Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0461050 | OGI:12045300 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:16273918-16274583 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCACTTCATATTTATCAAGTTCCTCCCAAATATTATTAGTTTTAGGAAAAAGTACACCGAACGTCCCGCAACTTGTCATCGGGATAAAAAAACATTCTCGAACCGCAAAACTAGATATGCGAGGTCCCTTAACTATACAAAACCGGTCACAATAGTTCCCTCAGCGGTTGTGATCCCGGTTTTGTCCTACATGGCTGCTGAGTCAGCGTGGGATCCACGTGGACCCCACGTGTCAGCCTCCTCTTTCTTTCCCCTCTTCTCTTTCACTCGCCCTCCTCGTCGTGCATGCTCAGCTCCTACCGCCGACGCTCCGGCCACTCGGTGCTCCGCCTCTTCATGTGGGCGGCCTCCACGCTCTTCCTCCCGCTCGTCTCCTACACCGTCTCCGTCGCCGCCAAGTGGGACGCCGCGCGCCGAACACCACGGCGTCGACGAGCGTCCCGCTCCTCCTCGCCGAGGAGGCCGTCGAGCACGAACGGCACCGCACGGCGAGAGCCCGTTCGCGTACGCAGATGACCCCTGCAGCGCCAGCTACCCGCTGATGCAGAAGATGCGCGCCGTCCTCATCGAGCACGCGCTGGCCAACGGCGAGGCGGAGCGCAACGTCGACTCCTCGGTGTTCGCCAAGGTCACGACGTTCGAGGAGGAGCGGCAGTTTCAGTAG
More
|
||||||||||
| CDS seq | ATGCACTTCATATTTATCAAGTTCCTCCCAAATATTATTAGTTTTAGGAAAAAGTACACCGAACGTCCCGCAACTTGTCATCGGGATAAAAAAACATTCTCGAACCGCAAAACTAGATATGCGAGGTCCCTTAACTATACAAAACCGGTCACAATAGTTCCCTCAGCGGTTGTGATCCCGGTTTTGTCCTACATGGCTGCTGAGTCAGCGTGGGATCCACGTGGACCCCACGTGTCAGCCTCCTCTTTCTTTCCCCTCTTCTCTTTCACTCGCCCTCCTCGTCGTGCATGCTCAGCTCCTACCGCCGACGCTCCGGCCACTCGGTGCTCCGCCTCTTCATGTGGGCGGCCTCCACGCTCTTCCTCCCGCTCGTCTCCTACACCGTCTCCGTCGCCGCCAAGTGGGACGCCGCGCGCCGAACACCACGGCGTCGACGAGCGTCCCGCTCCTCCTCGCCGAGGAGGCCGTCGAGCACGAACGGCACCGCACGGCGAGAGCCCGTTCGCGTACGCAGATGACCCCTGCAGCGCCAGCTACCCGCTGATGCAGAAGATGCGCGCCGTCCTCATCGAGCACGCGCTGGCCAACGGCGAGGCGGAGCGCAACGTCGACTCCTCGGTGTTCGCCAAGGTCACGACGTTCGAGGAGGAGCGGCAGTTTCAGTAG
More
|
||||||||||
| Protein seq | MHFIFIKFLPNIISFRKKYTERPATCHRDKKTFSNRKTRYARSLNYTKPVTIVPSAVVIPVLSYMAAESAWDPRGPHVSASSFFPLFSFTRPPRRACSAPTADAPATRCSASSCGRPPRSSSRSSPTPSPSPPSGTPRAEHHGVDERPAPPRRGGRRARTAPHGESPFAYADDPCSASYPLMQKMRAVLIEHALANGEAERNVDSSVFAKVTTFEEERQFQ |
||||||||||
| Function | Phenylalanine ammonia-lyase [UniProtKB/Swiss-Prot:Q43210] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0461050 | Os12t0461050-00 | Chr12 | 16273918 | 16274583 | + | irgsp1_rep | ||
| CDS seq | ATGCACTTCATATTTATCAAGTTCCTCCCAAATATTATTAGTTTTAGGAAAAAGTACACCGAACGTCCCGCAACTTGTCATCGGGATAAAAAAACATTCTCGAACCGCAAAACTAGATATGCGAGGTCCCTTAACTATACAAAACCGGTCACAATAGTTCCCTCAGCGGTTGTGATCCCGGTTTTGTCCTACATGGCTGCTGAGTCAGCGTGGGATCCACGTGGACCCCACGTGTCAGCCTCCTCTTTCTTTCCCCTCTTCTCTTTCACTCGCCCTCCTCGTCGTGCATGCTCAGCTCCTACCGCCGACGCTCCGGCCACTCGGTGCTCCGCCTCTTCATGTGGGCGGCCTCCACGCTCTTCCTCCCGCTCGTCTCCTACACCGTCTCCGTCGCCGCCAAGTGGGACGCCGCGCGCCGAACACCACGGCGTCGACGAGCGTCCCGCTCCTCCTCGCCGAGGAGGCCGTCGAGCACGAACGGCACCGCACGGCGAGAGCCCGTTCGCGTACGCAGATGACCCCTGCAGCGCCAGCTACCCGCTGATGCAGAAGATGCGCGCCGTCCTCATCGAGCACGCGCTGGCCAACGGCGAGGCGGAGCGCAACGTCGACTCCTCGGTGTTCGCCAAGGTCACGACGTTCGAGGAGGAGCGGCAGTTTCAGTAG
More
|
|||||||
| Protein seq | MHFIFIKFLPNIISFRKKYTERPATCHRDKKTFSNRKTRYARSLNYTKPVTIVPSAVVIPVLSYMAAESAWDPRGPHVSASSFFPLFSFTRPPRRACSAPTADAPATRCSASSCGRPPRSSSRSSPTPSPSPPSGTPRAEHHGVDERPAPPRRGGRRARTAPHGESPFAYADDPCSASYPLMQKMRAVLIEHALANGEAERNVDSSVFAKVTTFEEERQFQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0461050 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0461300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0012570 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0012350 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G012310 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
