Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0116600 | OGI:12002710 | 13/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:817004-820412 | ||||||||
| Gene Symbol | WRKY104, OsWRKY104, OsWRKY89, WRKY95, OsWRKY95 | ||||||||||
| DNA seq | GACCGCGGAAACATCTTCAATTTTTATAATAGTATAATAATAGCTTATACACATGCTTCTTAATTTCAGGTTTACTTCTTAGTCATGAGCAAAATGCTATGTATTTTTACCAGGTCACAACTTATCATTACAGCACATCCTGAAAGAAACTCCTAGCTAGCTTATAGCTAACATCAAGTCATCATCCCCATATGCATATTGGACTGTGCTCACATCTTATTGAATCATCGAACGTCCAATGCTCAGAACCCAATGGTGAGTTCACAATAAACTCGAAGGCTCTCTCCAATTCAAAATCTATCAAATACTCTGGCATATTTTGTACCATACACAAGTTTTCAAATCTTTCATCTTGAACTTCATGGGCTTCGTGTTCAAGTGTAGGGCTATTGCATTCGTTTTGATTGATAGGTTCCATACTGTGATGGGCTGTGTCGACAACATATGGATTGGCTATGCCATCTCCCCTGCATGTGTGTTGGCCATAGTAGTCAACGTTGAACAACTTTGATGTTCCATTTCCACTGGAATCCATTTGTTGCACTGTCTTTGTTGCAGGACAGCCTTGCACTTTACTATTGGCACACCTGTAGTAGCTCCTGCTTAAGAAAATGAGCTCATTAGATGTATATATTTTTTTCTGTTAGATAAAATCAATATGCTTCGAGGAATGGAAATAAACAGGAGTTCATATGCTCATTTATACCTGGAATGTTTTGCTCTAGAGATCCATTTCTGACCATACTTCCTCCATTGATGTCCATCATTGTGAGGTGCTTGAGCCACAGTTGAACCTGTGTGTTCTGCATTCTTTCTATCATAATCAAGAGGATCAATCAAATTTCGTTAGCAATGAATGATAAGCTAGTGGGCATTCCTCTAGTGGCATGTAATATATACATATACCTTCTCTTGCTAACACTTTCTTTGGCTTCCTCCTCCAAGTTGTGGTTGTCCATGATATGCTTGTCACCTTTTCTCTTACCTCCAACAAGATTGGTCAGCTTGTTAGTGTCTCCACCAAGTTCTAGCATGGAGATAGCCTTATCTGAGCAACTTAATATATCTCCCAAGAGTTAAAGAGCAAGCTTGGCTTGTTCATTGTCGCTCGGAAGTATTGGCATGACCATGCCACGCAGCTCCACCATGAGAGCCTTTTGGTGCTCTATCATGTTGATCACTACTTGACAGTCACTATGACCAAAAGATTCGAGAATTTTCATCTTATGAGTTTGTCTATTATGGAGATGTGGCTATGATAGTCAGGGCAGAAGGTGTTAGCTAACTGCAGCTTTAGGCATATATTTATACCGGTAGCAAGCAGCAGCACCATGATGGGAGGAATTGAGATTGTTCAAATGTTCTCACAACAAAAGTCTAGCGAAGTGAGGTCATTATCAAATACCAGTACAATTTTATGACTGAGAGACAGATGTAACTCTAAAAAATTGCAAAAATGGGTTCTATTCTAGGATGTCTCTCCTGAGTTACATATATCTTACGTCAGAGCCTGCATCAGTGTTTTCTTTTATTAGTGAAAGTACCTAAAAGGTTAAGTTTTTGCTCAGAACTTCATCCTAAAAGAAGTTTGGAGAAAATTACTCCAGGAACATCGTAATCGAGTAGAGGAACAAACAAATTTCCCTTTTCTGGAACAAAGAAAATTTGTATTGTATATTAGGTGACTATAATCCCATTGAGATTGCATGTCTATTATATTTTATTCTATGGAGTATTTAGCATATTATCACTGTGAAGAGGTGTATAAACAATTGTAAACATAAATCCCAGCGGACCCAGCCCAAGAAAAAAAGCGATTTATCAAGAACTTGAGCATATCATTAAAAAAAATATCTGTGTATGAAATTACAACATCCAACCATAACTGATAGGTGAAAAACGTTTCTGTTTGTACTTGATGATCAGGAGGATATGGATGGGGTGACTTGTGGCTAGCAATGATTCCTGTGATTGTTGGCTGACAGACCTAGTTACCATAATATAAATGTGCGAGCAGCTGCTTCATTCCACATCATATGTGGATGCAAAAAATTGCTCTGGTTTTCTGGTGGTTGTAGAGAGAAGATATATGGGGACCACAAATTGTCCCTCGTTACTGGTCCCTGAATAGGGACATGCTTGCTTTGACTCCAATGGAACGCAATCAATTGTTCCAACCGGCTGGCCAGCAGGTTCAATTTTAGTTTAACTCAAGCATGTTTGTTCTTTCCAATTAAAACACCTATCTGGTAATCTGGATCGAGTGGATTATTACTAGCTTGGTGAATCTGTTGGAATAATCTTGTGGAGCAAAGTAACGTGTATCTTAGCCTTGATTAATTGTGCCAATATTAACTTTAATCAAGCTATAGAGCAATGGCAGATCTTCTCGTAATATCTGTCCAAGCCAACCATCTAAGAAGGGGAAAAAATATAAAAGGGGAAATTCAATCCAGCTATGGCTTTATCTTTTGCTATTCTGCTTGTATGGAGAACTTGTAATAAATTATAGTAACAATATCTTTTCCTTATTTGAATTTAGTGACCGGGATGTTTTACTCCATCAAAAACATGGCGTGACCGTGCGAGTCAAGAAGGAACACGCCAATACCTTATGTTCAGTTTGACAGCACGCCCGGATGGATGTACTCCAGTACCGTGCCATTTTTTGTTTCCTGTTGTGTTCTGAGCAGCCGGTCGGCGACAAACATACACAGTCAAGGTGTTCTGCCGCTTCGTTCTGTCCGCCTAAGGTTCGGCATGTTCTGTTTCCTCTTTGGCTTCTGAAATTCTGAATTCTAGCTTGATAATTCAACTGAAAAGTCGATATCGATGTTACAGTCTTGGTGTTTATAGAAGAAAATTGCTCACCATGTTGTAGTTGTGAAATATGTGTGAAATCGATCTCCTATCATCAATGATAGAATCAAATTTTCTCAAAGAGTTATAAACATTATGTAGTTATGTTCAGGGGTTCAGAGCGGCAGAGGATCTGTCAACAAAATTGAACAAGGTTAAGGTTAAGGTTAAGGTTGCAACTAAACCAGTCCAAGGGGCATATCTATAGTTTCGGGCTAGATGTTTCCTGCGTAGCCCAGATTGAGAAGAGCCCCTATCTCTCAAAAAAAAGGTGGCCCAAGGAATCCAGACACTAATACAGTACTATCACAAAGACATGGTGACGCTGCCTTGCATAAGCCACATGCCCAAAATCCTCAATCCAATTTGACAGTTTTATAAATTTCTTTCCATATATGATGGTATGATCGATGTCCAGCCGGGTCCATTGAATCACTATCAGAACCTGAATATTACCTATATATTAATTGTTAGGTTTAGTTGATGGGATCGATTATTTCTTCATTCTTGAATTGAATGGTCCAGTGGATGACCCATATACTGAGCTAGG
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| CDS seq | CTCTTGGGAGATATATTAAGTTGCTCAGATAAGGCTATCTCCATGCTAGAACTTGGTGGAGACACTAACAAGCTGACCAATCTTGTTGGAGGTAAGAGAAAAGGTGACAAGCATATCATGGACAACCACAACTTGGAGGAGGAAGCCAAAGAAAGTGTTAGCAAGAGAAGAAAGAATGCAGAACACACAGGTTCAACTGTGGCTCAAGCACCTCACAATGATGGACATCAATGGAGGAAGTATGGTCAGAAATGGATCTCTAGAGCAAAACATTCCAGGAGCTACTACAGGTGTGCCAATAGTAAAGTGCAAGGCTGTCCTGCAACAAAGACAGTGCAACAAATGGATTCCAGTGGAAATGGAACATCAAAGTTGTTCAACGTTGACTACTATGGCCAACACACATGCAGGGGAGATGGCATAGCCAATCCATATGTTGTCGACACAGCCCATCACAGTATGGAACCTATCAATCAAAACGAATGCAATAGCCCTACACTTGAACACGAAGCCCATGAAGTTCAAGATGAAAGATTTGAAAACTTGTGTATGGTACAAAATATGCCAGAGTATTTGATAGATTTTGAATTGGAGAGAGCCTTCGAGTTTATTGTGAACTCACCATTGGGTTCTGAGCATTGGACGTTCGATGATTCAATAAGATGTGAGCACAGTCCAATATGCATATGGGGATGA
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| Protein seq | LLGDILSCSDKAISMLELGGDTNKLTNLVGGKRKGDKHIMDNHNLEEEAKESVSKRRKNAEHTGSTVAQAPHNDGHQWRKYGQKWISRAKHSRSYYRCANSKVQGCPATKTVQQMDSSGNGTSKLFNVDYYGQHTCRGDGIANPYVVDTAHHSMEPINQNECNSPTLEHEAHEVQDERFENLCMVQNMPEYLIDFELERAFEFIVNSPLGSEHWTFDDSIRCEHSPICIWG |
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| Function | Probable WRKY transcription factor 46 [UniProtKB/Swiss-Prot:Q9SKD9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0116600 | Os12t0116600-01 | Chr12 | 817004 | 820412 | - | irgsp1_rep | ||
| CDS seq | CTCTTGGGAGATATATTAAGTTGCTCAGATAAGGCTATCTCCATGCTAGAACTTGGTGGAGACACTAACAAGCTGACCAATCTTGTTGGAGGTAAGAGAAAAGGTGACAAGCATATCATGGACAACCACAACTTGGAGGAGGAAGCCAAAGAAAGTGTTAGCAAGAGAAGAAAGAATGCAGAACACACAGGTTCAACTGTGGCTCAAGCACCTCACAATGATGGACATCAATGGAGGAAGTATGGTCAGAAATGGATCTCTAGAGCAAAACATTCCAGGAGCTACTACAGGTGTGCCAATAGTAAAGTGCAAGGCTGTCCTGCAACAAAGACAGTGCAACAAATGGATTCCAGTGGAAATGGAACATCAAAGTTGTTCAACGTTGACTACTATGGCCAACACACATGCAGGGGAGATGGCATAGCCAATCCATATGTTGTCGACACAGCCCATCACAGTATGGAACCTATCAATCAAAACGAATGCAATAGCCCTACACTTGAACACGAAGCCCATGAAGTTCAAGATGAAAGATTTGAAAACTTGTGTATGGTACAAAATATGCCAGAGTATTTGATAGATTTTGAATTGGAGAGAGCCTTCGAGTTTATTGTGAACTCACCATTGGGTTCTGAGCATTGGACGTTCGATGATTCAATAAGATGTGAGCACAGTCCAATATGCATATGGGGATGA
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| Protein seq | LLGDILSCSDKAISMLELGGDTNKLTNLVGGKRKGDKHIMDNHNLEEEAKESVSKRRKNAEHTGSTVAQAPHNDGHQWRKYGQKWISRAKHSRSYYRCANSKVQGCPATKTVQQMDSSGNGTSKLFNVDYYGQHTCRGDGIANPYVVDTAHHSMEPINQNECNSPTLEHEAHEVQDERFENLCMVQNMPEYLIDFELERAFEFIVNSPLGSEHWTFDDSIRCEHSPICIWG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0116600 | RBH | 0.000000 | 0.000000 | 0.469041 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g02440 | RBH | 0.269752 | 0.424551 | 0.120703 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0117400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001050 | RBH | 0.429162 | 1.226227 | 1.501690 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001260 | RBH | 0.0 | 0.0 | 1.409631 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001270 | RBH | 0.895411 | 0.0 | 2.659462 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001090 | RBH | 0.022216 | 0.087658 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001220 | SBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0015600 | SBH | 0.81806 | 0.460498 | 0.4151525 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001220 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0015700 | RBH | 13.923152 | 19.8306655 | 12.104101 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001070 | RBH | 0.503554 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001200 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001220 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001190 | RBH | 1.082904 | 0.0 | 0.341438 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001250 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001180 | SBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001190 | SBH | 0.0 | 0.0 | 0.0 |
