTCGTCGTCGTCTTCCTCGTCGATGCAGAGCCGGCCGTCGATAATGGCGGCGGCGGCGGCGGGGAGGAGCTACGGCGGCCTCCTCCCACTCCCCGACCAGGTCTGCGGCGTCGACACCTCGCCGCCACCGCCGTTCTTCCACGACCACTCCATCTCCATCAAGCAAGCATACTACGGATCAACCGGCGCCCACCACCACCACCACGCGATCGCCACCATGGACGGATCAAGCTTAATAGGAGATCATCACCATCACAGCAGCAGCATCCTCTTTGGCGGCGCATCAGTGCCACCTCTCCTAGACCACCAAACCATTCTCGACGACGACGACGACCACCCTAACAAAACCGGCAGCAACACGACCGCGGCCACACTGAGCAGCAACATCACAGACAACAGCAACAGCAACAAGAACAACAGTGATAATAACAACAACATCAGCAGCAGCTGCTGCATTAGCCTAATGAACAGCAGCAGCAACATGATCTATTGGGAGGGTCACCACCAACAACAGCAGCAGCAGCATCAGATGCTGCAGCAGCAGCAGCAGCACATGAGCAGGAATGTCATGGGAGAGTGGGACTTGGAGGAGCTGATGAAAGATGTGTCATCCTTGCCTTTCCTTGATTTCCAAGTTGAATGA
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| Protein seq | MRKPDCGGGGGAAKGGGVLGVAGGNNAAVVGGKVRKGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIVNLHAILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKISSSSASPATTTDCASPPEHKLGAVVDLAGGGGATDDVVVGTANAAMKSMWVDSSSSSSSSSSSMQSRPSIMAAAAAGRSYGGLLPLPDQVCGVDTSPPPPFFHDHSISIKQAYYGSTGAHHHHHAIATMDGSSLIGDHHHHSSSILFGGASVPPLLDHQTILDDDDDHPNKTGSNTTAATLSSNITDNSNSNKNNSDNNNNISSSCCISLMNSSSNMIYWEGHHQQQQQQHQMLQQQQQHMSRNVMGEWDLEELMKDVSSLPFLDFQVE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0515300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g33070 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015200 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015340 | RBH | 0.0 | 1.307769 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015250 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015050 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014570 | RBH | 0.0 | 0.000000 | 1.867599 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0268300 | RBH | 0.326197 | 0.557226 | 0.094234 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014750 | RBH | 0.0 | 0.135036 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0298700 | RBH | 0.3756615 | 0.0138385 | 0.018994 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0014950 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0015140 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0015070 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015000 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015150 | RBH | 0.0 | 1.639088 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G015050 | RBH | 0.0 | 0.333836 | 0.777086 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014810 | RBH | 0.0 | 0.0 | 0.000000 |
