Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0171600 | OGI:12009710 | 10/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:3636454-3637403 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGGACGAGACAAACCCTAAACCCGCCGGCGGCGTGCGGCGGCGGCGGTAATGGAGGTGGATATGGAAGCGGAGGGTGCGAGCGGCGAGCTCGGCCACAAGAGGGCGGATCTGGAGAAGCCCACGGAGGAGGAGAGAGCTTCTAACGGCGGCGGCGACGCCGCCAAGACGCCGTCGGAGGATCACCACGACAGTGCCCGCCGCCGCGCCATGGCGATGGAGAATGACGACGACGACGACGAGTACTACGACGAACCCCTTCCGAATCCCTTGGACGCCTACCGCCAGAGCTGGGCCCGTTCCTACGGCACCAATGGCGCCACCTTCGAGGACGAGAGTATGCCTCTTCTTGAATTCTCTGCTTGAATTGAATTTCTTGGCGACTTGATGCGATTAGTTCCAAAAAAAACTTGATGCGATTAGTTCAACCGTGGAGCAAATTGATTGATTTTTTGTTTGTTTTGTGGGGGGAAAAATTGGGCAGCGGATCTCCCTCCTATGCCAAACACAGACATTCCAGTGCTGCCCCCTTCTGCGCAGCCTATGGAAACAATGCAGGTCTTCACGGTGAAGGTGACCCAGATCACCGGCGGCCTCCGGTGGCCGCTCGGCGTCTACGGCGTGGTCGCCGTGCGAGACTCCATGGACCACAAGCGCAACGTCCTCTTCCGCCGCGGCAGGAACGAATGCCAGACCCTAACTTCGCTGCAGGCATGTGCAAATTGTTCCTACCCCATTATCTTATAAAAGTTGCTCGGTATCAAAATTTACGACTTAAACATGTTGCGTTGGAATATATGTCTTAGAAATATAAGTTAATTGTTTGTTTGGAATCACAGTAAAAGATATTCATTTGGATGTTAACGTGATATTCGATTAAAGTTAACATTAACATTCAGGGGTTTGTCCGCCGCTGACTAGTGGTGGTTTACAGGCCGCCAGTTCGACGAC
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| CDS seq | ATGGAGGTGGATATGGAAGCGGAGGGTGCGAGCGGCGAGCTCGGCCACAAGAGGGCGGATCTGGAGAAGCCCACGGAGGAGGAGAGAGCTTCTAACGGCGGCGGCGACGCCGCCAAGACGCCGTCGGAGGATCACCACGACAGTGCCCGCCGCCGCGCCATGGCGATGGAGAATGACGACGACGACGACGAGTACTACGACGAACCCCTTCCGAATCCCTTGGACGCCTACCGCCAGAGCTGGGCCCGTTCCTACGGCACCAATGGCGCCACCTTCGAGGACGAGACGGATCTCCCTCCTATGCCAAACACAGACATTCCAGTGCTGCCCCCTTCTGCGCAGCCTATGGAAACAATGCAGGTCTTCACGGTGAAGGTGACCCAGATCACCGGCGGCCTCCGGTGGCCGCTCGGCGTCTACGGCGTGGTCGCCGTGCGAGACTCCATGGACCACAAGCGCAACGTCCTCTTCCGCCGCGGCAGGAACGAATGCCAGACCCTAACTTCGCTGCAGGCATGTGCAAATTGTTCCTACCCCATTATCTTATAA
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| Protein seq | MEVDMEAEGASGELGHKRADLEKPTEEERASNGGGDAAKTPSEDHHDSARRRAMAMENDDDDDEYYDEPLPNPLDAYRQSWARSYGTNGATFEDETDLPPMPNTDIPVLPPSAQPMETMQVFTVKVTQITGGLRWPLGVYGVVAVRDSMDHKRNVLFRRGRNECQTLTSLQACANCSYPIIL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0171600 | Os12t0171600-01 | Chr12 | 3636454 | 3637403 | + | irgsp1_rep | ||
| CDS seq | ATGGAGGTGGATATGGAAGCGGAGGGTGCGAGCGGCGAGCTCGGCCACAAGAGGGCGGATCTGGAGAAGCCCACGGAGGAGGAGAGAGCTTCTAACGGCGGCGGCGACGCCGCCAAGACGCCGTCGGAGGATCACCACGACAGTGCCCGCCGCCGCGCCATGGCGATGGAGAATGACGACGACGACGACGAGTACTACGACGAACCCCTTCCGAATCCCTTGGACGCCTACCGCCAGAGCTGGGCCCGTTCCTACGGCACCAATGGCGCCACCTTCGAGGACGAGACGGATCTCCCTCCTATGCCAAACACAGACATTCCAGTGCTGCCCCCTTCTGCGCAGCCTATGGAAACAATGCAGGTCTTCACGGTGAAGGTGACCCAGATCACCGGCGGCCTCCGGTGGCCGCTCGGCGTCTACGGCGTGGTCGCCGTGCGAGACTCCATGGACCACAAGCGCAACGTCCTCTTCCGCCGCGGCAGGAACGAATGCCAGACCCTAACTTCGCTGCAGGCATGTGCAAATTGTTCCTACCCCATTATCTTATAA
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| Protein seq | MEVDMEAEGASGELGHKRADLEKPTEEERASNGGGDAAKTPSEDHHDSARRRAMAMENDDDDDEYYDEPLPNPLDAYRQSWARSYGTNGATFEDETDLPPMPNTDIPVLPPSAQPMETMQVFTVKVTQITGGLRWPLGVYGVVAVRDSMDHKRNVLFRRGRNECQTLTSLQACANCSYPIIL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0171600 | RBH | 0.535798 | 0.000000 | 0.743110 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g07380 | RBH | 0.362659 | 0.000000 | 0.191053 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0004770 | RBH | 0.0 | 0.0 | 1.335122 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0005020 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0005010 | RBH | 0.565822 | 3.148960 | 2.576352 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0004850 | RBH | 0.0 | 0.165043 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0005110 | SBH | 0.0 | 0.0 | 0.820578 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0061700 | RBH | 0 | 0.1090915 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0005090 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0066200 | RBH | 2.7826015 | 6.8846285 | 13.8335235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0004900 | SBH | 0.108296 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0005160 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0004970 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0004950 | RBH | 0.0 | 0.0 | 0.418278 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004940 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G004920 | SBH | 0.0 | 0.0 | 0.263432 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0005010 | RBH | 0.0 | 0.000000 | 0.0 |
