Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0104200 | OGI:12000500 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:205970-207000 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCCTTATTAGTTAACAATAATCGATCCTATGTGCAGCTTATCCGGCCATGCGTTACACGTTTGGACGCATCCCGAAATCAAGTTTTGCTGGCTGCGACAACGGATTGCAGATCTTCTCAATCAAACTCCTCCTCCGCAACAGACCATCAGCTCCAGTGGCCACTTCATGTCTATGGCCTCGTCGCTACCAGGGACTCTCTTGATCCTAGGCGCAACCTTCTCTTTAATCGCACTAGAGACAACTGCCAAATCCTTACTCAACAGGTATATATTATTAACCTCTTCTTCTTAATTCGAGTCCATTAAGAGGTTGATTGACTAGCTCATATATATGCTCTTAATTGCAGGATCCCTTTCTAGTGCTAACAGGACCGTCTCGCGCAATTGTCTTAATTGATCCTGTTCAATTTGAGGTTCAGCTCAAAGCAAAGTCCAATAACAACACCCTGCATGATCATCCTGACCAAGATCAAATTGTTAACTTTGGAGTGGTGGATTCTGGCTATCTTCCAGGCCCAACGAGGCATTGCATCGGCAAGCGGAGTGAGGTCGAGTTCACAATCTCAGTGCTTGATCGATCAATTGAGGCCACTATCATCAGCGTCCAGCTTGTTGGTGGCTCGTCATGGCCGGATCATCTCCAAGGAAAGCTTGTTTCCCGTACGGCCAGTGCAATTCATCAAGAAATCGTGCTACTTGATTCTCAAAAACAACAAGATGGAAAAATGCCTATCGATGATGGCGGCTTCATTCAGCTTTCAAGGCGTGTTGTTTCGGTAGAACTGGCTGGCCAACTCATAGTTCAAGTGCTGGCTTTCAATTCCCAGCAGCAAGTAGTTGACAATGACAACGACAACAAGAAGGATGAGATTGTTGCAAAACACGAGATTGTTTTTGATCCTAAGGAAGCTTCATTGAGTGTGGAGACGTGTGAGCTACAACTAGGAGGAGGAGGAGGAGGCCCATGTAAGCTTCAAATCTCTGTTGCTTGGTCTCTGGTCGATAGGCTTCCCCCTGTTGGCTATTTCTAA
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| CDS seq | TCCTTATTAGTTAACAATAATCGATCCTATGTGCAGCTTATCCGGCCATGCGTTACACGTTTGGACGCATCCCGAAATCAAGTTTTGCTGGCTGCGACAACGGATTGCAGATCTTCTCAATCAAACTCCTCCTCCGCAACAGACCATCAGCTCCAGTGGCCACTTCATGTCTATGGCCTCGTCGCTACCAGGGACTCTCTTGATCCTAGGCGCAACCTTCTCTTTAATCGCACTAGAGACAACTGCCAAATCCTTACTCAACAGGATCCCTTTCTAGTGCTAACAGGACCGTCTCGCGCAATTGTCTTAATTGATCCTGTTCAATTTGAGGTTCAGCTCAAAGCAAAGTCCAATAACAACACCCTGCATGATCATCCTGACCAAGATCAAATTGTTAACTTTGGAGTGGTGGATTCTGGCTATCTTCCAGGCCCAACGAGGCATTGCATCGGCAAGCGGAGTGAGGTCGAGTTCACAATCTCAGTGCTTGATCGATCAATTGAGGCCACTATCATCAGCGTCCAGCTTGTTGGTGGCTCGTCATGGCCGGATCATCTCCAAGGAAAGCTTGTTTCCCGTACGGCCAGTGCAATTCATCAAGAAATCGTGCTACTTGATTCTCAAAAACAACAAGATGGAAAAATGCCTATCGATGATGGCGGCTTCATTCAGCTTTCAAGGCGTGTTGTTTCGGTAGAACTGGCTGGCCAACTCATAGTTCAAGTGCTGGCTTTCAATTCCCAGCAGCAAGTAGTTGACAATGACAACGACAACAAGAAGGATGAGATTGTTGCAAAACACGAGATTGTTTTTGATCCTAAGGAAGCTTCATTGAGTGTGGAGACGTGTGAGCTACAACTAGGAGGAGGAGGAGGAGGCCCATGTAAGCTTCAAATCTCTGTTGCTTGGTCTCTGGTCGATAGGCTTCCCCCTGTTGGCTATTTCTAA
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| Protein seq | SLLVNNNRSYVQLIRPCVTRLDASRNQVLLAATTDCRSSQSNSSSATDHQLQWPLHVYGLVATRDSLDPRRNLLFNRTRDNCQILTQQDPFLVLTGPSRAIVLIDPVQFEVQLKAKSNNNTLHDHPDQDQIVNFGVVDSGYLPGPTRHCIGKRSEVEFTISVLDRSIEATIISVQLVGGSSWPDHLQGKLVSRTASAIHQEIVLLDSQKQQDGKMPIDDGGFIQLSRRVVSVELAGQLIVQVLAFNSQQQVVDNDNDNKKDEIVAKHEIVFDPKEASLSVETCELQLGGGGGGPCKLQISVAWSLVDRLPPVGYF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0104200 | Os12t0104200-00 | Chr12 | 205970 | 207000 | + | irgsp1_rep | ||
| CDS seq | TCCTTATTAGTTAACAATAATCGATCCTATGTGCAGCTTATCCGGCCATGCGTTACACGTTTGGACGCATCCCGAAATCAAGTTTTGCTGGCTGCGACAACGGATTGCAGATCTTCTCAATCAAACTCCTCCTCCGCAACAGACCATCAGCTCCAGTGGCCACTTCATGTCTATGGCCTCGTCGCTACCAGGGACTCTCTTGATCCTAGGCGCAACCTTCTCTTTAATCGCACTAGAGACAACTGCCAAATCCTTACTCAACAGGATCCCTTTCTAGTGCTAACAGGACCGTCTCGCGCAATTGTCTTAATTGATCCTGTTCAATTTGAGGTTCAGCTCAAAGCAAAGTCCAATAACAACACCCTGCATGATCATCCTGACCAAGATCAAATTGTTAACTTTGGAGTGGTGGATTCTGGCTATCTTCCAGGCCCAACGAGGCATTGCATCGGCAAGCGGAGTGAGGTCGAGTTCACAATCTCAGTGCTTGATCGATCAATTGAGGCCACTATCATCAGCGTCCAGCTTGTTGGTGGCTCGTCATGGCCGGATCATCTCCAAGGAAAGCTTGTTTCCCGTACGGCCAGTGCAATTCATCAAGAAATCGTGCTACTTGATTCTCAAAAACAACAAGATGGAAAAATGCCTATCGATGATGGCGGCTTCATTCAGCTTTCAAGGCGTGTTGTTTCGGTAGAACTGGCTGGCCAACTCATAGTTCAAGTGCTGGCTTTCAATTCCCAGCAGCAAGTAGTTGACAATGACAACGACAACAAGAAGGATGAGATTGTTGCAAAACACGAGATTGTTTTTGATCCTAAGGAAGCTTCATTGAGTGTGGAGACGTGTGAGCTACAACTAGGAGGAGGAGGAGGAGGCCCATGTAAGCTTCAAATCTCTGTTGCTTGGTCTCTGGTCGATAGGCTTCCCCCTGTTGGCTATTTCTAA
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| Protein seq | SLLVNNNRSYVQLIRPCVTRLDASRNQVLLAATTDCRSSQSNSSSATDHQLQWPLHVYGLVATRDSLDPRRNLLFNRTRDNCQILTQQDPFLVLTGPSRAIVLIDPVQFEVQLKAKSNNNTLHDHPDQDQIVNFGVVDSGYLPGPTRHCIGKRSEVEFTISVLDRSIEATIISVQLVGGSSWPDHLQGKLVSRTASAIHQEIVLLDSQKQQDGKMPIDDGGFIQLSRRVVSVELAGQLIVQVLAFNSQQQVVDNDNDNKKDEIVAKHEIVFDPKEASLSVETCELQLGGGGGGPCKLQISVAWSLVDRLPPVGYF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0104200 | RBH | 0.000000 | 0.193849 | 1.999788 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01350 | RBH | 0.128685 | 0.096337 | 0.419432 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0104220 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000160 | RBH | 0.505174 | 0.0 | 0.438594 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000340 | RBH | 0.395342 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000230 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000180 | RBH | 0.000000 | 0.049320 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0000280 | SBH | 1.973552 | 3.714696 | 9.759648 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0003300 | SBH | 0.027926 | 0.055294 | 0.0355645 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000310 | SBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0003000 | RBH | 2.0542555 | 2.8117485 | 2.2073625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000170 | RBH | 0.123403 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0000280 | SBH | 0.474101 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000280 | SBH | 4.827595 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000280 | RBH | 0.302517 | 0.0 | 0.259371 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0000280 | SBH | 0.213934 | 0.928778 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000180 | SBH | 0.206215 | 0.0 | 0.659951 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0000310 | RBH | 0.000000 | 0.000000 | 1.629709 |
