Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0490100 | OGI:12049940 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:18388482-18391056 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TATGGACGGCCACCATCTCCGCCTACGCGAGGCACGCCTCGTCGTCCTCCTCGCACGCCCTCGAGGTCGCGGGAGAGGCGGTCGCGCTGTTCGCGCTCATGCTCTGGTCGGGCCCGCGGCCGAACGCCTTCACCGTGACCTCCGTGATCAAGTGCTGCTCGAAGGTGCGAGCCGTCCATGAGGGTCTCCAGGTGCACGCGTTCTTGGCGAAGGCCGGGCTGGGCTGCTCCTCCGTGCACGTGGGCGCTGCGTTGCTCGATCTGTACGGGAATATTGGCCTGGTGGGAGATGCAAGGAGGGTGTTCGACGAAATGCCCGTGAAGAACGTGGTGGTCGGGAACACTATGGTGGCGTGCAATGTAAGGGCCGGTGATATGGGAGCCGCGCGAGAGGTGTTTGATGGGATGGCAGAGAGGGACCCAATCTCGTGGAATACACTCATGTCCGGTTATCTGCATTTGGGGGATACTGCCACTGTGAGGGAATTGTTTGATGAGATGACAGTGAGGAATGTGAATAGCTGGAACACGATGATTGCCGCATGTTCGGAGGAAGGATCGTTGGCTGATACAGTCAAGGTTTTCAATAGGATGCGTGCGACAGGGTTCGAGCCTGATGCTGCGACGATGGCTGTTTTGATGTCTGCGTGCGCACAGCTTGGTTCTTTGACAATTGCAGGGCAAGTGCATGGACTTTTACAGAAGAGTTGTGTTGAGATGAATTGCCATGTCCAGAATTCGTTGATTGACATGTATGCCAAGTGCGGTTGCATCAGCCAAGCTCAATTCTTGTTTACTGAGACATATCCAAAGGATACAGTGTCTTATAATGTGATGATCATTGCTTTTGCGCAACATGGACATGCAAGAGATGCATTGGATCTTTTCAATGCGATGGTTGACTCTGGGTTGCAACCTGATGCCGTCACATTTCTTGGCGTACTATCAGCTTGTGCTCATGCCGGGCTAGTGGAATACGGAAAGAACTACTTTGAATTGATGAAAACCACATATGCAGTTCAGCAATCCCCAGACCACTACGCTTGTGTGGTTGATCTATATGGTCGAGCTGGGCTCATTGAAGAAGCGCACTGTTTCGTGAAGACAATGCCAGTGAAACCACATGCAGGTGTGTGGGGAGCATTGCTCAATGCCTGCAGGAAGCATTGCCATGTTGATGTCGGTGAGATTGCAGCGAAGGAACTCATCAGGATTGAACCCAAGAATCCTGGCAACTATGTTCTCCTCAGAAACACCCTAGCTCGAGGCCAGCAATGGGATGCTGTTGAGGATGTGCAGCTATCGATGAGGAGAAAGGTTATTGACAAAACAGCAGGGTGCAGCTGGGTTGAAGTGGATAGTGTTGTTCATGAGTTCTTAGCAGGAGACTTCTACCATCCCAAATTTGATGAGATTTATACTATCCTGGAGCACCTGTATATGGAACTGACATAAGGTTTATGATATGGAAGATACATATCTGGATGAAGAGGATCTGTGCATTGTAACGAGAAATTATACCTGCACAAAATATTATAACGATACTATCAGAGACGTAGAGGTAATGCAAATTGCAGACTTATTGACAAGCAGAGAAGTATAGTAACAAATTGTTTGTCCACTCCATGCACAATGCAGACTTCCAGTCATTTGCATCTTAACGGATTGTGTGCTGAGGATGTTCAGGGGTGCCCGGTTTCCTCATTGCTACATTTGGAAGGAAAGGCATTACTTGATAGTTCCAGAATGGTGTGATGATATTCTTGTTACTAACAGCTGTTGCTGTCAGATTGTCACATTGGATGTCAAAAGAATATCAAATCTGCTTTCAAGGTATGTTTGATTTTTATGGCACTTATGGGTGTCAAATCCATTTCCTTTGCATTGTTTTATCAAATCTAAGTGATAAATTTCCTCATTCACTCCAAAAATGGTTCACAGCTTAAACTGAGGAAGTTACTGCCATATTTCCCAGAGGCTGGAGAGACCCCTGCACTCAAGGGGGCCATCACCACACAGTTGGTGCTGAATACTAAGAACACAGGCTTCTTGCTGCATATGGATTATGAAATATGATATGCTTGGGGTTGAGCCTCTGCTCTGCCGCTTTCCTGGGTCACCAAGCCAGCCTCTCCAACTATTCTGCTTCTGGACTGGACGACTTTGGTTCCTTTGACTTGTTCACACAGACATGCGACACGTTTTGGATACCCATCTTCGATGTAGGGTAAGTGCCATCTAAATATCGGTATGTTACCTGGATAATTACACCCAAACATTGTGTGCATTGTGTCTAACAGATAATGATCATTACTTATTCTGCAGCTCAGGCATTTCATCCGAGGCACTCCTCAATGTAGTCGAGAACAAGGTGTGTTTGGTAACTTTGGCAGATAGGCACCAAGCAAATAAAAATTTTGGGAATATTTTGAATTATTTGGATGATAGGAAAAATATCGAAAATCAAGACAGAAGGAGAAAGCATGAGGTCTTACCTTACGTTTGCTTTTTTGTAAAAATTCATACGAAACAAGCTGTTCCACAGGGATTTAATTGTATATGTTCTTTTGGACTTC
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| CDS seq | ATGCTCTGGTCGGGCCCGCGGCCGAACGCCTTCACCGTGACCTCCGTGATCAAGTGCTGCTCGAAGGTGCGAGCCGTCCATGAGGGTCTCCAGGTGCACGCGTTCTTGGCGAAGGCCGGGCTGGGCTGCTCCTCCGTGCACGTGGGCGCTGCGTTGCTCGATCTGTACGGGAATATTGGCCTGGTGGGAGATGCAAGGAGGGTGTTCGACGAAATGCCCGTGAAGAACGTGGTGGTCGGGAACACTATGGTGGCGTGCAATGTAAGGGCCGGTGATATGGGAGCCGCGCGAGAGGTGTTTGATGGGATGGCAGAGAGGGACCCAATCTCGTGGAATACACTCATGTCCGGTTATCTGCATTTGGGGGATACTGCCACTGTGAGGGAATTGTTTGATGAGATGACAGTGAGGAATGTGAATAGCTGGAACACGATGATTGCCGCATGTTCGGAGGAAGGATCGTTGGCTGATACAGTCAAGGTTTTCAATAGGATGCGTGCGACAGGGTTCGAGCCTGATGCTGCGACGATGGCTGTTTTGATGTCTGCGTGCGCACAGCTTGGTTCTTTGACAATTGCAGGGCAAGTGCATGGACTTTTACAGAAGAGTTGTGTTGAGATGAATTGCCATGTCCAGAATTCGTTGATTGACATGTATGCCAAGTGCGGTTGCATCAGCCAAGCTCAATTCTTGTTTACTGAGACATATCCAAAGGATACAGTGTCTTATAATGTGATGATCATTGCTTTTGCGCAACATGGACATGCAAGAGATGCATTGGATCTTTTCAATGCGATGGTTGACTCTGGGTTGCAACCTGATGCCGTCACATTTCTTGGCGTACTATCAGCTTGTGCTCATGCCGGGCTAGTGGAATACGGAAAGAACTACTTTGAATTGATGAAAACCACATATGCAGTTCAGCAATCCCCAGACCACTACGCTTGTGTGGTTGATCTATATGGTCGAGCTGGGCTCATTGAAGAAGCGCACTGTTTCGTGAAGACAATGCCAGTGAAACCACATGCAGGTGTGTGGGGAGCATTGCTCAATGCCTGCAGGAAGCATTGCCATGTTGATGTCGGTGAGATTGCAGCGAAGGAACTCATCAGGATTGAACCCAAGAATCCTGGCAACTATGTTCTCCTCAGAAACACCCTAGCTCGAGGCCAGCAATGGGATGCTGTTGAGGATGTGCAGCTATCGATGAGGAGAAAGGTTATTGACAAAACAGCAGGGTGCAGCTGGGTTGAAGTGGATAGTGTTGTTCATGAGTTCTTAGCAGGAGACTTCTACCATCCCAAATTTGATGAGATTTATACTATCCTGGAGCACCTGTATATGGAACTGACATAA
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| Protein seq | MLWSGPRPNAFTVTSVIKCCSKVRAVHEGLQVHAFLAKAGLGCSSVHVGAALLDLYGNIGLVGDARRVFDEMPVKNVVVGNTMVACNVRAGDMGAAREVFDGMAERDPISWNTLMSGYLHLGDTATVRELFDEMTVRNVNSWNTMIAACSEEGSLADTVKVFNRMRATGFEPDAATMAVLMSACAQLGSLTIAGQVHGLLQKSCVEMNCHVQNSLIDMYAKCGCISQAQFLFTETYPKDTVSYNVMIIAFAQHGHARDALDLFNAMVDSGLQPDAVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAHCFVKTMPVKPHAGVWGALLNACRKHCHVDVGEIAAKELIRIEPKNPGNYVLLRNTLARGQQWDAVEDVQLSMRRKVIDKTAGCSWVEVDSVVHEFLAGDFYHPKFDEIYTILEHLYMELT |
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| Function | Pentatricopeptide repeat-containing protein At3g29230 [UniProtKB/Swiss-Prot:Q9LS72] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0490100 | Os12t0490100-01 | Chr12 | 18388482 | 18391056 | + | irgsp1_rep | ||
| CDS seq | ATGCTCTGGTCGGGCCCGCGGCCGAACGCCTTCACCGTGACCTCCGTGATCAAGTGCTGCTCGAAGGTGCGAGCCGTCCATGAGGGTCTCCAGGTGCACGCGTTCTTGGCGAAGGCCGGGCTGGGCTGCTCCTCCGTGCACGTGGGCGCTGCGTTGCTCGATCTGTACGGGAATATTGGCCTGGTGGGAGATGCAAGGAGGGTGTTCGACGAAATGCCCGTGAAGAACGTGGTGGTCGGGAACACTATGGTGGCGTGCAATGTAAGGGCCGGTGATATGGGAGCCGCGCGAGAGGTGTTTGATGGGATGGCAGAGAGGGACCCAATCTCGTGGAATACACTCATGTCCGGTTATCTGCATTTGGGGGATACTGCCACTGTGAGGGAATTGTTTGATGAGATGACAGTGAGGAATGTGAATAGCTGGAACACGATGATTGCCGCATGTTCGGAGGAAGGATCGTTGGCTGATACAGTCAAGGTTTTCAATAGGATGCGTGCGACAGGGTTCGAGCCTGATGCTGCGACGATGGCTGTTTTGATGTCTGCGTGCGCACAGCTTGGTTCTTTGACAATTGCAGGGCAAGTGCATGGACTTTTACAGAAGAGTTGTGTTGAGATGAATTGCCATGTCCAGAATTCGTTGATTGACATGTATGCCAAGTGCGGTTGCATCAGCCAAGCTCAATTCTTGTTTACTGAGACATATCCAAAGGATACAGTGTCTTATAATGTGATGATCATTGCTTTTGCGCAACATGGACATGCAAGAGATGCATTGGATCTTTTCAATGCGATGGTTGACTCTGGGTTGCAACCTGATGCCGTCACATTTCTTGGCGTACTATCAGCTTGTGCTCATGCCGGGCTAGTGGAATACGGAAAGAACTACTTTGAATTGATGAAAACCACATATGCAGTTCAGCAATCCCCAGACCACTACGCTTGTGTGGTTGATCTATATGGTCGAGCTGGGCTCATTGAAGAAGCGCACTGTTTCGTGAAGACAATGCCAGTGAAACCACATGCAGGTGTGTGGGGAGCATTGCTCAATGCCTGCAGGAAGCATTGCCATGTTGATGTCGGTGAGATTGCAGCGAAGGAACTCATCAGGATTGAACCCAAGAATCCTGGCAACTATGTTCTCCTCAGAAACACCCTAGCTCGAGGCCAGCAATGGGATGCTGTTGAGGATGTGCAGCTATCGATGAGGAGAAAGGTTATTGACAAAACAGCAGGGTGCAGCTGGGTTGAAGTGGATAGTGTTGTTCATGAGTTCTTAGCAGGAGACTTCTACCATCCCAAATTTGATGAGATTTATACTATCCTGGAGCACCTGTATATGGAACTGACATAA
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| Protein seq | MLWSGPRPNAFTVTSVIKCCSKVRAVHEGLQVHAFLAKAGLGCSSVHVGAALLDLYGNIGLVGDARRVFDEMPVKNVVVGNTMVACNVRAGDMGAAREVFDGMAERDPISWNTLMSGYLHLGDTATVRELFDEMTVRNVNSWNTMIAACSEEGSLADTVKVFNRMRATGFEPDAATMAVLMSACAQLGSLTIAGQVHGLLQKSCVEMNCHVQNSLIDMYAKCGCISQAQFLFTETYPKDTVSYNVMIIAFAQHGHARDALDLFNAMVDSGLQPDAVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAHCFVKTMPVKPHAGVWGALLNACRKHCHVDVGEIAAKELIRIEPKNPGNYVLLRNTLARGQQWDAVEDVQLSMRRKVIDKTAGCSWVEVDSVVHEFLAGDFYHPKFDEIYTILEHLYMELT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0490100 | RBH | 0.094813 | 0.0 | 0.463469 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g30620 | RBH | 0.064068 | 0.0 | 0.152800 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013720 | RBH | 0.0 | 0.000000 | 0.307475 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0013900 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0013770 | RBH | 0.000000 | 0.0 | 0.584891 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013600 | RBH | 0.041999 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0013260 | RBH | 0.520679 | 0.0 | 1.153833 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0252000 | RBH | 0.7670525 | 1.5078905 | 0.312942 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013430 | RBH | 0.049365 | 0.0 | 0.062880 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0273800 | RBH | 0.636583 | 1.868204 | 2.503133 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0013390 | RBH | 0.048789 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0013740 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0013590 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0013580 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013730 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G013470 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0013310 | RBH | 0.565771 | 0.0 | 0.0 |
