Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0135200 | OGI:11006140 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:1732197-1733659 | ||||||||
| Gene Symbol | OsFbox641, Os_F0319 | ||||||||||
| DNA seq | GATTCCCCACGTCCAATCACAACCCACCTCGCTCCCCGAGCAGCAGCTGAGCTCCCAATCCGGCAATCCGCCATGCCCGCCGCCGAGAGCTGCCACTCCCGCAGCCTCTCGTGGCTCGTCAAGTCCTGCATCCCCGCCGACCCCGCCCGCCACATCGCTGTCCCCGTTCTTTGCCCCACCCCGCAACCGCCGCCTCCCTCGTCGCCGCCGGCACCCCCAATCTCCGCCCTCCCCGACGACCTCCTCCTCGAGTGCCTCGCCCGCGTCCCCCGCGCCTCCATCCCTCCGCTCCCCGCCGTCTCCCGCCGCTTCGCCACGCTCCTCGCCTCCGACGCCTTCCTCCACCTCCGCCGCGCCCACGCCCACCTCCGCCCCTCCCTCCTCGGCCTCTCCGTCTCCGACAACGGCTGCATCGCGCAGGCGCTGCTCCGGTTTGAATCCTCCGTGCCCGTGCTCGAGGTCGCCGCGCTGCCGTTGCCCCCGACCCTGCTGCATTGCGGCGGCTCCGTGTTCGCGCACGCCCGCGCGGTCGTGCTGGGTCGGGATGTCTTCCTCATCGGCCGCGGGGCGACGCTGCGCGTCGACGCGCTCACCGGCGCGGCCCGCGCGTGCGCGCCCACGCTCTTCCCGCGGAAGAAGTTCGCCGCTGCCGCCGTGGGCGACCGGATCTACGTCGCCGGCGGGTCCGCGCGCACCGCGGTGGTCGAGGAGTACGACCCGGAGGCTGACGCGTGGCGCGTGGTCGGCGAGGCGCCGCGGCGGAGGTACGGGTGCGCCGGCGCGAGCGCGGGAGGCGTGTTCTACGTCGCCGGGGGCGTCGCGGTGTCCGGCGAGGGCGCGCGGGCGCTCGAGGCGCACGTGTGCGCCGGGTCGGTGGACGCGCTGCACGTCGCGTCCGGCGCCTGGGCGCGCCCCCGTGCGCTCCCCGGCGGCGGCTGCGTCGTGGGGGCGTGCGGCGTCGGTGACCACCTGTACATGGTGGCGAGCCACGCGGTGGAGCTCTCCTTCTGGAGGTGGTGCGGCGCCACCGGCCGTGCCGGTGACGGCAGAGGCTGGGGCGGGTGGGTGGCGCTTGAGGCGCCGCCGATGCCGAGGGGGTCGGTGGGGCTCGGCATGGCGGTGCGCGTGGCGATGGCCGGCCTAGGAACCAACAGGGTGGCGGCCGTGGTGAGCGCTGCGGCCGTGAGGGGTCACAATGCCGGCGGCGGCGCGTTGGAAGGGATGGTGCTGGTGTACGACATCGCCGGCGGCAAGTGGAGCCGCGCGCCGGACCTGCCGCCAGGGTTCCGCCGCGCCGCGTGCGCCGGCGTCGAGTGCTGAGAATGTTGGTAGATGTGGTCCCCGCAGTTCAGTGAGATTCGCGCTATTTGGTGGGTGGATAGGATAGATTGATGCTAATGTCAAGTAACATGGCGCCATCGTGGGATTGTTTGTTGAACAGCAACTTGATCGGATGCTATTAC
More
|
||||||||||
| CDS seq | ATGCCCGCCGCCGAGAGCTGCCACTCCCGCAGCCTCTCGTGGCTCGTCAAGTCCTGCATCCCCGCCGACCCCGCCCGCCACATCGCTGTCCCCGTTCTTTGCCCCACCCCGCAACCGCCGCCTCCCTCGTCGCCGCCGGCACCCCCAATCTCCGCCCTCCCCGACGACCTCCTCCTCGAGTGCCTCGCCCGCGTCCCCCGCGCCTCCATCCCTCCGCTCCCCGCCGTCTCCCGCCGCTTCGCCACGCTCCTCGCCTCCGACGCCTTCCTCCACCTCCGCCGCGCCCACGCCCACCTCCGCCCCTCCCTCCTCGGCCTCTCCGTCTCCGACAACGGCTGCATCGCGCAGGCGCTGCTCCGGTTTGAATCCTCCGTGCCCGTGCTCGAGGTCGCCGCGCTGCCGTTGCCCCCGACCCTGCTGCATTGCGGCGGCTCCGTGTTCGCGCACGCCCGCGCGGTCGTGCTGGGTCGGGATGTCTTCCTCATCGGCCGCGGGGCGACGCTGCGCGTCGACGCGCTCACCGGCGCGGCCCGCGCGTGCGCGCCCACGCTCTTCCCGCGGAAGAAGTTCGCCGCTGCCGCCGTGGGCGACCGGATCTACGTCGCCGGCGGGTCCGCGCGCACCGCGGTGGTCGAGGAGTACGACCCGGAGGCTGACGCGTGGCGCGTGGTCGGCGAGGCGCCGCGGCGGAGGTACGGGTGCGCCGGCGCGAGCGCGGGAGGCGTGTTCTACGTCGCCGGGGGCGTCGCGGTGTCCGGCGAGGGCGCGCGGGCGCTCGAGGCGCACGTGTGCGCCGGGTCGGTGGACGCGCTGCACGTCGCGTCCGGCGCCTGGGCGCGCCCCCGTGCGCTCCCCGGCGGCGGCTGCGTCGTGGGGGCGTGCGGCGTCGGTGACCACCTGTACATGGTGGCGAGCCACGCGGTGGAGCTCTCCTTCTGGAGGTGGTGCGGCGCCACCGGCCGTGCCGGTGACGGCAGAGGCTGGGGCGGGTGGGTGGCGCTTGAGGCGCCGCCGATGCCGAGGGGGTCGGTGGGGCTCGGCATGGCGGTGCGCGTGGCGATGGCCGGCCTAGGAACCAACAGGGTGGCGGCCGTGGTGAGCGCTGCGGCCGTGAGGGGTCACAATGCCGGCGGCGGCGCGTTGGAAGGGATGGTGCTGGTGTACGACATCGCCGGCGGCAAGTGGAGCCGCGCGCCGGACCTGCCGCCAGGGTTCCGCCGCGCCGCGTGCGCCGGCGTCGAGTGCTGA
More
|
||||||||||
| Protein seq | MPAAESCHSRSLSWLVKSCIPADPARHIAVPVLCPTPQPPPPSSPPAPPISALPDDLLLECLARVPRASIPPLPAVSRRFATLLASDAFLHLRRAHAHLRPSLLGLSVSDNGCIAQALLRFESSVPVLEVAALPLPPTLLHCGGSVFAHARAVVLGRDVFLIGRGATLRVDALTGAARACAPTLFPRKKFAAAAVGDRIYVAGGSARTAVVEEYDPEADAWRVVGEAPRRRYGCAGASAGGVFYVAGGVAVSGEGARALEAHVCAGSVDALHVASGAWARPRALPGGGCVVGACGVGDHLYMVASHAVELSFWRWCGATGRAGDGRGWGGWVALEAPPMPRGSVGLGMAVRVAMAGLGTNRVAAVVSAAAVRGHNAGGGALEGMVLVYDIAGGKWSRAPDLPPGFRRAACAGVEC |
||||||||||
| Function | F-box/kelch-repeat protein At5g26960 [UniProtKB/Swiss-Prot:Q6NPN5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0135200 | Os12t0135200-01 | Chr12 | 1732197 | 1733659 | + | irgsp1_rep | ||
| CDS seq | ATGCCCGCCGCCGAGAGCTGCCACTCCCGCAGCCTCTCGTGGCTCGTCAAGTCCTGCATCCCCGCCGACCCCGCCCGCCACATCGCTGTCCCCGTTCTTTGCCCCACCCCGCAACCGCCGCCTCCCTCGTCGCCGCCGGCACCCCCAATCTCCGCCCTCCCCGACGACCTCCTCCTCGAGTGCCTCGCCCGCGTCCCCCGCGCCTCCATCCCTCCGCTCCCCGCCGTCTCCCGCCGCTTCGCCACGCTCCTCGCCTCCGACGCCTTCCTCCACCTCCGCCGCGCCCACGCCCACCTCCGCCCCTCCCTCCTCGGCCTCTCCGTCTCCGACAACGGCTGCATCGCGCAGGCGCTGCTCCGGTTTGAATCCTCCGTGCCCGTGCTCGAGGTCGCCGCGCTGCCGTTGCCCCCGACCCTGCTGCATTGCGGCGGCTCCGTGTTCGCGCACGCCCGCGCGGTCGTGCTGGGTCGGGATGTCTTCCTCATCGGCCGCGGGGCGACGCTGCGCGTCGACGCGCTCACCGGCGCGGCCCGCGCGTGCGCGCCCACGCTCTTCCCGCGGAAGAAGTTCGCCGCTGCCGCCGTGGGCGACCGGATCTACGTCGCCGGCGGGTCCGCGCGCACCGCGGTGGTCGAGGAGTACGACCCGGAGGCTGACGCGTGGCGCGTGGTCGGCGAGGCGCCGCGGCGGAGGTACGGGTGCGCCGGCGCGAGCGCGGGAGGCGTGTTCTACGTCGCCGGGGGCGTCGCGGTGTCCGGCGAGGGCGCGCGGGCGCTCGAGGCGCACGTGTGCGCCGGGTCGGTGGACGCGCTGCACGTCGCGTCCGGCGCCTGGGCGCGCCCCCGTGCGCTCCCCGGCGGCGGCTGCGTCGTGGGGGCGTGCGGCGTCGGTGACCACCTGTACATGGTGGCGAGCCACGCGGTGGAGCTCTCCTTCTGGAGGTGGTGCGGCGCCACCGGCCGTGCCGGTGACGGCAGAGGCTGGGGCGGGTGGGTGGCGCTTGAGGCGCCGCCGATGCCGAGGGGGTCGGTGGGGCTCGGCATGGCGGTGCGCGTGGCGATGGCCGGCCTAGGAACCAACAGGGTGGCGGCCGTGGTGAGCGCTGCGGCCGTGAGGGGTCACAATGCCGGCGGCGGCGCGTTGGAAGGGATGGTGCTGGTGTACGACATCGCCGGCGGCAAGTGGAGCCGCGCGCCGGACCTGCCGCCAGGGTTCCGCCGCGCCGCGTGCGCCGGCGTCGAGTGCTGA
More
|
|||||||
| Protein seq | MPAAESCHSRSLSWLVKSCIPADPARHIAVPVLCPTPQPPPPSSPPAPPISALPDDLLLECLARVPRASIPPLPAVSRRFATLLASDAFLHLRRAHAHLRPSLLGLSVSDNGCIAQALLRFESSVPVLEVAALPLPPTLLHCGGSVFAHARAVVLGRDVFLIGRGATLRVDALTGAARACAPTLFPRKKFAAAAVGDRIYVAGGSARTAVVEEYDPEADAWRVVGEAPRRRYGCAGASAGGVFYVAGGVAVSGEGARALEAHVCAGSVDALHVASGAWARPRALPGGGCVVGACGVGDHLYMVASHAVELSFWRWCGATGRAGDGRGWGGWVALEAPPMPRGSVGLGMAVRVAMAGLGTNRVAAVVSAAAVRGHNAGGGALEGMVLVYDIAGGKWSRAPDLPPGFRRAACAGVEC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0135200 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04130 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0138700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002380 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002580 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002600 | RBH | 0.200259 | 2.116756 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002410 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002640 | RBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0029800 | RBH | 0.287116 | 0.283769 | 0.253102 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002620 | RBH | 0.0 | 0.071283 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0031600 | RBH | 0.4138335 | 0.0888275 | 3.1820695 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002410 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002650 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002570 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002580 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002470 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002730 | RBH | 0.0 | 0.0 | 0.0 |
