Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0672300 | OGI:11077480 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:27155346-27157693 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATTCTTCTTCTTCTCCTAGGACAGTGCCATCCAAGTATCCAACGAACGCAAGATGGCTCTGGTTGCTCAGGCCTCCACCATCGCGCAGTTCGCCGGAGTGGACGCCTACGGCCTGATCAAGATGATCGCCGAGGCGGCGCAGACGGTGCGGCGCAACAGGGCGACGTGCCTGCAGCTCGCGCGGCGCCTCAAGATGATCGGAGATCTTCTCAAGCAGCTCCACGGTGCGCAGCTGATGCAGCAGCCGGAGACGAGGAACCCGGTGGAGCAGCTGGAGGAGACGCTCCGGCGAGCGTACCTGCTCGTCCGGTCATGCCAGGGCCGGAGCTACGTGTACCGCTGCTTCATGGGAGGCCGGCACGCCGACGAGCTCAGGGAAGTGCAGAGTGAGATCGCCTTCTACCTCCAGCTCTTCCCTCTCGTCAGCTATGTCGATGCTACACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGGTACAGCAAGTTCAAAACTAGTTCTGTTTCTTTCTGAAATTTACAAGCAGAAACAAACCAATTTTTCAGTTTTGGAATCTGAGGTCAACAGAGATAATAACACAGCATAATCTGTGTACATAAATTTGCTGGATTTTGCTTTTTGCATTACTCTGAAAAAAAATGAGATGTGAAAACTCGATGCGTTTTACTGATGTAATATTGTCTGAATATTTCTGATGCTGATTATTTTTGTGGAGGAACTTATGCTTTGTCATGTGTTTGTTTGTACAGGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGATGGATCGTGCTTAGCAGTTGTTCAGAAAGTACACCTTGGTATAGTGTACACATGGTTATATATCTCTTACCTTAATATCTACTCAACTATCTGCAGATCTTTCATGTGTCTGCAGGAGTTAAATTGTTGCCTAGCTGACATTTACTTTTTGCGATAATTTCATTCAAACGATCGATCGACAGGCATCTAGCTAGTACACTAATTCTGAAAGTGCTAGCTAGTACACTATTGTGATTCTTTTTTACCAGCTAAGTACTTTTGCCTGTGGAGAATTTGGCCTAGAGTAAAAGTTCAGGTGTGCACTTGATCCGAAGTACAAACTGTAAGTCAATCATTGATGTGTCCTGGATAGGTATGTTTTGTTATCTTGTTTTAGCATGGAAGAACAGACCAGATCTGATTACTGTAACTTACCAAACTCTTGGATATTCCCTTCTATCATCCAAGTTTCTCTCAAGATCTCTAGTTTGCATCCAAAGCTTACATTTCGGTTTATCAGGATTATAAAGTTCCAGGGTCGGCGAGGCAGTTGCCGATACAGTTGAATCGGTCCATGAGCTCTACACCAGTGAGCGACAACGAGTAGGAAGATATCTAGATGCTTAAGTCATTCAGGTTCCAGAGCTAGGTTTGTGCATTTTCTCAAATAACTTTACTTAAAGGCTCTCTTATGTTCGCATTATAAAGGATAGTTTATTTGTAAATATTAAGCAATAATATAGGGGATCTTCATTTAATTGATAATAGCATAGTGCAATTGTATTTCTTTTACACTTATAGTCCATGAGGAAATGAGTTATCTTACAGAAATATGAACTTGCATGTATTGCAAACTTGTCATTTTTTAATCATTCATCACCCTCTGAACCTTCAGATTTATCAATAATCATTATGGAGGTGAAAAGCACCAGCATGACTCAAGTTCAGCTCGCTTTGACTGTTTAAGTCAAGAGTTAAAAAGGATACCCAAGAGTTCTTACCTGAATAGAGAAAATGTAAAAACCATGAGTCTAAGTGAAGAGGCTCAAATCCATCTCGCTAAATTCAGGTGGGGAAGCTCTCCGCTCCAGTGATTTCTCAAATAAAAATCTCGTTGAGCTGCTTCAGATTCAGAGTTATATGAGCAGTAGGGCTCTAGTTCTCCTCAATTTTCTGCTTCATATTCAGAGTTAAATATTACAAGATAGTTGAACCAGAATCCTACCAAATTTCTGGGTTTTGCCGGGATACAACTGATAATCTCATGGAATCATTGTCAACATTTTTTGAGCTATTTTTTGAGTGAGTTCAGAGATAATAGCAGTGATGTTTCTATGCATTTTTCTGCATCATATATGCAGTGATGTTTCTATGCATATCTCTGCATCATATATGCAGGATCGGTTGTCGTTTGATGTACCTGAGTTTTGATTGGTTGAATTCTACCACTATTCATTATATTCCTTCTTAATGTTTTCATTGGGTATCATACACATGTTTTAACCACACAAAGTTATTTATCTAAACTTTGTATGATCCTGCATTCTCAAGGAATT
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| CDS seq | ATGGCTCTGGTTGCTCAGGCCTCCACCATCGCGCAGTTCGCCGGAGTGGACGCCTACGGCCTGATCAAGATGATCGCCGAGGCGGCGCAGACGGTGCGGCGCAACAGGGCGACGTGCCTGCAGCTCGCGCGGCGCCTCAAGATGATCGGAGATCTTCTCAAGCAGCTCCACGGTGCGCAGCTGATGCAGCAGCCGGAGACGAGGAACCCGGTGGAGCAGCTGGAGGAGACGCTCCGGCGAGCGTACCTGCTCGTCCGGTCATGCCAGGGCCGGAGCTACGTGTACCGCTGCTTCATGGGAGGCCGGCACGCCGACGAGCTCAGGGAAGTGCAGAGTGAGATCGCCTTCTACCTCCAGCTCTTCCCTCTCGTCAGCTATGTCGATGCTACACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGATGGATCGTGCTTAGCAGTTGTTCAGAAAGTACACCTTGGTATAGTGTACACATGGTTATATATCTCTTACCTTAATATCTACTCAACTATCTGCAGATCTTTCATGTGTCTGCAGGAGTTAAATTGTTGCCTAGCTGACATTTACTTTTTGCGATAA
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| Protein seq | MALVAQASTIAQFAGVDAYGLIKMIAEAAQTVRRNRATCLQLARRLKMIGDLLKQLHGAQLMQQPETRNPVEQLEETLRRAYLLVRSCQGRSYVYRCFMGGRHADELREVQSEIAFYLQLFPLVSYVDATLNWVRHLNKADPSCKEAPLVRPYFVPFVILSWDGSCLAVVQKVHLGIVYTWLYISYLNIYSTICRSFMCLQELNCCLADIYFLR |
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| Function | Cell number regulator 13 [UniProtKB/Swiss-Prot:B6SJQ0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0672300 | Os11t0672300-01 | Chr11 | 27155346 | 27157693 | + | irgsp1_rep | ||
| CDS seq | ATGGCTCTGGTTGCTCAGGCCTCCACCATCGCGCAGTTCGCCGGAGTGGACGCCTACGGCCTGATCAAGATGATCGCCGAGGCGGCGCAGACGGTGCGGCGCAACAGGGCGACGTGCCTGCAGCTCGCGCGGCGCCTCAAGATGATCGGAGATCTTCTCAAGCAGCTCCACGGTGCGCAGCTGATGCAGCAGCCGGAGACGAGGAACCCGGTGGAGCAGCTGGAGGAGACGCTCCGGCGAGCGTACCTGCTCGTCCGGTCATGCCAGGGCCGGAGCTACGTGTACCGCTGCTTCATGGGAGGCCGGCACGCCGACGAGCTCAGGGAAGTGCAGAGTGAGATCGCCTTCTACCTCCAGCTCTTCCCTCTCGTCAGCTATGTCGATGCTACACTCAACTGGGTGAGACATCTGAATAAAGCCGATCCATCCTGCAAAGAGGCACCTTTGGTAAGACCATATTTTGTGCCATTTGTGATTCTCTCATGGGATGGATCGTGCTTAGCAGTTGTTCAGAAAGTACACCTTGGTATAGTGTACACATGGTTATATATCTCTTACCTTAATATCTACTCAACTATCTGCAGATCTTTCATGTGTCTGCAGGAGTTAAATTGTTGCCTAGCTGACATTTACTTTTTGCGATAA
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| Protein seq | MALVAQASTIAQFAGVDAYGLIKMIAEAAQTVRRNRATCLQLARRLKMIGDLLKQLHGAQLMQQPETRNPVEQLEETLRRAYLLVRSCQGRSYVYRCFMGGRHADELREVQSEIAFYLQLFPLVSYVDATLNWVRHLNKADPSCKEAPLVRPYFVPFVILSWDGSCLAVVQKVHLGIVYTWLYISYLNIYSTICRSFMCLQELNCCLADIYFLR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0672300 | RBH | 6.382962 | 5.117215 | 6.601763 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44870 | RBH | 4.084661 | 3.254471 | 1.604817 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0670100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023410 | RBH | 0.000000 | 5.904353 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023330 | RBH | 0.052809 | 0.0 | 1.302209 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022980 | RBH | 0.510524 | 4.293020 | 1.155933 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022780 | RBH | 0.081396 | 0.030739 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022980 | RBH | 0.618538 | 11.096627 | 0.796510 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0409200 | RBH | 2.476424 | 39.336998 | 1.37596 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023820 | RBH | 0.000000 | 0.302426 | 0.116180 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0427800 | RBH | 1.223161 | 7.0289495 | 0.0496 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023640 | RBH | 1.663286 | 1.934665 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023700 | RBH | 0.680464 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023160 | RBH | 0.000000 | 4.842212 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022810 | RBH | 1.314679 | 0.0 | 0.581604 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022930 | RBH | 0.000000 | 1.447865 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023100 | SBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023500 | SBH | 0.0 | 0.000000 | 0.000000 |
